HEADER TRANSCRIPTION 12-AUG-21 7V4E TITLE CRYSTAL STRUCTURE OF VPSR DISPLAY NOVEL DIMERIC ARCHITECTURE AND C-DI- TITLE 2 GMP BINDING: MECHANISTIC IMPLICATIONS IN OLIGOMERIZATION, ATPASE TITLE 3 ACTIVITY AND DNA BINDING. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VPSR; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: VPSR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS X-RAY CRYSTALLOGRAPHY; BIOFILM; FLUORESCENCE QUENCHING; ATPASE KEYWDS 2 ACTIVITY; SECOND-MESSENGER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.CHAKRABORTTY,U.SEN REVDAT 2 29-NOV-23 7V4E 1 REMARK REVDAT 1 06-APR-22 7V4E 0 JRNL AUTH T.CHAKRABORTTY,S.ROY CHOWDHURY,B.GHOSH,U.SEN JRNL TITL CRYSTAL STRUCTURE OF VPSR REVEALED NOVEL DIMERIC JRNL TITL 2 ARCHITECTURE AND C-DI-GMP BINDING SITE: MECHANISTIC JRNL TITL 3 IMPLICATIONS IN OLIGOMERIZATION, ATPASE ACTIVITY AND DNA JRNL TITL 4 BINDING. JRNL REF J.MOL.BIOL. V. 434 67354 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 34774564 JRNL DOI 10.1016/J.JMB.2021.167354 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.220 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 19802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1620 - 9.6171 0.90 1271 126 0.1897 0.2209 REMARK 3 2 9.6171 - 7.6432 0.86 1232 141 0.2024 0.2117 REMARK 3 3 7.6432 - 6.6800 0.93 1306 129 0.2437 0.2700 REMARK 3 4 6.6800 - 6.0705 0.89 1273 137 0.2786 0.3144 REMARK 3 5 6.0705 - 5.6361 0.87 1219 153 0.2829 0.3616 REMARK 3 6 5.6361 - 5.3042 0.91 1287 143 0.2821 0.2950 REMARK 3 7 5.3042 - 5.0389 0.93 1301 148 0.2776 0.3621 REMARK 3 8 5.0389 - 4.8198 0.94 1287 142 0.2601 0.2906 REMARK 3 9 4.8198 - 4.6344 0.88 1268 154 0.2820 0.3623 REMARK 3 10 4.6344 - 4.4746 0.89 1252 131 0.2601 0.3369 REMARK 3 11 4.4746 - 4.3347 0.88 1246 147 0.2896 0.3059 REMARK 3 12 4.3347 - 4.2109 0.91 1300 136 0.3073 0.3449 REMARK 3 13 4.2109 - 4.1001 0.93 1300 155 0.3263 0.3885 REMARK 3 14 4.1001 - 4.0001 0.93 1268 150 0.3410 0.3720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6092 REMARK 3 ANGLE : 0.953 8270 REMARK 3 CHIRALITY : 0.033 942 REMARK 3 PLANARITY : 0.004 1050 REMARK 3 DIHEDRAL : 17.202 2244 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8-8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.974 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BENT CYLINDRICAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19802 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.162 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NY5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M AMS, BICINE PH 8.8, NACL 300MM, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.04700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.09400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 PHE A 5 REMARK 465 ARG A 6 REMARK 465 MET A 7 REMARK 465 ASP A 8 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 SER D -10 REMARK 465 SER D -9 REMARK 