HEADER TRANSFERASE 10-MAY-22 7V0G TITLE STRUCTURE OF CAMP-DEPENDENT PROTEIN KINASE USING A MD-MX PROCEDURE, TITLE 2 PRODUCED USING 1.63 ANGSTROM DATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE FROM CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 9 CHAIN: I; COMPND 10 SYNONYM: PKI-ALPHA,CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, COMPND 11 MUSCLE/BRAIN ISOFORM; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: RESIDUES 5-23 OF THE PKA-C INHIBITOR PKI SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PROTEIN KINASE ACTIVITY, CAMP-DEPENDENT PROTEIN KINASE ACTIVITY, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.WYCH,P.C.AOTO,M.E.WALL REVDAT 3 25-OCT-23 7V0G 1 REMARK REVDAT 2 18-JAN-23 7V0G 1 JRNL REVDAT 1 07-DEC-22 7V0G 0 JRNL AUTH D.C.WYCH,P.C.AOTO,L.VU,A.M.WOLFF,D.L.MOBLEY,J.S.FRASER, JRNL AUTH 2 S.S.TAYLOR,M.E.WALL JRNL TITL MOLECULAR-DYNAMICS SIMULATION METHODS FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 50 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 36601807 JRNL DOI 10.1107/S2059798322011871 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 58640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.410 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0700 - 3.9300 0.98 4222 149 0.1183 0.1453 REMARK 3 2 3.9300 - 3.1200 0.99 4106 146 0.0989 0.1352 REMARK 3 3 3.1200 - 2.7200 0.99 4079 144 0.1057 0.1487 REMARK 3 4 2.7200 - 2.4700 0.99 4060 143 0.0990 0.1500 REMARK 3 5 2.4700 - 2.3000 1.00 4041 142 0.0916 0.1518 REMARK 3 6 2.3000 - 2.1600 1.00 4037 142 0.0932 0.1495 REMARK 3 7 2.1600 - 2.0500 1.00 4028 143 0.0994 0.1551 REMARK 3 8 2.0500 - 1.9600 1.00 4051 142 0.1072 0.1787 REMARK 3 9 1.9600 - 1.8900 1.00 4022 142 0.1201 0.1693 REMARK 3 10 1.8900 - 1.8200 1.00 4012 141 0.1550 0.2206 REMARK 3 11 1.8200 - 1.7700 1.00 4006 142 0.1774 0.2585 REMARK 3 12 1.7700 - 1.7200 0.99 4005 142 0.2007 0.2258 REMARK 3 13 1.7200 - 1.6700 1.00 3998 141 0.2168 0.2907 REMARK 3 14 1.6700 - 1.6300 1.00 3974 140 0.2284 0.3003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.177 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3214 REMARK 3 ANGLE : 0.994 4391 REMARK 3 CHIRALITY : 0.055 463 REMARK 3 PLANARITY : 0.011 562 REMARK 3 DIHEDRAL : 19.189 1234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1000265076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 285 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11583 REMARK 200 MONOCHROMATOR : WATER-COOLED FLAT DOUBLE SI(111) REMARK 200 KHOZU MONOCHROMATOR REMARK 200 OPTICS : PRIMARY MIRROR: FLAT; SECONDARY REMARK 200 MIRROR: UNCOOLED CYLLINDRICAL REMARK 200 SILICON BENT INTO TORROID; 2:1 REMARK 200 DEMAGNIFICATION; BOTH MIRRORS REMARK 200 COATED WITH PT/RH REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS, XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58663 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 47.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10560 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 1.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FJQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.05 M MES PH 5.2, 0.05 REMARK 280 M MGCL2, AND 0.005 M DTT, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.48800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.52900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.87200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.52900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.48800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.87200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E 1 REMARK 465 ASN E 2 REMARK 465 ALA E 3 REMARK 465 ALA E 4 REMARK 465 ALA E 5 REMARK 465 ALA E 6 REMARK 465 LYS E 7 REMARK 465 LYS E 8 REMARK 465 GLY E 9 REMARK 465 SER E 10 REMARK 465 GLU E 11 REMARK 465 GLN E 12 REMARK 465 GLU E 13 REMARK 465 SER E 14 REMARK 465 VAL