HEADER TRANSCRIPTION 10-AUG-21 7V2V TITLE CRYSTAL STRUCTURE OF VPSR DISPLAY NOVEL DIMERIC ARCHITECTURE AND C-DI- TITLE 2 GMP BINDING: MECHANISTIC IMPLICATIONS IN OLIGOMERIZATION, ATPASE TITLE 3 ACTIVITY AND DNA BINDING. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPSR; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: VPSR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BIOFILM, FLUORESCENCE QUENCHING, ATPASE ACTIVITY, SECOND-MESSENGER, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.CHAKRABORTTY,U.SEN,S.R.CHOWDHURY REVDAT 2 29-NOV-23 7V2V 1 REMARK REVDAT 1 06-APR-22 7V2V 0 JRNL AUTH T.CHAKRABORTTY,S.ROY CHOWDHURY,B.GHOSH,U.SEN JRNL TITL CRYSTAL STRUCTURE OF VPSR REVEALED NOVEL DIMERIC JRNL TITL 2 ARCHITECTURE AND C-DI-GMP BINDING SITE: MECHANISTIC JRNL TITL 3 IMPLICATIONS IN OLIGOMERIZATION, ATPASE ACTIVITY AND DNA JRNL TITL 4 BINDING. JRNL REF J.MOL.BIOL. V. 434 67354 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 34774564 JRNL DOI 10.1016/J.JMB.2021.167354 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 21412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 3686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8133 - 8.6594 0.83 1816 184 0.1400 0.2005 REMARK 3 2 8.6594 - 6.8819 0.82 1775 178 0.1857 0.2179 REMARK 3 3 6.8819 - 6.0144 0.83 1783 182 0.2384 0.3404 REMARK 3 4 6.0144 - 5.4657 0.83 1821 180 0.2797 0.3005 REMARK 3 5 5.4657 - 5.0745 0.81 1765 190 0.2459 0.2915 REMARK 3 6 5.0745 - 4.7757 0.81 1762 186 0.2398 0.2250 REMARK 3 7 4.7757 - 4.5368 0.81 1734 194 0.2614 0.2727 REMARK 3 8 4.5368 - 4.3395 0.81 1810 178 0.2516 0.3145 REMARK 3 9 4.3395 - 4.1726 0.81 1777 188 0.2776 0.3429 REMARK 3 10 4.1726 - 4.0287 0.82 1750 176 0.2993 0.3146 REMARK 3 11 4.0287 - 3.9028 0.83 1769 156 0.3180 0.2895 REMARK 3 12 3.9028 - 3.7913 0.81 1778 214 0.3333 0.3257 REMARK 3 13 3.7913 - 3.6916 0.82 1767 188 0.3259 0.3804 REMARK 3 14 3.6916 - 3.6015 0.82 1758 172 0.3468 0.3425 REMARK 3 15 3.6015 - 3.5197 0.81 1741 188 0.3673 0.3728 REMARK 3 16 3.5197 - 3.4448 0.82 1814 176 0.3495 0.3378 REMARK 3 17 3.4448 - 3.3759 0.81 1710 176 0.3821 0.3666 REMARK 3 18 3.3759 - 3.3123 0.82 1843 192 0.3993 0.3733 REMARK 3 19 3.3123 - 3.2531 0.81 1724 198 0.4092 0.4318 REMARK 3 20 3.2531 - 3.1980 0.81 1802 190 0.4306 0.3995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5988 REMARK 3 ANGLE : 0.879 8106 REMARK 3 CHIRALITY : 0.031 926 REMARK 3 PLANARITY : 0.004 1046 REMARK 3 DIHEDRAL : 14.941 2236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.8610 141.7261 -1.6190 REMARK 3 T TENSOR REMARK 3 T11: 1.1472 T22: 1.2280 REMARK 3 T33: 0.9413 T12: -0.0628 REMARK 3 T13: 0.0625 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 9.5003 L22: 9.4415 REMARK 3 L33: 5.7279 L12: -1.1699 REMARK 3 L13: -1.6461 L23: -1.4367 REMARK 3 S TENSOR REMARK 3 S11: 0.6938 S12: 