HEADER OXYGEN BINDING 17-AUG-21 7V5P TITLE THE DIMERIC STRUCTURE OF G80A/H81A MYOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOGLOBIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; SOURCE 3 ORGANISM_COMMON: HORSE; SOURCE 4 ORGANISM_TAXID: 9796; SOURCE 5 GENE: MB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXYGEN STORAGE, OXYGEN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.XIE,S.NAGAO,N.SHIBATA,Y.HIGUCHI,S.HIROTA REVDAT 2 29-NOV-23 7V5P 1 REMARK REVDAT 1 29-JUN-22 7V5P 0 JRNL AUTH C.XIE,H.SHIMOYAMA,M.YAMANAKA,S.NAGAO,H.KOMORI,N.SHIBATA, JRNL AUTH 2 Y.HIGUCHI,Y.SHIGETA,S.HIROTA JRNL TITL EXPERIMENTAL AND THEORETICAL STUDY ON CONVERTING MYOGLOBIN JRNL TITL 2 INTO A STABLE DOMAIN-SWAPPED DIMER BY UTILIZING A TIGHT JRNL TITL 3 HYDROGEN BOND NETWORK AT THE HINGE REGION. JRNL REF RSC ADV V. 11 37604 2021 JRNL REFN ESSN 2046-2069 JRNL PMID 35496441 JRNL DOI 10.1039/D1RA06888A REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 96318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5098 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 379 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.66000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.923 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2542 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2436 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3446 ; 1.369 ; 1.696 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5634 ; 1.482 ; 1.621 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 4.836 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.905 ;24.630 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;11.406 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 7.678 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2854 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 538 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 153 B 1 153 4573 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8693 8.8122 -4.9498 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0569 REMARK 3 T33: 0.0316 T12: 0.0674 REMARK 3 T13: -0.0148 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.3007 L22: 6.5110 REMARK 3 L33: 5.4065 L12: 2.8440 REMARK 3 L13: -1.1581 L23: -3.6279 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0291 S13: 0.0159 REMARK 3 S21: 0.0206 S22: 0.1013 S23: 0.0729 REMARK 3 S31: -0.2387 S32: -0.2534 S33: -0.1019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2433 -0.6710 11.0598 REMARK 3 T TENSOR REMARK 3 T11: 0.0409 T22: 0.0314 REMARK 3 T33: 0.0449 T12: 0.0027 REMARK 3 T13: 0.0264 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 3.0601 L22: 0.7245 REMARK 3 L33: 1.6955 L12: -0.2053 REMARK 3 L13: 0.8817 L23: -0.1619 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.1207 S13: -0.0247 REMARK 3 S21: -0.0679 S22: -0.0078 S23: 0.0379 REMARK 3 S31: 0.1527 S32: -0.1194 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5521 2.4811 23.0133 REMARK 3 T TENSOR REMARK 3 T11: 0.0348 T22: 0.0623 REMARK 3 T33: 0.0312 T12: 0.0122 REMARK 3 T13: 0.0101 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.3369 L22: 5.9844 REMARK 3 L33: 5.4643 L12: 2.8365 REMARK 3 L13: -1.8778 L23: -3.8400 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.2224 S13: -0.0627 REMARK 3 S21: 0.1747 S22: -0.1754 S23: -0.1782 REMARK 3 S31: -0.0785 S32: 0.3261 S33: 0.1677 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6494 7.6890 9.3488 REMARK 3 T TENSOR REMARK 3 T11: 0.0224 T22: 0.0503 REMARK 3 T33: 0.0554 T12: 0.0006 REMARK 3 T13: 0.0139 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3956 L22: 4.0146 REMARK 3 L33: 2.9160 L12: -0.3357 REMARK 3 L13: 0.2076 L23: -2.8380 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.0243 S13: -0.0200 REMARK 3 S21: -0.0137 S22: -0.0017 S23: -0.0238 REMARK 3 S31: 0.1014 S32: -0.0490 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1464 36.4857 -12.