E 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS E 16 CB CG CD CE NZ REMARK 470 GLU E 17 CB CG CD OE1 OE2 REMARK 470 ALA E 20 CB REMARK 470 LYS E 21 CG CD CE NZ REMARK 470 GLN E 242 CG CD OE1 NE2 REMARK 470 ILE E 244 CD1 REMARK 470 GLU E 248 CG CD OE1 OE2 REMARK 470 ARG E 256 CD NE CZ NH1 NH2 REMARK 470 LYS E 285 CG CD CE NZ REMARK 470 LYS E 309 CE NZ REMARK 470 LYS E 317 CG CD CE NZ REMARK 470 PHE E 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 319 CG CD CE NZ REMARK 470 GLU E 333 CG CD OE1 OE2 REMARK 470 ARG E 336 CG CD NE CZ NH1 NH2 REMARK 470 HIS I 23 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN E 177 O HOH E 515 1.45 REMARK 500 OE1 GLN E 245 O HOH E 501 1.79 REMARK 500 O LYS E 213 O HOH E 502 1.88 REMARK 500 OD1 ASN E 36 O HOH E 503 1.90 REMARK 500 OE2 GLU E 121 O HOH E 504 1.92 REMARK 500 O HOH E 628 O HOH E 831 1.92 REMARK 500 OD1 ASN E 36 O HOH E 505 1.94 REMARK 500 O HOH E 841 O HOH E 865 1.95 REMARK 500 OE2 GLU E 107 O HOH E 504 1.95 REMARK 500 O HOH E 950 O HOH E 954 1.96 REMARK 500 O HOH E 742 O HOH E 893 1.99 REMARK 500 O HOH E 948 O HOH E 953 2.02 REMARK 500 OG SER E 259 O HOH E 508 2.03 REMARK 500 O HOH E 945 O HOH E 948 2.03 REMARK 500 O HOH E 962 O HOH E 964 2.04 REMARK 500 O HOH E 867 O HOH E 942 2.07 REMARK 500 O HOH E 786 O HOH E 877 2.08 REMARK 500 O HOH E 741 O HOH E 824 2.10 REMARK 500 O4 PO4 E 402 O HOH E 510 2.10 REMARK 500 O HOH E 589 O HOH E 880 2.11 REMARK 500 OE1 GLU E 31 O HOH E 511 2.12 REMARK 500 O HOH E 722 O HOH E 895 2.13 REMARK 500 O HOH E 915 O HOH E 945 2.16 REMARK 500 O HOH E 625 O HOH E 930 2.16 REMARK 500 O HOH E 945 O HOH E 950 2.18 REMARK 500 O HOH E 866 O HOH E 943 2.18 REMARK 500 OE1 GLU E 24 O HOH E 514 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG E 165 -11.86 72.40 REMARK 500 ASP E 166 42.90 -153.45 REMARK 500 LYS E 168 157.80 179.19 REMARK 500 ASP E 184 82.74 67.43 REMARK 500 LEU E 273 47.98 -89.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 948 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH E 949 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH E 950 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH E 951 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH E 952 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH E 953 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH E 954 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH E 955 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH E 956 DISTANCE = 7.44 ANGSTROMS REMARK 525 HOH E 957 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH E 958 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH E 959 DISTANCE = 9.18 ANGSTROMS REMARK 525 HOH E 960 DISTANCE = 9.58 ANGSTROMS REMARK 525 HOH E 961 DISTANCE = 10.42 ANGSTROMS REMARK 525 HOH E 962 DISTANCE = 10.47 ANGSTROMS REMARK 525 HOH E 963 DISTANCE = 10.79 ANGSTROMS REMARK 525 HOH E 964 DISTANCE = 10.87 ANGSTROMS REMARK 525 HOH E 965 DISTANCE = 11.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN E 171 OD1 REMARK 620 2 ASP E 184 OD2 91.4 REMARK 620 3 ADP E 401 O1B 174.6 93.3 REMARK 620 4 ADP E 401 O1A 91.6 91.0 85.7 REMARK 620 5 PO4 E 402 O2 96.1 84.2 87.0 171.1 REMARK 620 6 HOH E 697 O 83.6 174.2 91.8 92.1 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 184 OD1 REMARK 620 2 ASP E 184 OD2 60.0 REMARK 620 3 ADP E 401 O2B 88.0 91.6 REMARK 620 4 PO4 E 402 O3 154.6 95.1 98.0 REMARK 620 5 HOH E 585 O 82.9 92.1 166.7 94.4 REMARK 620 6 HOH E 589 O 93.0 151.5 77.3 112.3 93.6 REMARK 620 7 HOH E 880 O 101.8 143.3 121.0 96.2 52.4 44.6 REMARK 620 N 1 2 3 4 5 6 DBREF 7V0G E 1 350 UNP P05132 KAPCA_MOUSE 2 351 DBREF 7V0G I 5 23 UNP P61925 IPKA_HUMAN 6 24 SEQRES 1 E 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 E 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 E 350 LEU LYS LYS TRP GLU THR PRO SER GLN ASN THR ALA GLN SEQRES 4 E 350 LEU ASP GLN PHE