0.9435 S13: 0.5253 REMARK 3 S21: -0.2846 S22: -0.2360 S23: 0.7560 REMARK 3 S31: 0.4353 S32: -0.9798 S33: -0.6774 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.0102 157.5133 19.7915 REMARK 3 T TENSOR REMARK 3 T11: 1.1953 T22: 0.9139 REMARK 3 T33: 0.6075 T12: 0.0109 REMARK 3 T13: 0.0894 T23: -0.1246 REMARK 3 L TENSOR REMARK 3 L11: 6.0749 L22: 8.8874 REMARK 3 L33: 4.2703 L12: 2.4633 REMARK 3 L13: -0.4421 L23: -0.6813 REMARK 3 S TENSOR REMARK 3 S11: 0.1218 S12: 0.0796 S13: 0.0893 REMARK 3 S21: 0.0923 S22: 0.2078 S23: 0.5096 REMARK 3 S31: 0.2047 S32: 0.1598 S33: -0.3304 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -79.3237 135.5198 25.2481 REMARK 3 T TENSOR REMARK 3 T11: 1.6584 T22: 1.4534 REMARK 3 T33: 1.2938 T12: -0.0843 REMARK 3 T13: 0.2355 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 8.5827 L22: 2.0462 REMARK 3 L33: 6.5077 L12: 1.2199 REMARK 3 L13: 1.7465 L23: -0.1884 REMARK 3 S TENSOR REMARK 3 S11: 0.6804 S12: -0.3623 S13: 0.5055 REMARK 3 S21: 0.2925 S22: -0.2262 S23: 0.9140 REMARK 3 S31: -0.4388 S32: -0.8191 S33: -0.4696 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 88 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -76.2469 135.3643 15.8902 REMARK 3 T TENSOR REMARK 3 T11: 1.7668 T22: 1.2591 REMARK 3 T33: 1.2430 T12: -0.1941 REMARK 3 T13: 0.0171 T23: 0.1802 REMARK 3 L TENSOR REMARK 3 L11: 7.8225 L22: 5.8551 REMARK 3 L33: 3.2262 L12: -3.8534 REMARK 3 L13: -0.1180 L23: 0.6862 REMARK 3 S TENSOR REMARK 3 S11: 0.6347 S12: -0.3610 S13: -1.5705 REMARK 3 S21: -2.2574 S22: -0.1874 S23: 0.9480 REMARK 3 S31: 0.3305 S32: -0.3372 S33: -0.2636 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 152 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.3774 125.6372 2.7729 REMARK 3 T TENSOR REMARK 3 T11: 1.5093 T22: 1.1945 REMARK 3 T33: 0.6308 T12: 0.1999 REMARK 3 T13: 0.0299 T23: -0.2241 REMARK 3 L TENSOR REMARK 3 L11: 3.9964 L22: 6.2729 REMARK 3 L33: 0.1435 L12: -0.9269 REMARK 3 L13: 0.7117 L23: -0.4361 REMARK 3 S TENSOR REMARK 3 S11: 0.2409 S12: -0.0276 S13: -0.1893 REMARK 3 S21: -0.0080 S22: 0.1552 S23: -0.1969 REMARK 3 S31: -0.3684 S32: 0.4149 S33: -0.3841 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8-8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BENT CYLINDRICAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21513 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.12300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NY5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMS BICINE PH 8.8 300 NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.20033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.40067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 PHE A 5 REMARK 465 ARG A 6 REMARK 465 MET A 7 REMARK 465 ASP A 8 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 SER D -10 REMARK 465 SER D -9 