465 GLY D -8 REMARK 465 LEU D -7 REMARK 465 VAL D -6 REMARK 465 PRO D -5 REMARK 465 ARG D -4 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 3 REMARK 465 GLN D 4 REMARK 465 PHE D 5 REMARK 465 ARG D 6 REMARK 465 MET D 7 REMARK 465 ASP D 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 284 NE2 GLN D 159 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 3.44 -66.49 REMARK 500 ARG A 34 -171.05 59.78 REMARK 500 ALA A 39 -73.92 -95.48 REMARK 500 HIS A 62 -71.08 56.26 REMARK 500 GLU A 64 -31.69 82.46 REMARK 500 SER A 66 -174.81 55.12 REMARK 500 LEU A 67 -29.89 -158.09 REMARK 500 SER A 76 67.94 -61.71 REMARK 500 GLN A 79 -74.06 -71.27 REMARK 500 TRP A 82 121.28 -170.23 REMARK 500 GLN A 90 -42.59 56.21 REMARK 500 LEU A 91 75.64 -29.60 REMARK 500 THR A 95 -96.41 -65.62 REMARK 500 ILE A 96 48.52 -82.61 REMARK 500 ASN A 102 49.34 -104.31 REMARK 500 PHE A 103 39.15 35.32 REMARK 500 ILE A 105 -35.38 -37.99 REMARK 500 PHE A 107 -157.88 -75.97 REMARK 500 THR A 109 -165.90 -73.18 REMARK 500 ASP A 114 52.97 -61.06 REMARK 500 ALA A 115 -31.42 -178.58 REMARK 500 TRP A 135 80.20 -158.77 REMARK 500 PRO A 136 32.37 -95.51 REMARK 500 HIS A 137 3.06 -158.12 REMARK 500 SER A 140 -71.15 -108.74 REMARK 500 ALA A 141 -92.47 -70.64 REMARK 500 MET A 144 -4.47 68.87 REMARK 500 LEU A 146 -16.44 72.42 REMARK 500 ILE A 147 -86.14 -138.81 REMARK 500 SER A 150 -153.08 -116.66 REMARK 500 THR A 166 106.93 -58.42 REMARK 500 ASP A 167 43.37 -67.68 REMARK 500 SER A 192 -3.53 60.90 REMARK 500 PRO A 197 152.14 -40.91 REMARK 500 CYS A 203 4.88 -65.44 REMARK 500 SER A 207 73.31 48.14 REMARK 500 GLU A 208 -60.61 31.24 REMARK 500 LEU A 215 -82.35 -103.78 REMARK 500 LEU A 218 -151.49 -71.12 REMARK 500 THR A 221 64.67 -154.21 REMARK 500 GLU A 222 -89.53 -8.65 REMARK 500 GLU A 223 -84.60 -130.69 REMARK 500 GLN A 225 -43.87 61.64 REMARK 500 GLN A 226 96.82 33.82 REMARK 500 ALA A 232 40.99 -81.14 REMARK 500 ASP A 233 -82.07 -55.78 REMARK 500 GLU A 259 -36.46 -137.42 REMARK 500 GLN A 266 34.27 -98.97 REMARK 500 ASN A 301 42.93 -78.94 REMARK 500 ALA A 314 -97.60 -70.52 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 7V4E A 1 382 UNP Q9AQ41 Q9AQ41_VIBCL 1 382 DBREF 7V4E D 1 382 UNP Q9AQ41 Q9AQ41_VIBCL 1 382 SEQADV 7V4E HIS A -16 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS A -15 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS A -14 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS A -13 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS A -12 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS A -11 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E SER A -10 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E SER A -9 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E GLY A -8 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E LEU A -7 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E VAL A -6 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E