HEADER HYDROLASE 08-MAY-22 7UZ2 TITLE STRUCTURE OF BETA-GLYCOSIDASE FROM SULFOLOBUS SOLFATARICUS IN COMPLEX TITLE 2 WITH C5A-FLUORO-VALIENIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: HFC64_10340, SSOP1_3114, SULA_0798, SULB_0800, SULC_0798, SOURCE 5 SULZ_04135; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COVALENT INHIBITION, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.DANBY,A.JEONG,L.SIM,R.P.SWEENEY,J.F.WARDMAN,A.GEISSNER, AUTHOR 2 L.J.WORRALL,N.C.J.STRYNADKA,S.G.WITHERS REVDAT 3 25-OCT-23 7UZ2 1 REMARK REVDAT 2 17-MAY-23 7UZ2 1 JRNL REVDAT 1 05-APR-23 7UZ2 0 JRNL AUTH P.M.DANBY,A.JEONG,L.SIM,R.P.SWEENEY,J.F.WARDMAN,R.KARIMI, JRNL AUTH 2 A.GEISSNER,L.J.WORRALL,J.P.REID,N.C.J.STRYNADKA,S.G.WITHERS JRNL TITL VINYL HALIDE-MODIFIED UNSATURATED CYCLITOLS ARE JRNL TITL 2 MECHANISM-BASED GLYCOSIDASE INHIBITORS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 62 01258 2023 JRNL REFN ESSN 1521-3773 JRNL PMID 36940280 JRNL DOI 10.1002/ANIE.202301258 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 136532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.085 REMARK 3 FREE R VALUE TEST SET COUNT : 6942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 503 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87100 REMARK 3 B22 (A**2) : -0.87100 REMARK 3 B33 (A**2) : 2.82600 REMARK 3 B12 (A**2) : -0.43600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8212 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7245 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11182 ; 1.668 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16605 ; 1.392 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 976 ; 7.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 490 ;34.159 ;21.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1220 ;16.339 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;18.695 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 977 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9489 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2141 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1611 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 49 ; 0.152 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3867 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 349 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3910 ; 3.685 ; 4.289 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3909 ; 3.675 ; 4.288 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4884 ; 4.610 ; 6.423 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4885 ; 4.610 ; 6.424 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4302 ; 4.010 ; 4.541 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4303 ; 4.010 ; 4.541 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6298 ; 5.416 ; 6.692 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6299 ; 5.415 ; 6.692 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7UZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1000264713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136568 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UWR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 - 13 % PEG 4000, 0.1 M SODIUM REMARK 280 ACETATE, 0.2M AMMONIUM ACETATE, 5% ETHYLENE GLYCOL., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.83467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.66933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.66933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.83467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 6 CG OD1 ND2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLN A 96 CB CG CD OE1 NE2 REMARK 470 ASN A 97 CB CG OD1 ND2 REMARK 470 GLU A 100 CB CG CD OE1 OE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 255 CD CE NZ REMARK 470 LYS A 273 CD CE NZ REMARK 470 ASN A 302 CB CG OD1 ND2 REMARK 470 LYS A 304 CB CG CD CE NZ REMARK 470 GLU A 331 CD OE1 OE2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LYS A 485 CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 ASN B 6 CG OD1 ND2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 96 CB CG CD OE1 NE2 REMARK 470 ASN B 97 CB CG OD1 ND2 REMARK 470 LYS B 102 CD CE NZ REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 LYS B 135 CE NZ REMARK 470 LYS B 255 CD CE NZ REMARK 470 LYS B 273 CD CE NZ REMARK 470 ASN B 302 CB CG OD1 ND2 REMARK 470 LYS B 304 CB CG CD CE NZ REMARK 470 GLU B 331 CB CG CD OE1 OE2 REMARK 470 LYS B 332 CB CG CD CE NZ REMARK 470 LYS B 485 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 182 HH11 ARG A 185 1.52 REMARK 500 HH22 ARG B 79 OD1 ASN B 205 1.54 REMARK 500 O ARG A 165 HH TYR B 226 1.58 REMARK 500 OD1 ASN B 388 HH TYR B 422 1.59 REMARK 500 OD1 ASP B 195 OG SER B 254 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 387 CD GLU A 387 OE2 0.097 REMARK 500 GLU B 387 CD GLU B 387 OE2 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 86 CG - CD - NE ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 463 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 79 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 86 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG B 164 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 164 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG B 488 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 151 -55.95 108.57 REMARK 500 VAL A 216 -59.81 -128.45 REMARK 500 SER A 228 116.95 -164.15 REMARK 500 ARG A 286 -66.33 -138.56 REMARK 500 LEU A 314 127.68 -170.06 REMARK 500 TYR A 322 -30.78 -132.43 REMARK 500 SER A 348 -146.36 -153.44 REMARK 500 PHE A 364 66.53 -153.46 REMARK 500 ASP A 392 80.84 -169.64 REMARK 500 TRP A 433 -129.53 54.44 REMARK 500 PHE B 88 72.98 -119.22 REMARK 500 ASN B 97 71.35 44.75 REMARK 500 PHE B 98 116.08 -162.40 REMARK 500 TRP B 151 -52.98 109.34 REMARK 500 HIS B 158 113.76 -162.57 REMARK 500 VAL B 216 -59.44 -131.02 REMARK 500 SER B 228 112.92 -162.76 REMARK 500 ARG B 286 -60.73 -139.35 REMARK 500 ARG B 313 54.32 -90.47 REMARK 500 SER B 348 -143.22 -153.59 REMARK 500 PHE B 364 70.65 -155.16 REMARK 500 ASP B 392 83.54 -167.76 REMARK 500 TRP B 433 -131.64 55.07 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7UZ2 A 1 489 UNP A0A0E3K5E4_SACSO DBREF2 7UZ2 A