REMARK 465 GLY D -8 REMARK 465 LEU D -7 REMARK 465 VAL D -6 REMARK 465 PRO D -5 REMARK 465 ARG D -4 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 3 REMARK 465 GLN D 4 REMARK 465 PHE D 5 REMARK 465 ARG D 6 REMARK 465 MET D 7 REMARK 465 ASP D 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 103 N ILE A 105 2.19 REMARK 500 O LEU A 117 OG1 THR A 120 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 197 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 11 61.19 -104.92 REMARK 500 PRO A 23 1.87 -57.75 REMARK 500 TRP A 24 -0.07 -159.28 REMARK 500 ARG A 34 -170.72 58.42 REMARK 500 LEU A 60 53.16 -105.14 REMARK 500 SER A 61 48.08 -88.61 REMARK 500 GLU A 64 71.95 63.79 REMARK 500 PHE A 65 85.57 -166.76 REMARK 500 SER A 66 -168.26 51.46 REMARK 500 LEU A 67 -37.98 -162.51 REMARK 500 HIS A 77 11.84 -162.70 REMARK 500 LYS A 78 45.43 -79.66 REMARK 500 GLN A 79 -86.79 -84.96 REMARK 500 ASP A 94 -66.44 -131.22 REMARK 500 THR A 95 -107.30 -71.15 REMARK 500 ASN A 102 34.90 -88.87 REMARK 500 PHE A 103 67.73 1.95 REMARK 500 CYS A 104 47.11 -63.85 REMARK 500 ILE A 105 -68.87 53.32 REMARK 500 PRO A 111 82.14 -63.12 REMARK 500 ASP A 114 61.19 -52.48 REMARK 500 ALA A 115 -30.00 179.65 REMARK 500 TRP A 135 89.37 -157.06 REMARK 500 ALA A 141 -130.35 57.52 REMARK 500 LEU A 146 -47.12 59.05 REMARK 500 ILE A 147 -90.63 -122.26 REMARK 500 GLU A 149 83.74 -166.54 REMARK 500 SER A 150 -138.53 -115.15 REMARK 500 ASP A 167 40.28 -76.51 REMARK 500 SER A 192 -9.96 65.69 REMARK 500 PRO A 197 159.54 -32.69 REMARK 500 ALA A 205 -101.12 -99.94 REMARK 500 MET A 206 -56.61 58.93 REMARK 500 SER A 207 168.60 61.52 REMARK 500 LYS A 209 -73.58 -66.59 REMARK 500 LEU A 215 -38.77 -137.71 REMARK 500 PHE A 216 -73.68 -147.66 REMARK 500 GLU A 220 -118.48 -80.66 REMARK 500 GLU A 222 70.56 -51.07 REMARK 500 GLU A 223 156.06 63.16 REMARK 500 GLN A 225 -72.46 55.90 REMARK 500 GLN A 226 91.96 58.47 REMARK 500 ILE A 283 -37.69 42.59 REMARK 500 ASN A 301 23.10 -75.33 REMARK 500 SER A 309 -127.10 -106.60 REMARK 500 LEU A 310 32.47 -97.52 REMARK 500 LYS A 311 -75.44 -60.31 REMARK 500 TRP A 352 75.31 51.21 REMARK 500 ASN A 355 -117.12 51.80 REMARK 500 ASP A 376 -147.95 -116.81 REMARK 500 REMARK 500 THIS ENTRY HAS 107 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 7V2V A 1 382 UNP Q9AQ41 Q9AQ41_VIBCL 1 382 DBREF 7V2V D 1 382 UNP Q9AQ41 Q9AQ41_VIBCL 1 382 SEQADV 7V2V HIS A -16 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS A -15 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS A -14 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS A -13 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS A -12 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS A -11 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V SER A -10 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V SER A -9 