PRO A -5 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E ARG A -4 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E GLY A -3 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E SER A -2 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS A -1 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E MET A 0 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS D -16 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS D -15 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS D -14 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS D -13 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS D -12 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS D -11 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E SER D -10 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E SER D -9 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E GLY D -8 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E LEU D -7 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E VAL D -6 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E PRO D -5 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E ARG D -4 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E GLY D -3 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E SER D -2 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E HIS D -1 UNP Q9AQ41 EXPRESSION TAG SEQADV 7V4E MET D 0 UNP Q9AQ41 EXPRESSION TAG SEQRES 1 A 399 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 399 GLY SER HIS MET MET SER THR GLN PHE ARG MET ASP SER SEQRES 3 A 399 VAL PRO GLY SER LEU VAL VAL VAL GLY GLY THR TYR GLU SEQRES 4 A 399 PRO TRP LEU PRO VAL LEU GLU LYS VAL GLY TRP ARG CYS SEQRES 5 A 399 THR GLN VAL ALA ASP LEU ARG LYS PRO ASP ALA LEU PHE SEQRES 6 A 399 VAL GLU THR GLY PRO CYS ILE GLY ILE VAL ASP LEU SER SEQRES 7 A 399 HIS ASP GLU PHE SER LEU ASN GLY ILE ALA ASN LEU VAL SEQRES 8 A 399 SER SER HIS LYS GLN VAL ARG TRP LEU ALA PHE ILE ARG SEQRES 9 A 399 GLU ALA GLN LEU SER SER ASP THR ILE CYS GLN PHE ILE SEQRES 10 A 399 VAL ASN PHE CYS ILE ASP PHE PHE THR ALA PRO ILE PRO SEQRES 11 A 399 ASP ALA GLN LEU LEU SER THR ILE GLY HIS GLN LEU GLY SEQRES 12 A 399 MET LEU LYS LEU GLU LYS LYS VAL TRP PRO HIS PHE GLY SEQRES 13 A 399 SER ALA GLY ASN MET GLY LEU ILE GLY GLU SER MET PRO SEQRES 14 A 399 MET LYS ARG LEU ARG ASP GLN ILE LYS ARG ILE GLY PRO SEQRES 15 A 399 THR ASP VAL SER ILE LEU ILE TYR GLY GLU SER GLY THR SEQRES 16 A 399 GLY LYS GLU THR VAL ALA LYS ALA ILE HIS LYS THR SER SEQRES 17 A 399 SER ARG ALA GLN LYS PRO PHE ILE SER VAL ASN CYS ARG SEQRES 18 A 399 ALA MET SER GLU LYS ARG LEU GLU SER GLU LEU PHE GLY SEQRES 19 A 399 LEU GLY GLU THR GLU GLU GLY GLN GLN PRO PHE LEU LEU SEQRES 20 A 399 GLN ALA ASP GLY GLY THR LEU LEU LEU ASN ASP ILE LEU SEQRES 21 A 399 THR LEU PRO LYS SER GLN GLN LEU ASN LEU LEU ARG PHE SEQRES 22 A 399 LEU GLN GLU GLY THR VAL GLU THR ARG GLN GLY VAL ARG SEQRES 