A0A0E3K5E4 1 489 DBREF1 7UZ2 B 1 489 UNP A0A0E3K5E4_SACSO DBREF2 7UZ2 B A0A0E3K5E4 1 489 SEQADV 7UZ2 HIS A 235 UNP A0A0E3K5E ALA 235 ENGINEERED MUTATION SEQADV 7UZ2 HIS B 235 UNP A0A0E3K5E ALA 235 ENGINEERED MUTATION SEQRES 1 A 489 MET TYR SER PHE PRO ASN SER PHE ARG PHE GLY TRP SER SEQRES 2 A 489 GLN ALA GLY PHE GLN SER GLU MET GLY THR PRO GLY SER SEQRES 3 A 489 GLU ASP PRO ASN THR ASP TRP TYR LYS TRP VAL HIS ASP SEQRES 4 A 489 PRO GLU ASN MET ALA ALA GLY LEU VAL SER GLY ASP LEU SEQRES 5 A 489 PRO GLU ASN GLY PRO GLY TYR TRP GLY ASN TYR LYS THR SEQRES 6 A 489 PHE HIS ASP ASN ALA GLN LYS MET GLY LEU LYS ILE ALA SEQRES 7 A 489 ARG LEU ASN VAL GLU TRP SER ARG ILE PHE PRO ASN PRO SEQRES 8 A 489 LEU PRO ARG PRO GLN ASN PHE ASP GLU SER LYS GLN ASP SEQRES 9 A 489 VAL THR GLU VAL GLU ILE ASN GLU ASN GLU LEU LYS ARG SEQRES 10 A 489 LEU ASP GLU TYR ALA ASN LYS ASP ALA LEU ASN HIS TYR SEQRES 11 A 489 ARG GLU ILE PHE LYS ASP LEU LYS SER ARG GLY LEU TYR SEQRES 12 A 489 PHE ILE LEU ASN MET TYR HIS TRP PRO LEU PRO LEU TRP SEQRES 13 A 489 LEU HIS ASP PRO ILE ARG VAL ARG ARG GLY ASP PHE THR SEQRES 14 A 489 GLY PRO SER GLY TRP LEU SER THR ARG THR VAL TYR GLU SEQRES 15 A 489 PHE ALA ARG PHE SER ALA TYR ILE ALA TRP LYS PHE ASP SEQRES 16 A 489 ASP LEU VAL ASP GLU TYR SER THR MET ASN GLU PRO ASN SEQRES 17 A 489 VAL VAL GLY GLY LEU GLY TYR VAL GLY VAL LYS SER GLY SEQRES 18 A 489 PHE PRO PRO GLY TYR LEU SER PHE GLU LEU SER ARG ARG SEQRES 19 A 489 HIS MET TYR ASN ILE ILE GLN ALA HIS ALA ARG ALA TYR SEQRES 20 A 489 ASP GLY ILE LYS SER VAL SER LYS LYS PRO VAL GLY ILE SEQRES 21 A 489 ILE TYR ALA ASN SER SER PHE GLN PRO LEU THR ASP LYS SEQRES 22 A 489 ASP MET GLU ALA VAL GLU MET ALA GLU ASN ASP ASN ARG SEQRES 23 A 489 TRP TRP PHE PHE ASP ALA ILE ILE ARG GLY GLU ILE THR SEQRES 24 A 489 ARG GLY ASN GLU LYS ILE VAL ARG ASP ASP LEU LYS GLY SEQRES 25 A 489 ARG LEU ASP TRP ILE GLY VAL ASN TYR TYR THR ARG THR SEQRES 26 A 489 VAL VAL LYS ARG THR GLU LYS GLY TYR VAL SER LEU GLY SEQRES 27 A 489 GLY TYR GLY HIS GLY CYS GLU ARG ASN SER VAL SER LEU SEQRES 28 A 489 ALA GLY LEU PRO THR SER ASP PHE GLY TRP GLU PHE PHE SEQRES 29 A 489 PRO GLU GLY LEU TYR ASP VAL LEU THR LYS TYR TRP ASN SEQRES 30 A 489 ARG TYR HIS LEU TYR MET TYR VAL THR GLU ASN GLY ILE SEQRES 31 A 489 ALA ASP ASP ALA ASP TYR GLN ARG PRO TYR TYR LEU VAL SEQRES 32 A 489 SER HIS VAL TYR GLN VAL HIS ARG ALA ILE ASN SER GLY SEQRES 33 A 489 ALA ASP VAL ARG GLY TYR LEU HIS TRP SER LEU ALA ASP SEQRES 34 A 489 ASN TYR GLU TRP ALA SER GLY PHE SER MET ARG PHE GLY SEQRES 35 A 489 LEU LEU LYS VAL ASP TYR ASN THR LYS ARG LEU TYR TRP SEQRES 36 A 489 ARG PRO SER ALA LEU VAL TYR ARG GLU ILE ALA THR ASN SEQRES 37 A 489 GLY ALA ILE THR ASP GLU ILE GLU HIS LEU ASN SER VAL SEQRES 38 A 489 PRO PRO VAL LYS PRO LEU ARG HIS SEQRES 1 B 489 MET TYR SER PHE PRO ASN SER PHE ARG PHE GLY TRP SER SEQRES 2 B 489 GLN ALA GLY PHE GLN SER GLU MET GLY THR PRO GLY SER SEQRES 3 B 489 GLU ASP PRO ASN THR ASP TRP TYR LYS TRP VAL HIS ASP SEQRES 4 B 489 PRO GLU ASN MET ALA ALA GLY LEU VAL SER GLY ASP LEU SEQRES 5 B 489 PRO GLU ASN GLY PRO GLY TYR TRP GLY ASN TYR LYS THR