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V GLY A -8 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V LEU A -7 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V VAL A -6 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V PRO A -5 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V ARG A -4 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V GLY A -3 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V SER A -2 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS A -1 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V MET A 0 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS D -16 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS D -15 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS D -14 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS D -13 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS D -12 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS D -11 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V SER D -10 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V SER D -9 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V GLY D -8 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V LEU D -7 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V VAL D -6 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V PRO D -5 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V ARG D -4 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V GLY D -3 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V SER D -2 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V HIS D -1 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V2V MET D 0 UNP Q9AQ41 EXPRESSION TAG SEQRES 1 A 399 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 399 GLY SER HIS MET MET SER THR GLN PHE ARG MET ASP SER SEQRES 3 A 399 VAL PRO GLY SER LEU VAL VAL VAL GLY GLY THR TYR GLU SEQRES 4 A 399 PRO TRP LEU PRO VAL LEU GLU LYS VAL GLY TRP ARG CYS SEQRES 5 A 399 THR GLN VAL ALA ASP LEU ARG LYS PRO ASP ALA LEU PHE SEQRES 6 A 399 VAL GLU THR GLY PRO CYS ILE GLY ILE VAL ASP LEU SER SEQRES 7 A 399 HIS ASP GLU PHE SER LEU ASN GLY ILE ALA ASN LEU VAL SEQRES 8 A 399 SER SER HIS LYS GLN VAL ARG TRP LEU ALA PHE ILE ARG SEQRES 9 A 399 GLU ALA GLN LEU SER SER ASP THR ILE CYS GLN PHE ILE SEQRES 10 A 399 VAL ASN PHE CYS ILE ASP PHE PHE THR ALA PRO ILE PRO SEQRES 11 A 399 ASP ALA GLN LEU LEU SER THR ILE GLY HIS GLN LEU GLY SEQRES 12 A 399 MET LEU LYS LEU GLU LYS LYS VAL TRP PRO HIS PHE GLY SEQRES 13 A 399 SER ALA GLY ASN MET GLY LEU ILE GLY GLU SER MET PRO SEQRES 14 A 399 MET LYS ARG LEU ARG ASP GLN ILE LYS ARG ILE GLY PRO SEQRES 15 A 399 THR ASP VAL SER ILE LEU ILE TYR GLY GLU SER GLY THR SEQRES 16 A 399 GLY LYS GLU THR VAL ALA LYS ALA ILE HIS LYS THR SER SEQRES 17 A 399 SER ARG ALA GLN LYS PRO PHE ILE SER VAL ASN CYS ARG SEQRES 18 