ASP ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 E 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU SER SEQRES 6 E 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 E 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 E 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 E 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 E 350 MET VAL MET GLU TYR VAL ALA GLY GLY GLU MET PHE SER SEQRES 11 E 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 E 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 E 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 E 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 E 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 E 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 E 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 E 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 E 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 E 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 E 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 E 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 E 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 E 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 E 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 E 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 E 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE THR GLU PHE SEQRES 1 I 19 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 19 ARG ARG ASN ALA ILE HIS MODRES 7V0G SEP E 139 SER MODIFIED RESIDUE MODRES 7V0G TPO E 197 THR MODIFIED RESIDUE MODRES 7V0G SEP E 338 SER MODIFIED RESIDUE HET SEP E 139 14 HET TPO E 197 17 HET SEP E 338 13 HET ADP E 401 38 HET PO4 E 402 5 HET MG E 403 1 HET MG E 404 1 HET PO4 E 405 5 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 MG 2(MG 2+) FORMUL 8 HOH *495(H2 O) HELIX 1 AA1 LYS E 16 THR E 32 1 17 HELIX 2 AA2 GLN E 39 ASP E 41 5 3 HELIX 3 AA3 LYS E 76 LEU E 82 1 7 HELIX 4 AA4 GLN E 84 GLN E 96 1 13 HELIX 5 AA5 GLU E 127 GLY E 136 1 10 HELIX 6 AA6 SEP E 139 LEU E 160 1 22 HELIX 7 AA7 LYS E 168 GLU E 170 5 3 HELIX 8 AA8 THR E 201 LEU E 205 5 5 HELIX 9 AA9 ALA E 206 LEU E 211 1 6 HELIX 10 AB1 LYS E 217 GLY E 234 1 18 HELIX 11 AB2 GLN E 242 GLY E 253 1 12 HELIX 12 AB3 SER E 262 LEU E 273 1 12 HELIX 13 AB4 ASP E 276 ARG E 280 5 5 HELIX 14 AB5 VAL E 288 ASN E 293 1 6 HELIX 15 AB6 HIS E 294 ALA E 298 5 5 HELIX 16 AB7 ASP E 301 GLN E 307 1 7 HELIX 17 AB8 THR I 6 ALA I 12 1 7 SHEET 1 AA1 5 PHE E 43 THR E 51 0 SHEET 2 AA1 5 ARG E 56 HIS E 62 -1 O LEU E 59 N LYS E 47 SHEET 3 AA1 5 HIS E 68 ASP E 75 -1 O MET E 71 N MET E 58 SHEET 4 AA1 5 ASN E 115 GLU E 121 -1 O MET E 120 N ALA E 70 SHEET 5 AA1 5 LEU E 106 LYS E 111 -1 N PHE E 108 O VAL E 119 SHEET 1 AA2 2 LEU E 162 ILE E 163 0 SHEET 2 AA2 2 LYS E 189 ARG E 190 -1 O LYS E 189 N ILE E 163 SHEET 1 AA3 2 LEU E 172 ILE E 174 0 SHEET 2 AA3 2 ILE E 180 VAL E 182 -1 O GLN E 181 N LEU E 173 LINK C PHE E 138 N SEP E 139 1555 1555 1.33 LINK C SEP E 139 N GLU E 140 1555 1555 1.33 LINK C TRP E 196 N TPO E 197 1555 1555 1.32 LINK C TPO E 197 N LEU E 198 1555 1555 1.33 LINK C VAL E 337 N SEP E 338 1555 1555 1.32 LINK C SEP E 338 N ILE E 339 1555 1555 1.33 LINK OD1 ASN E 171 MG MG E 404 1555 1555 2.14 LINK OD1 ASP E 184 MG MG E 403 1555 1555 2.27 LINK OD2 ASP E 184 MG MG E 403 1555 1555 2.09 LINK OD2 ASP E 184 MG MG E 404 1555 1555 2.09 LINK O2B ADP E 401 MG MG E 403 1555 1555 2.23 LINK O1B ADP E 401 MG MG E 404 1555 1555 2.11 LINK O1A ADP E 401 MG MG E 404 1555 1555 1.97 LINK O3 PO4 E 402 MG MG E 403 1555 1555 2.08 LINK O2 PO4 E 402 MG MG E 404 1555 1555 2.02 LINK MG MG E 403 O AHOH E 585 1555 1555 2.06 LINK MG MG E 403 O HOH E 589 1555 1555 2.03 LINK MG MG E 403 O HOH E 880 1555 1555 3.00 LINK MG MG E 404 O HOH E 697 1555 1555 2.11 CRYST1 58.976 79.744 99.058 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010095 0.00000