23 A 399 ALA VAL ASP VAL ARG ILE LEU ALA ALA ASN SER SER ASP SEQRES 24 A 399 ILE GLU LYS ALA LEU ILE ASP GLY ASP PHE ASN GLU GLU SEQRES 25 A 399 LEU TYR HIS TYR ILE ASN VAL LEU ARG ILE ASN VAL PRO SEQRES 26 A 399 SER LEU LYS GLU ARG ALA SER ASP ILE VAL LEU LEU ALA SEQRES 27 A 399 LYS HIS PHE LEU GLN GLU TYR SER LYS GLU TYR ASN ALA SEQRES 28 A 399 GLN ALA ARG SER PHE SER ASP ASP ALA VAL ARG GLY LEU SEQRES 29 A 399 THR ARG TYR HIS TRP PRO GLY ASN VAL ARG GLU LEU MET SEQRES 30 A 399 ASN GLN ILE LYS ARG VAL VAL LEU MET SER ASP THR VAL SEQRES 31 A 399 VAL LEU ASP GLU SER GLN LEU ASP LEU SEQRES 1 D 399 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 D 399 GLY SER HIS MET MET SER THR GLN PHE ARG MET ASP SER SEQRES 3 D 399 VAL PRO GLY SER LEU VAL VAL VAL GLY GLY THR TYR GLU SEQRES 4 D 399 PRO TRP LEU PRO VAL LEU GLU LYS VAL GLY TRP ARG CYS SEQRES 5 D 399 THR GLN VAL ALA ASP LEU ARG LYS PRO ASP ALA LEU PHE SEQRES 6 D 399 VAL GLU THR GLY PRO CYS ILE GLY ILE VAL ASP LEU SER SEQRES 7 D 399 HIS ASP GLU PHE SER LEU ASN GLY ILE ALA ASN LEU VAL SEQRES 8 D 399 SER SER HIS LYS GLN VAL ARG TRP LEU ALA PHE ILE ARG SEQRES 9 D 399 GLU ALA GLN LEU SER SER ASP THR ILE CYS GLN PHE ILE SEQRES 10 D 399 VAL ASN PHE CYS ILE ASP PHE PHE THR ALA PRO ILE PRO SEQRES 11 D 399 ASP ALA GLN LEU LEU SER THR ILE GLY HIS GLN LEU GLY SEQRES 12 D 399 MET LEU LYS LEU GLU LYS LYS VAL TRP PRO HIS PHE GLY SEQRES 13 D 399 SER ALA GLY ASN MET GLY LEU ILE GLY GLU SER MET PRO SEQRES 14 D 399 MET LYS ARG LEU ARG ASP GLN ILE LYS ARG ILE GLY PRO SEQRES 15 D 399 THR ASP VAL SER ILE LEU ILE TYR GLY GLU SER GLY THR SEQRES 16 D 399 GLY LYS GLU THR VAL ALA LYS ALA ILE HIS LYS THR SER SEQRES 17 D 399 SER ARG ALA GLN LYS PRO PHE ILE SER VAL ASN CYS ARG SEQRES 18 D 399 ALA MET SER GLU LYS ARG LEU GLU SER GLU LEU PHE GLY SEQRES 19 D 399 LEU GLY GLU THR GLU GLU GLY GLN GLN PRO PHE LEU LEU SEQRES 20 D 399 GLN ALA ASP GLY GLY THR LEU LEU LEU ASN ASP ILE LEU SEQRES 21 D 399 THR LEU PRO LYS SER GLN GLN LEU ASN LEU LEU ARG PHE SEQRES 22 D 399 LEU GLN GLU GLY THR VAL GLU THR ARG GLN GLY VAL ARG SEQRES 23 D 399 ALA VAL ASP VAL ARG ILE LEU ALA ALA ASN SER SER ASP SEQRES 24 D 399 ILE GLU LYS ALA LEU ILE ASP GLY ASP PHE ASN GLU GLU SEQRES 25 D 399 LEU TYR HIS TYR ILE ASN VAL LEU ARG ILE ASN VAL PRO SEQRES 26 D 399 SER LEU LYS GLU ARG ALA SER ASP ILE VAL LEU LEU ALA SEQRES 27 D 399 LYS HIS PHE LEU GLN GLU TYR SER LYS GLU TYR ASN ALA SEQRES 28 D 399 GLN ALA ARG SER PHE SER ASP ASP ALA VAL ARG GLY LEU SEQRES 29 D 399 THR ARG TYR HIS TRP PRO GLY ASN VAL ARG GLU LEU MET SEQRES 30 D 399 ASN GLN ILE LYS ARG VAL VAL LEU MET SER ASP THR VAL SEQRES 31 D 399 VAL LEU ASP GLU SER GLN LEU ASP LEU HET SO4 A 501 5 HET SO4 D 501 5 HET C2E D 502 46 HET C2E D 503 46 HETNAM SO4 SULFATE ION HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 C2E 2(C20 H24 N10 O14 P2) HELIX 1 AA1 TRP A 24 LYS A 30 1 7 HELIX 2 AA2 LYS A 43 GLY A 52 