HEADER ELECTRON TRANSPORT 12-AUG-21 7V43 TITLE CRYSTAL STRUCTURE OF CLASS I P450 MONOOXYGENASE (P450TOL) FROM TITLE 2 RHODOCOCCUS COPROPHILUS TC-2 IN COMPLEX WITH PARA-CHLOROTOLUENE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: P450TOL MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS COPROPHILUS; SOURCE 3 ORGANISM_TAXID: 38310; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET I KEYWDS HEM, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR L.L.ZHANG,J.W.HUANG,W.D.LIU,C.C.CHEN,R.T.GUO REVDAT 2 29-NOV-23 7V43 1 REMARK REVDAT 1 22-JUN-22 7V43 0 JRNL AUTH C.C.CHEN,M.DAI,L.ZHANG,J.ZHAO,W.ZENG,M.SHI,J.W.HUANG,W.LIU, JRNL AUTH 2 R.T.GUO,A.LI JRNL TITL MOLECULAR BASIS FOR A TOLUENE MONOOXYGENASE TO GOVERN JRNL TITL 2 SUBSTRATE SELECTIVITY JRNL REF ACS CATALYSIS V. 12 2831 2022 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.1C05845 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 103417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5435 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 325 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 724 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.23000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.733 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3613 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3334 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4925 ; 2.088 ; 1.670 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7711 ; 1.575 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 6.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;30.941 ;21.729 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;11.767 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;15.956 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4116 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 804 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7V43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : LN2 COOLED SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108878 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1CPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA/K PHOSPHATE, GLYCEROL, PH 6.9, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.66200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.83100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.83100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.66200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 648 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1176 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1280 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1322 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 THR A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 43 66.66 -157.41 REMARK 500 VAL A 165 -75.36 -87.89 REMARK 500 PHE A 168 -70.65 -150.85 REMARK 500 THR A 278 -76.84 -121.78 REMARK 500 LYS A 378 21.09 -79.79 REMARK 500 CYS A 389 125.61 -39.62 REMARK 500 PHE A 426 -92.98 -114.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1320 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1321 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1322 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1323 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1324 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 389 SG REMARK 620 2 HEM A 502 NA 101.5 REMARK 620 3 HEM A 502 NB 92.3 90.0 REMARK 620 4 HEM A 502 NC 91.0 167.5 89.3 REMARK 620 5 HEM A 502 ND 104.9 88.1 162.7 89.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C4O A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 DBREF1 7V43 A 1 440 UNP A0A088FL33_9NOCA DBREF2 7V43 A A0A088FL33 1 440 SEQRES 1 A 440 MET THR THR VAL GLU SER ASN THR THR ALA ALA ILE PRO SEQRES 2 A 440 ASP GLU ILE ALA ARG GLN ILE VAL LEU PRO GLU GLY HIS SEQRES 3 A 440 LYS ASP ASN VAL PRO LEU PHE GLU ALA TYR ARG TRP LEU SEQRES 4 A 440 ARG GLU ASN GLN PRO LEU GLY GLN ALA ARG VAL GLU GLY SEQRES 5 A 440 TYR ASP PRO LEU TRP LEU ILE THR LYS TYR ALA ASP LEU SEQRES 6 A 440 MET GLU VAL GLU ARG GLN PRO GLN ILE PHE ALA ALA GLY SEQRES 7 A 440 GLY GLY GLU ASP LYS GLY SER ASN ASN PRO ILE LEU ALA SEQRES 8 A 440 ASN GLN ALA GLY ASP GLU PHE THR ARG GLN LEU LEU GLY SEQRES 9 A 440 GLY ASN LEU ARG ILE LEU ASP ALA LEU PRO TYR LEU ASP SEQRES 10 A 440 GLN PRO GLU HIS SER VAL VAL LYS ASP VAL