A 399 ALA MET SER GLU LYS ARG LEU GLU SER GLU LEU PHE GLY SEQRES 19 A 399 LEU GLY GLU THR GLU GLU GLY GLN GLN PRO PHE LEU LEU SEQRES 20 A 399 GLN ALA ASP GLY GLY THR LEU LEU LEU ASN ASP ILE LEU SEQRES 21 A 399 THR LEU PRO LYS SER GLN GLN LEU ASN LEU LEU ARG PHE SEQRES 22 A 399 LEU GLN GLU GLY THR VAL GLU THR ARG GLN GLY VAL ARG SEQRES 23 A 399 ALA VAL ASP VAL ARG ILE LEU ALA ALA ASN SER SER ASP SEQRES 24 A 399 ILE GLU LYS ALA LEU ILE ASP GLY ASP PHE ASN GLU GLU SEQRES 25 A 399 LEU TYR HIS TYR ILE ASN VAL LEU ARG ILE ASN VAL PRO SEQRES 26 A 399 SER LEU LYS GLU ARG ALA SER ASP ILE VAL LEU LEU ALA SEQRES 27 A 399 LYS HIS PHE LEU GLN GLU TYR SER LYS GLU TYR ASN ALA SEQRES 28 A 399 GLN ALA ARG SER PHE SER ASP ASP ALA VAL ARG GLY LEU SEQRES 29 A 399 THR ARG TYR HIS TRP PRO GLY ASN VAL ARG GLU LEU MET SEQRES 30 A 399 ASN GLN ILE LYS ARG VAL VAL LEU MET SER ASP THR VAL SEQRES 31 A 399 VAL LEU ASP GLU SER GLN LEU ASP LEU SEQRES 1 D 399 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 D 399 GLY SER HIS MET MET SER THR GLN PHE ARG MET ASP SER SEQRES 3 D 399 VAL PRO GLY SER LEU VAL VAL VAL GLY GLY THR TYR GLU SEQRES 4 D 399 PRO TRP LEU PRO VAL LEU GLU LYS VAL GLY TRP ARG CYS SEQRES 5 D 399 THR GLN VAL ALA ASP LEU ARG LYS PRO ASP ALA LEU PHE SEQRES 6 D 399 VAL GLU THR GLY PRO CYS ILE GLY ILE VAL ASP LEU SER SEQRES 7 D 399 HIS ASP GLU PHE SER LEU ASN GLY ILE ALA ASN LEU VAL SEQRES 8 D 399 SER SER HIS LYS GLN VAL ARG TRP LEU ALA PHE ILE ARG SEQRES 9 D 399 GLU ALA GLN LEU SER SER ASP THR ILE CYS GLN PHE ILE SEQRES 10 D 399 VAL ASN PHE CYS ILE ASP PHE PHE THR ALA PRO ILE PRO SEQRES 11 D 399 ASP ALA GLN LEU LEU SER THR ILE GLY HIS GLN LEU GLY SEQRES 12 D 399 MET LEU LYS LEU GLU LYS LYS VAL TRP PRO HIS PHE GLY SEQRES 13 D 399 SER ALA GLY ASN MET GLY LEU ILE GLY GLU SER MET PRO SEQRES 14 D 399 MET LYS ARG LEU ARG ASP GLN ILE LYS ARG ILE GLY PRO SEQRES 15 D 399 THR ASP VAL SER ILE LEU ILE TYR GLY GLU SER GLY THR SEQRES 16 D 399 GLY LYS GLU THR VAL ALA LYS ALA ILE HIS LYS THR SER SEQRES 17 D 399 SER ARG ALA GLN LYS PRO PHE ILE SER VAL ASN CYS ARG SEQRES 18 D 399 ALA MET SER GLU LYS ARG LEU GLU SER GLU LEU PHE GLY SEQRES 19 D 399 LEU GLY GLU THR GLU GLU GLY GLN GLN PRO PHE LEU LEU SEQRES 20 D 399 GLN ALA ASP GLY GLY THR LEU LEU LEU ASN ASP ILE LEU SEQRES 21 D 399 THR LEU PRO LYS SER GLN GLN LEU ASN LEU LEU ARG PHE SEQRES 22 D 399 LEU GLN GLU GLY THR VAL GLU THR ARG GLN GLY VAL ARG SEQRES 23 D 399 ALA VAL ASP VAL ARG ILE LEU ALA ALA ASN SER SER ASP SEQRES 24 D 399 ILE GLU LYS ALA LEU ILE ASP GLY ASP PHE ASN GLU GLU SEQRES 25 D 399 LEU TYR HIS TYR ILE ASN VAL LEU ARG ILE ASN VAL PRO SEQRES 26 D 399 SER LEU LYS GLU ARG ALA SER ASP ILE VAL LEU LEU ALA SEQRES 27 D 399 LYS HIS PHE LEU GLN GLU TYR SER LYS GLU TYR ASN ALA SEQRES 28 D 399 GLN ALA ARG SER PHE SER ASP ASP ALA VAL ARG GLY LEU