SEQRES 6 B 489 PHE HIS ASP ASN ALA GLN LYS MET GLY LEU LYS ILE ALA SEQRES 7 B 489 ARG LEU ASN VAL GLU TRP SER ARG ILE PHE PRO ASN PRO SEQRES 8 B 489 LEU PRO ARG PRO GLN ASN PHE ASP GLU SER LYS GLN ASP SEQRES 9 B 489 VAL THR GLU VAL GLU ILE ASN GLU ASN GLU LEU LYS ARG SEQRES 10 B 489 LEU ASP GLU TYR ALA ASN LYS ASP ALA LEU ASN HIS TYR SEQRES 11 B 489 ARG GLU ILE PHE LYS ASP LEU LYS SER ARG GLY LEU TYR SEQRES 12 B 489 PHE ILE LEU ASN MET TYR HIS TRP PRO LEU PRO LEU TRP SEQRES 13 B 489 LEU HIS ASP PRO ILE ARG VAL ARG ARG GLY ASP PHE THR SEQRES 14 B 489 GLY PRO SER GLY TRP LEU SER THR ARG THR VAL TYR GLU SEQRES 15 B 489 PHE ALA ARG PHE SER ALA TYR ILE ALA TRP LYS PHE ASP SEQRES 16 B 489 ASP LEU VAL ASP GLU TYR SER THR MET ASN GLU PRO ASN SEQRES 17 B 489 VAL VAL GLY GLY LEU GLY TYR VAL GLY VAL LYS SER GLY SEQRES 18 B 489 PHE PRO PRO GLY TYR LEU SER PHE GLU LEU SER ARG ARG SEQRES 19 B 489 HIS MET TYR ASN ILE ILE GLN ALA HIS ALA ARG ALA TYR SEQRES 20 B 489 ASP GLY ILE LYS SER VAL SER LYS LYS PRO VAL GLY ILE SEQRES 21 B 489 ILE TYR ALA ASN SER SER PHE GLN PRO LEU THR ASP LYS SEQRES 22 B 489 ASP MET GLU ALA VAL GLU MET ALA GLU ASN ASP ASN ARG SEQRES 23 B 489 TRP TRP PHE PHE ASP ALA ILE ILE ARG GLY GLU ILE THR SEQRES 24 B 489 ARG GLY ASN GLU LYS ILE VAL ARG ASP ASP LEU LYS GLY SEQRES 25 B 489 ARG LEU ASP TRP ILE GLY VAL ASN TYR TYR THR ARG THR SEQRES 26 B 489 VAL VAL LYS ARG THR GLU LYS GLY TYR VAL SER LEU GLY SEQRES 27 B 489 GLY TYR GLY HIS GLY CYS GLU ARG ASN SER VAL SER LEU SEQRES 28 B 489 ALA GLY LEU PRO THR SER ASP PHE GLY TRP GLU PHE PHE SEQRES 29 B 489 PRO GLU GLY LEU TYR ASP VAL LEU THR LYS TYR TRP ASN SEQRES 30 B 489 ARG TYR HIS LEU TYR MET TYR VAL THR GLU ASN GLY ILE SEQRES 31 B 489 ALA ASP ASP ALA ASP TYR GLN ARG PRO TYR TYR LEU VAL SEQRES 32 B 489 SER HIS VAL TYR GLN VAL HIS ARG ALA ILE ASN SER GLY SEQRES 33 B 489 ALA ASP VAL ARG GLY TYR LEU HIS TRP SER LEU ALA ASP SEQRES 34 B 489 ASN TYR GLU TRP ALA SER GLY PHE SER MET ARG PHE GLY SEQRES 35 B 489 LEU LEU LYS VAL ASP TYR ASN THR LYS ARG LEU TYR TRP SEQRES 36 B 489 ARG PRO SER ALA LEU VAL TYR ARG GLU ILE ALA THR ASN SEQRES 37 B 489 GLY ALA ILE THR ASP GLU ILE GLU HIS LEU ASN SER VAL SEQRES 38 B 489 PRO PRO VAL LYS PRO LEU ARG HIS HET OML A 501 22 HET OML B 501 22 HETNAM OML (1R,2S,3R,4R)-5-FLUORO-6-(HYDROXYMETHYL)CYCLOHEX-5-ENE- HETNAM 2 OML 1,2,3,4-TETROL HETSYN OML C5A-FLUORO-VALIENIDE FORMUL 3 OML 2(C7 H11 F O5) FORMUL 5 HOH *340(H2 O) HELIX 1 AA1 ALA A 15 GLU A 20 1 6 HELIX 2 AA2 THR A 31 ASP A 39 1 9 HELIX 3 AA3 ASP A 39 ALA A 45 1 7 HELIX 4 AA4 LEU A 52 GLY A 56 5 5 HELIX 5 AA5 GLY A 58 MET A 73 1 16 HELIX 6 AA6 GLU A 83 PHE A 88 1 6 HELIX 7 AA7 ASN A 111 GLU A 120 1 10 HELIX 8 AA8 ASN A 123 ARG A 140 1 18 HELIX 9 AA9 ASP A 159 ARG A 165 1 7 HELIX 10 AB1 SER A 172 LEU A 175 5 4 HELIX 11 AB2 SER A 176 ASP A 195 1 20 HELIX 12 AB3 GLU A 206 VAL A 216 1 11 HELIX 13 AB4 GLY A 217 GLY A 221 5 5 HELIX 14 AB5 SER A 228 SER A 252 1 25 HELIX 15 AB6 ASP A 274 ARG A 286 1 13 HELIX 16 AB7 ARG A 286 GLY A 296 1 11 HELIX 17 AB8 PRO A 365 HIS A 380 1 16 HELIX 18 AB9 GLN A 397 SER A 415 1 19 HELIX 19 AC1 