1 10 HELIX 3 AA3 LEU A 67 SER A 76 1 10 HELIX 4 AA4 THR A 95 PHE A 103 5 9 HELIX 5 AA5 GLN A 116 VAL A 134 1 19 HELIX 6 AA6 GLY A 142 LEU A 146 5 5 HELIX 7 AA7 SER A 150 ARG A 162 1 13 HELIX 8 AA8 GLY A 179 LYS A 189 1 11 HELIX 9 AA9 ARG A 204 MET A 206 5 3 HELIX 10 AB1 GLU A 208 GLU A 214 1 7 HELIX 11 AB2 PRO A 227 ALA A 232 1 6 HELIX 12 AB3 ILE A 242 LEU A 245 5 4 HELIX 13 AB4 PRO A 246 GLU A 259 1 14 HELIX 14 AB5 ASP A 282 ASP A 289 1 8 HELIX 15 AB6 ASN A 293 ASN A 301 1 9 HELIX 16 AB7 ASP A 316 ASN A 333 1 18 HELIX 17 AB8 SER A 340 ARG A 349 1 10 HELIX 18 AB9 ASN A 355 LEU A 368 1 14 HELIX 19 AC1 GLU A 377 ASP A 381 5 5 HELIX 20 AC2 LEU D 25 GLU D 29 5 5 HELIX 21 AC3 ARG D 42 THR D 51 1 10 HELIX 22 AC4 SER D 66 SER D 76 1 11 HELIX 23 AC5 PRO D 113 GLY D 122 1 10 HELIX 24 AC6 GLN D 124 LYS D 132 1 9 HELIX 25 AC7 SER D 150 GLY D 164 1 15 HELIX 26 AC8 GLY D 179 THR D 190 1 12 HELIX 27 AC9 GLU D 208 PHE D 216 1 9 HELIX 28 AD1 PRO D 227 ALA D 232 1 6 HELIX 29 AD2 ILE D 242 LEU D 245 5 4 HELIX 30 AD3 PRO D 246 GLU D 259 1 14 HELIX 31 AD4 ASP D 282 ILE D 288 1 7 HELIX 32 AD5 ASN D 293 ASN D 301 1 9 HELIX 33 AD6 ASP D 316 ASN D 333 1 18 HELIX 34 AD7 SER D 340 THR D 348 1 9 HELIX 35 AD8 GLY D 354 LEU D 368 1 15 HELIX 36 AD9 ASP D 376 ASP D 381 5 6 SHEET 1 AA1 2 ILE A 55 ASP A 59 0 SHEET 2 AA1 2 LEU A 83 ARG A 87 1 O PHE A 85 N VAL A 58 SHEET 1 AA2 5 PHE A 198 ASN A 202 0 SHEET 2 AA2 5 THR A 236 ASN A 240 1 O LEU A 238 N ILE A 199 SHEET 3 AA2 5 ARG A 274 ASN A 279 1 O LEU A 276 N LEU A 237 SHEET 4 AA2 5 LEU A 171 GLY A 174 1 N ILE A 172 O ASN A 279 SHEET 5 AA2 5 ARG A 304 VAL A 307 1 O ILE A 305 N LEU A 171 SHEET 1 AA3 2 THR A 261 THR A 264 0 SHEET 2 AA3 2 GLY A 267 ALA A 270 -1 O ARG A 269 N VAL A 262 SHEET 1 AA4 2 SER A 338 PHE A 339 0 SHEET 2 AA4 2 VAL A 374 LEU A 375 1 O LEU A 375 N SER A 338 SHEET 1 AA5 4 GLN D 37 VAL D 38 0 SHEET 2 AA5 4 SER D 13 VAL D 15 1 N LEU D 14 O VAL D 38 SHEET 3 AA5 4 CYS D 54 LEU D 60 1 O ILE D 57 N SER D 13 SHEET 4 AA5 4 TRP D 82 LEU D 83 1 O LEU D 83 N CYS D 54 SHEET 1 AA6 4 GLN D 37 VAL D 38 0 SHEET 2 AA6 4 SER D 13 VAL D 15 1 N LEU D 14 O VAL D 38 SHEET 3 AA6 4 CYS D 54 LEU D 60 1 O ILE D 57 N SER D 13 SHEET 4 AA6 4 ILE D 86 GLU D 88 1 O ARG D 87 N LEU D 60 SHEET 1 AA7 5 PHE D 198 VAL D 201 0 SHEET 2 AA7 5 THR D 236 ASN D 240 1 O THR D 236 N ILE D 199 SHEET 3 AA7 5 ARG D 274 ASN D 279 1 O LEU D 276 N LEU D 237 SHEET 4 AA7 5 ILE D 170 TYR D 173 1 N ILE D 172 O ALA D 277 SHEET 5 AA7 5 LEU D 303 ASN D 306 1 O LEU D 303 N LEU D 171 SHEET 1 AA8 2 THR D 261 VAL D 262 0 SHEET 2 AA8 2 ARG D 269 ALA D 270 -1 O ARG D 269 N VAL D 262 SHEET 1 AA9 2 SER D 338 PHE D 339 0 SHEET 2 AA9 2 VAL D 374 LEU D 375 1 O LEU D 375 N SER D 338 CRYST1 119.687 119.687 81.141 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008355 0.004824 0.000000 0.00000 SCALE2 0.000000 0.009648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012324 0.00000