SEQRES 29 D 399 THR ARG TYR HIS TRP PRO GLY ASN VAL ARG GLU LEU MET SEQRES 30 D 399 ASN GLN ILE LYS ARG VAL VAL LEU MET SER ASP THR VAL SEQRES 31 D 399 VAL LEU ASP GLU SER GLN LEU ASP LEU HET SO4 A 501 5 HET SO4 D 501 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) HELIX 1 AA1 LEU A 25 VAL A 31 1 7 HELIX 2 AA2 LEU A 41 GLY A 52 1 12 HELIX 3 AA3 LEU A 67 SER A 76 1 10 HELIX 4 AA4 ILE A 96 PHE A 103 5 8 HELIX 5 AA5 GLN A 116 TRP A 135 1 20 HELIX 6 AA6 MET A 151 GLY A 164 1 14 HELIX 7 AA7 GLY A 179 SER A 191 1 13 HELIX 8 AA8 MET A 206 GLU A 214 1 9 HELIX 9 AA9 PRO A 227 ALA A 232 1 6 HELIX 10 AB1 ASP A 241 LEU A 245 5 5 HELIX 11 AB2 PRO A 246 LEU A 257 1 12 HELIX 12 AB3 ILE A 283 ASP A 289 1 7 HELIX 13 AB4 ASN A 293 ASN A 301 1 9 HELIX 14 AB5 ARG A 313 ASN A 333 1 21 HELIX 15 AB6 SER A 340 TYR A 350 1 11 HELIX 16 AB7 GLY A 354 LEU A 368 1 15 HELIX 17 AB8 TYR D 21 TRP D 24 5 4 HELIX 18 AB9 LEU D 25 TRP D 33 1 9 HELIX 19 AC1 LEU D 41 GLY D 52 1 12 HELIX 20 AC2 SER D 66 HIS D 77 1 12 HELIX 21 AC3 THR D 95 PHE D 103 5 9 HELIX 22 AC4 PRO D 113 ALA D 115 5 3 HELIX 23 AC5 GLN D 116 HIS D 123 1 8 HELIX 24 AC6 GLN D 124 TRP D 135 1 12 HELIX 25 AC7 GLY D 139 LEU D 146 5 8 HELIX 26 AC8 MET D 151 ILE D 163 1 13 HELIX 27 AC9 GLY D 179 SER D 191 1 13 HELIX 28 AD1 LYS D 209 GLU D 214 1 6 HELIX 29 AD2 PRO D 227 ALA D 232 1 6 HELIX 30 AD3 PRO D 246 GLU D 259 1 14 HELIX 31 AD4 ASP D 282 ASP D 289 1 8 HELIX 32 AD5 ASN D 293 ASN D 301 1 9 HELIX 33 AD6 ARG D 313 TYR D 332 1 20 HELIX 34 AD7 PHE D 339 TYR D 350 1 12 HELIX 35 AD8 ASN D 355 LEU D 368 1 14 SHEET 1 AA1 4 GLN A 37 VAL A 38 0 SHEET 2 AA1 4 GLY A 12 VAL A 15 1 N LEU A 14 O VAL A 38 SHEET 3 AA1 4 ILE A 55 LEU A 60 1 O ILE A 55 N SER A 13 SHEET 4 AA1 4 LEU A 83 GLU A 88 1 O ARG A 87 N VAL A 58 SHEET 1 AA2 5 PHE A 198 ASN A 202 0 SHEET 2 AA2 5 THR A 236 ASN A 240 1 O LEU A 238 N ILE A 199 SHEET 3 AA2 5 ARG A 274 ASN A 279 1 O ALA A 278 N LEU A 239 SHEET 4 AA2 5 ILE A 170 TYR A 173 1 N ILE A 172 O ALA A 277 SHEET 5 AA2 5 LEU A 303 ASN A 306 1 O LEU A 303 N LEU A 171 SHEET 1 AA3 2 SER A 338 PHE A 339 0 SHEET 2 AA3 2 VAL A 374 LEU A 375 1 O LEU A 375 N SER A 338 SHEET 1 AA4 4 GLN D 37 VAL D 38 0 SHEET 2 AA4 4 SER D 13 VAL D 15 1 N LEU D 14 O VAL D 38 SHEET 3 AA4 4 ILE D 55 LEU D 60 1 O ILE D 57 N SER D 13 SHEET 4 AA4 4 LEU D 83 GLU D 88 1 O ARG D 87 N LEU D 60 SHEET 1 AA5 5 PHE D 198 ASN D 202 0 SHEET 2 AA5 5 THR D 236 ASN D 240 1 O LEU D 238 N ILE D 199 SHEET 3 AA5 5 ARG D 274 ASN D 279 1 O LEU D 276 N LEU D 237 SHEET 4 AA5 5 ILE D 170 GLY D 174 1 N ILE D 172 O ALA D 277 SHEET 5 AA5 5 LEU D 303 VAL D 307 1 O VAL D 307 N TYR D 173 CRYST1 119.921 119.921 81.601 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008339 0.004814 0.000000 0.00000 SCALE2 0.000000 0.009629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012255 0.00000