GLU A 432 GLY A 436 5 5 HELIX 20 AC2 ARG A 456 GLY A 469 1 14 HELIX 21 AC3 THR A 472 ASN A 479 5 8 HELIX 22 AC4 ALA B 15 GLU B 20 1 6 HELIX 23 AC5 THR B 31 HIS B 38 1 8 HELIX 24 AC6 ASP B 39 ALA B 45 1 7 HELIX 25 AC7 LEU B 52 GLY B 56 5 5 HELIX 26 AC8 GLY B 58 MET B 73 1 16 HELIX 27 AC9 GLU B 83 PHE B 88 1 6 HELIX 28 AD1 ASN B 111 ALA B 122 1 12 HELIX 29 AD2 ASN B 123 SER B 139 1 17 HELIX 30 AD3 PRO B 154 HIS B 158 5 5 HELIX 31 AD4 ASP B 159 ARG B 165 1 7 HELIX 32 AD5 SER B 172 LEU B 175 5 4 HELIX 33 AD6 SER B 176 ASP B 195 1 20 HELIX 34 AD7 GLU B 206 VAL B 216 1 11 HELIX 35 AD8 GLY B 217 GLY B 221 5 5 HELIX 36 AD9 SER B 228 SER B 252 1 25 HELIX 37 AE1 THR B 271 LYS B 273 5 3 HELIX 38 AE2 ASP B 274 ARG B 286 1 13 HELIX 39 AE3 ARG B 286 GLY B 296 1 11 HELIX 40 AE4 PRO B 365 HIS B 380 1 16 HELIX 41 AE5 GLN B 397 SER B 415 1 19 HELIX 42 AE6 GLU B 432 MET B 439 5 8 HELIX 43 AE7 ARG B 456 GLY B 469 1 14 HELIX 44 AE8 THR B 472 ASN B 479 5 8 SHEET 1 AA1 2 TYR A 2 SER A 3 0 SHEET 2 AA1 2 ALA A 470 ILE A 471 -1 O ILE A 471 N TYR A 2 SHEET 1 AA210 TYR A 334 SER A 336 0 SHEET 2 AA210 TRP A 316 ARG A 329 -1 N LYS A 328 O VAL A 335 SHEET 3 AA210 MET A 383 GLU A 387 1 O TYR A 384 N VAL A 319 SHEET 4 AA210 VAL A 419 HIS A 424 1 O LEU A 423 N VAL A 385 SHEET 5 AA210 ARG A 9 SER A 13 1 N GLY A 11 O TYR A 422 SHEET 6 AA210 ILE A 77 ASN A 81 1 O ARG A 79 N TRP A 12 SHEET 7 AA210 TYR A 143 ASN A 147 1 O ILE A 145 N ALA A 78 SHEET 8 AA210 GLU A 200 ASN A 205 1 O SER A 202 N LEU A 146 SHEET 9 AA210 VAL A 258 PRO A 269 1 O GLY A 259 N TYR A 201 SHEET 10 AA210 TRP A 316 ARG A 329 1 O GLY A 318 N ILE A 260 SHEET 1 AA3 2 GLU A 297 ARG A 300 0 SHEET 2 AA3 2 GLU A 303 VAL A 306 -1 O ILE A 305 N ILE A 298 SHEET 1 AA4 2 LEU A 444 ASP A 447 0 SHEET 2 AA4 2 ARG A 452 TRP A 455 -1 O TYR A 454 N LYS A 445 SHEET 1 AA5 2 TYR B 2 SER B 3 0 SHEET 2 AA5 2 ALA B 470 ILE B 471 -1 O ILE B 471 N TYR B 2 SHEET 1 AA610 TYR B 334 SER B 336 0 SHEET 2 AA610 ILE B 317 ARG B 329 -1 N LYS B 328 O VAL B 335 SHEET 3 AA610 MET B 383 GLU B 387 1 O TYR B 384 N VAL B 319 SHEET 4 AA610 VAL B 419 HIS B 424 1 O LEU B 423 N VAL B 385 SHEET 5 AA610 ARG B 9 SER B 13 1 N GLY B 11 O TYR B 422 SHEET 6 AA610 ILE B 77 ASN B 81 1 O ARG B 79 N TRP B 12 SHEET 7 AA610 TYR B 143 TYR B 149 1 O ILE B 145 N ALA B 78 SHEET 8 AA610 GLU B 200 ASN B 205 1 O GLU B 200 N LEU B 146 SHEET 9 AA610 VAL B 258 PRO B 269 1 O GLY B 259 N TYR B 201 SHEET 10 AA610 ILE B 317 ARG B 329 1 O ASN B 320 N ASN B 264 SHEET 1 AA7 2 GLU B 297 THR B 299 0 SHEET 2 AA7 2 LYS B 304 VAL B 306 -1 O ILE B 305 N ILE B 298 SHEET 1 AA8 2 LEU B 444 VAL B 446 0 SHEET 2 AA8 2 LEU B 453 TRP B 455 -1 O TYR B 454 N LYS B 445 LINK OE2 GLU A 387 C1 OML A 501 1555 1555 1.48 LINK OE2 GLU B 387 C1 OML B 501 1555 1555 1.47 CISPEP 1 PRO A 223 PRO A 224 0 -0.25 CISPEP 2 TRP A 425 SER A 426 0 -1.87 CISPEP 3 PRO B 223 PRO B 224 0 -1.68 CISPEP 4 TRP B 425 SER B 426 0 -2.01 CRYST1 168.265 168.265 95.504 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005943 0.003431 0.000000 0.00000 SCALE2 0.000000 0.006862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010471 0.00000