ALA PHE ASP SEQRES 11 A 440 TRP PHE ARG PRO ALA ASN LEU LYS LYS TRP GLU ASP ARG SEQRES 12 A 440 ILE ARG GLU THR ALA ARG ALA SER ILE ASP ARG LEU LEU SEQRES 13 A 440 ALA GLY GLY PRO ASP LEU ASP ALA VAL GLN GLU PHE ALA SEQRES 14 A 440 VAL PHE PHE PRO LEU ARG VAL ILE MET SER LEU PHE GLY SEQRES 15 A 440 VAL PRO GLU GLU ASP GLU PRO ARG MET MET ALA LEU THR SEQRES 16 A 440 GLN ASP PHE PHE GLY VAL ALA ASP PRO ASP ALA GLN ARG SEQRES 17 A 440 ASP ASP ILE GLU ALA LEU SER PRO ASP ALA ALA ALA GLN SEQRES 18 A 440 GLN TRP ALA ALA THR ILE ALA ASP PHE TYR ALA TYR PHE SEQRES 19 A 440 ASP VAL LEU VAL GLU SER ARG ARG ALA GLU PRO ARG ASP SEQRES 20 A 440 ASP LEU ALA THR LEU ILE ALA VAL ALA LYS ASP GLU ASN SEQRES 21 A 440 GLY GLU TYR PHE PRO LYS THR PHE ALA TYR GLY TRP PHE SEQRES 22 A 440 VAL ALA ILE ALA THR ALA GLY HIS ASP THR THR ALA SER SEQRES 23 A 440 THR LEU ALA GLY CYS LEU GLN SER LEU ALA ALA HIS PRO SEQRES 24 A 440 GLU VAL LEU ASP ARG VAL LYS GLY ASP PRO ASP LEU ILE SEQRES 25 A 440 PRO ASP LEU VAL ASN GLU SER LEU ARG ILE VAL SER PRO SEQRES 26 A 440 VAL LYS HIS PHE THR ARG VAL ALA LEU GLN ASP TYR GLU SEQRES 27 A 440 MET ARG GLY GLN LYS ILE LYS ALA GLY ASP ARG LEU MET SEQRES 28 A 440 LEU LEU PHE GLN SER GLY ASN ARG ASP ALA GLU VAL PHE SEQRES 29 A 440 ASP ARG PRO ASP ASP PHE ASP ILE ASP ARG ARG PRO ASN SEQRES 30 A 440 LYS HIS ILE ALA PHE GLY TYR GLY PRO HIS MET CYS ILE SEQRES 31 A 440 GLY GLN HIS LEU ALA LYS LEU GLU LEU LYS VAL MET LEU SEQRES 32 A 440 GLN GLU LEU LEU PRO HIS LEU GLU ARG VAL GLU VAL SER SEQRES 33 A 440 GLY GLU PRO LYS LEU ILE GLN THR ASN PHE VAL GLY GLY SEQRES 34 A 440 LEU ARG LYS LEU PRO VAL HIS LEU THR PHE SER HET C4O A 501 8 HET HEM A 502 43 HET PO4 A 503 5 HET GOL A 504 6 HETNAM C4O 1-CHLORANYL-4-METHYL-BENZENE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN C4O 1-CHLORO-4-METHYLBENZENE HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 C4O C7 H7 CL FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *724(H2 O) HELIX 1 AA1 PRO A 13 LEU A 22 1 10 HELIX 2 AA2 PRO A 23 LYS A 27 5 5 HELIX 3 AA3 ASP A 28 GLN A 43 1 16 HELIX 4 AA4 LYS A 61 ARG A 70 1 10 HELIX 5 AA5 ASN A 92 GLY A 104 1 13 HELIX 6 AA6 ALA A 112 LEU A 116 5 5 HELIX 7 AA7 PRO A 119 ASP A 126 1 8 HELIX 8 AA8 VAL A 127 ALA A 128 5 2 HELIX 9 AA9 PHE A 129 PHE A 132 5 4 HELIX 10 AB1 ARG A 133 LYS A 138 1 6 HELIX 11 AB2 TRP A 140 GLY A 158 1 19 HELIX 12 AB3 VAL A 170 GLY A 182 1 13 HELIX 13 AB4 PRO A 184 GLU A 186 5 3 HELIX 14 AB5 ASP A 187 GLY A 200 1 14 HELIX 15 AB6 ASP A 217 GLU A 244 1 28 HELIX 16 AB7 ASP A 248 VAL A 255 1 8 HELIX 17 AB8 PRO A 265 THR A 278 1 14 HELIX 18 AB9 THR A 278 HIS A 298 1 21 HELIX 19 AC1 HIS A 298 ASP A 308 1 11 HELIX 20 AC2 LEU A 311 SER A 324 1 14 HELIX 21 AC3 LEU A 353 ASN A 358 1 6 HELIX 22 AC4 GLY A 391 LEU A 407 1 17 SHEET 1 AA1 5 LEU A 45 ALA A 48 0 SHEET 2 AA1 5 LEU A 56 ILE A 59 -1 O LEU A 56 N ALA A 48 SHEET 3 AA1 5 ARG A 349 LEU A 352 1 O MET A 351 N TRP A 57 SHEET 4 AA1 5 THR A 330 ALA A 333 -1 N ARG A 331 O LEU A 350 SHEET 5 AA1 5 PHE A 75 ALA A 76 -1 N ALA A 76 O VAL A 332 SHEET 1 AA2 3 ASP A 161 ASP A 163 0 SHEET 2 AA2 3 PRO A 434 PHE A 439 -1 O VAL A 435 N LEU A 162 SHEET 3 AA2 3 LEU A 410 VAL A 415 -1 N GLU A 411 O THR A 438 SHEET 1 AA3 2 TYR A 337 MET A 339 0 SHEET 2 AA3 2 GLN A 342 ILE A 344 -1 O ILE A 344 N TYR A 337 SHEET 1 AA4 2 LYS A 420 LEU A 421 0 SHEET 2 AA4 2 LEU A 430 LYS A 432 -1 O ARG A 431 N LYS A 420 LINK SG CYS A 389 FE HEM A 502 1555 1555 2.39 CISPEP 1 GLN A 118 PRO A 119 0 6.03 CISPEP 2 ARG A 375 PRO A 376 0 -7.81 SITE 1 AC1 4 ALA A 275 ALA A 279 PHE A 426 HEM A 502 SITE 1 AC2 24 GLU A 69 LEU A 113 PRO A 114 HIS A 121 SITE 2 AC2 24 PHE A 132 GLY A 280 THR A 283 THR A 287 SITE 3 AC2 24 LEU A 320 VAL A 326 PHE A 329 ARG A 331 SITE 4 AC2 24 ALA A 381 PHE A 382 GLY A 383 TYR A 384 SITE 5 AC2 24 HIS A 387 CYS A 389 ILE A 390 GLY A 391 SITE 6 AC2 24 ALA A 395 C4O A 501 HOH A 834 HOH A 859 SITE 1 AC3 5 LYS A 420 ARG A 431 LYS A 432 HOH A 648 SITE 2 AC3 5 HOH A 660 SITE 1 AC4 11 ASP A 282 ALA A 285 SER A 286 ILE A 422 SITE 2 AC4 11 GLY A 428 GLY A 429 LEU A 430 ARG A 431 SITE 3 AC4 11 HOH A 709 HOH A 742 HOH A 999 CRYST1 111.079 111.079 80.493 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009003 0.005198 0.000000 0.00000 SCALE2 0.000000 0.010395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012423 0.00000