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0534 REMARK 3 T33: 0.0174 T12: -0.0088 REMARK 3 T13: 0.0265 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.6727 L22: 2.2365 REMARK 3 L33: 3.2196 L12: 0.2483 REMARK 3 L13: -0.4082 L23: 0.4141 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: 0.0034 S13: 0.0018 REMARK 3 S21: -0.2271 S22: 0.0002 S23: -0.0902 REMARK 3 S31: 0.1925 S32: 0.1998 S33: 0.0481 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6825 46.9119 2.7961 REMARK 3 T TENSOR REMARK 3 T11: 0.0453 T22: 0.0841 REMARK 3 T33: 0.0170 T12: 0.0115 REMARK 3 T13: 0.0042 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 6.0056 L22: 3.7306 REMARK 3 L33: 5.6179 L12: -2.5608 REMARK 3 L13: -3.1262 L23: 2.4498 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: -0.4466 S13: 0.1146 REMARK 3 S21: 0.1327 S22: 0.1891 S23: 0.1060 REMARK 3 S31: -0.1530 S32: -0.0946 S33: -0.0619 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1770 36.5998 2.7636 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.0626 REMARK 3 T33: 0.0287 T12: -0.0199 REMARK 3 T13: -0.0059 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.7208 L22: 2.9392 REMARK 3 L33: 4.6307 L12: -1.1425 REMARK 3 L13: -2.0422 L23: 1.7682 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.0589 S13: 0.0323 REMARK 3 S21: -0.0191 S22: -0.0073 S23: -0.0820 REMARK 3 S31: -0.0559 S32: 0.0950 S33: -0.0099 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6974 29.8798 -12.2882 REMARK 3 T TENSOR REMARK 3 T11: 0.3063 T22: 0.0924 REMARK 3 T33: 0.1095 T12: 0.0980 REMARK 3 T13: 0.0076 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 8.6845 L22: 14.1523 REMARK 3 L33: 0.5463 L12: -0.4162 REMARK 3 L13: -0.3241 L23: -2.7143 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.0112 S13: -0.3710 REMARK 3 S21: 0.3699 S22: -0.2066 S23: -1.0988 REMARK 3 S31: -0.0250 S32: 0.0561 S33: 0.2349 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 15 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6937 34.2415 8.9514 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0701 REMARK 3 T33: 0.0100 T12: -0.0342 REMARK 3 T13: 0.0135 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.9007 L22: 2.9062 REMARK 3 L33: 1.9752 L12: -1.3107 REMARK 3 L13: 1.7320 L23: -1.1695 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.0609 S13: 0.0091 REMARK 3 S21: 0.0052 S22: -0.0491 S23: -0.0579 REMARK 3 S31: 0.1056 S32: -0.0227 S33: 0.0129 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8056 46.7576 -6.4527 REMARK 3 T TENSOR REMARK 3 T11: 0.0412 T22: 0.0253 REMARK 3 T33: 0.0292 T12: -0.0244 REMARK 3 T13: -0.0185 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.8153 L22: 2.5362 REMARK 3 L33: 1.4898 L12: 1.4055 REMARK 3 L13: -0.9440 L23: -0.2489 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0400 S13: 0.1807 REMARK 3 S21: -0.1708 S22: 0.0445 S23: 0.1268 REMARK 3 S31: -0.0535 S32: -0.0119 S33: -0.0394 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7764 48.2224 -19.8778 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.0136 REMARK 3 T33: 0.0234 T12: -0.0223 REMARK 3 T13: 0.0193 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.0935 L22: 7.4570 REMARK 3 L33: 5.2919 L12: -4.5475 REMARK 3 L13: 1.2130 L23: -0.5663 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: 0.0757 S13: 0.0405 REMARK 3 S21: -0.1380 S22: -0.0434 S23: 0.0377 REMARK 3 S31: -0.4340 S32: 0.0678 S33: -0.0041 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 63 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6137 50.5453 -14.4713 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.0472 REMARK 3 T33: 0.0451 T12: 0.0099 REMARK 3 T13: -0.0323 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 3.9852 L22: 10.9815 REMARK 3 L33: 3.6541 L12: 1.4739 REMARK 3 L13: -0.3036 L23: -2.9689 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: 0.0158 S13: -0.0013 REMARK 3 S21: -0.2012 S22: -0.0039 S23: 0.4226 REMARK 3 S31: -0.1740 S32: -0.2326 S33: -0.1128 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 64 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5121 30.3363 -0.9332 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.0389 REMARK 3 T33: 0.0379 T12: 0.0098 REMARK 3 T13: 0.0012 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.8058 L22: 3.0034 REMARK 3 L33: 2.5711 L12: -1.0974 REMARK 3 L13: 1.2405 L23: -2.0339 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.0214 S13: -0.0414 REMARK 3 S21: 0.0002 S22: 0.0452 S23: 0.0281 REMARK 3 S31: 0.0244 S32: 0.0919 S33: 0.0031 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0977 17.5433 17.1562 REMARK 3 T TENSOR REMARK 3 T11: 0.0717 T22: 0.0269 REMARK 3 T33: 0.0387 T12: 0.0139 REMARK 3 T13: -0.0310 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 4.3094 L22: 4.9474 REMARK 3 L33: 4.6846 L12: -3.0240 REMARK 3 L13: 1.1314 L23: -1.7008 REMARK 3 S TENSOR REMARK 3 S11: -0.2559 S12: -0.1803 S13: 0.1792 REMARK 3 S21: 0.5159 S22: 0.1540 S23: -0.2144 REMARK 3 S31: -0.3358 S32: -0.1407 S33: 0.1019 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 100 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7600 3.6594 0.4591 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.0366 REMARK 3 T33: 0.0518 T12: 0.0149 REMARK 3 T13: 0.0178 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.0251 L22: 1.7791 REMARK 3 L33: 1.4013 L12: 0.2379 REMARK 3 L13: 0.6718 L23: 0.3842 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.0682 S13: -0.1005 REMARK 3 S21: -0.2646 S22: -0.0262 S23: -0.0973 REMARK 3 S31: -0.0250 S32: 0.0035 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0062 19.1381 7.4266 REMARK 3 T TENSOR REMARK 3 T11: 0.0280 T22: 0.0193 REMARK 3 T33: 0.0708 T12: -0.0015 REMARK 3 T13: 0.0094 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.8899 L22: 4.0378 REMARK 3 L33: 2.7734 L12: 1.0846 REMARK 3 L13: 1.1814 L23: 0.5771 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0709 S13: 0.0856 REMARK 3 S21: -0.0319 S22: -0.1109 S23: -0.3467 REMARK 3 S31: -0.2032 S32: 0.0445 S33: 0.1106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7V5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 47.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 0.1 M TRIS-HCL, REMARK 280 10% (W/V) PEG 6,000, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.76350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.67750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.36750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.67750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.76350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.36750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 20 71.89 -153.06 REMARK 500 LYS A 96 -61.87 -102.62 REMARK 500 PHE B 123 47.39 -147.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 HEM A 201 NA 90.2 REMARK 620 3 HEM A 201 NB 89.3 89.5 REMARK 620 4 HEM A 201 NC 93.9 175.4 88.4 REMARK 620 5 HEM A 201 ND 94.9 91.0 175.8 90.7 REMARK 620 6 O B 201 O 176.8 93.0 90.4 82.9 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 O A 202 O REMARK 620 2 HEM B 202 NA 92.4 REMARK 620 3 HEM B 202 NB 89.1 89.1 REMARK 620 4 HEM B 202 NC 83.2 175.2 89.1 REMARK 620 5 HEM B 202 ND 86.3 89.8 175.2 91.6 REMARK 620 6 HIS B 93 NE2 176.9 90.6 90.0 93.8 94.7 REMARK 620 N 1 2 3 4 5 DBREF 7V5P A 1 153 UNP P68082 MYG_HORSE 2 154 DBREF 7V5P B 1 153 UNP P68082 MYG_HORSE 2 154 SEQADV 7V5P ALA A 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQADV 7V5P ALA A 81 UNP P68082 HIS 82 ENGINEERED MUTATION SEQADV 7V5P ALA B 80 UNP P68082 GLY 81 ENGINEERED MUTATION SEQADV 7V5P ALA B 81 UNP P68082 HIS 82 ENGINEERED MUTATION SEQRES 1 A 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 A 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 A 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 A 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 A 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 A 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 A 153 LYS ALA ALA HIS GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 A 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 A 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 A 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 A 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 A 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY SEQRES 1 B 153 GLY LEU SER ASP GLY GLU TRP GLN GLN VAL LEU ASN VAL SEQRES 2 B 153 TRP GLY LYS VAL GLU ALA ASP ILE ALA GLY HIS GLY GLN SEQRES 3 B 153 GLU VAL LEU ILE ARG LEU PHE THR GLY HIS PRO GLU THR SEQRES 4 B 153 LEU GLU LYS PHE ASP LYS PHE LYS HIS LEU LYS THR GLU SEQRES 5 B 153 ALA GLU MET LYS ALA SER GLU ASP LEU LYS LYS HIS GLY SEQRES 6 B 153 THR VAL VAL LEU THR ALA LEU GLY GLY ILE LEU LYS LYS SEQRES 7 B 153 LYS ALA ALA HIS GLU ALA GLU LEU LYS PRO LEU ALA GLN SEQRES 8 B 153 SER HIS ALA THR LYS HIS LYS ILE PRO ILE LYS TYR LEU SEQRES 9 B 153 GLU PHE ILE SER ASP ALA ILE ILE HIS VAL LEU HIS SER SEQRES 10 B 153 LYS HIS PRO GLY ASP PHE GLY ALA ASP ALA GLN GLY ALA SEQRES 11 B 153 MET THR LYS ALA LEU GLU LEU PHE ARG ASN ASP ILE ALA SEQRES 12 B 153 ALA LYS TYR LYS GLU LEU GLY PHE GLN GLY HET HEM A 201 43 HET O A 202 1 HET O B 201 1 HET HEM B 202 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM O OXYGEN ATOM HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 O 2(O) FORMUL 7 HOH *316(H2 O) HELIX 1 AA1 SER A 3 ALA A 19 1 17 HELIX 2 AA2 ASP A 20 HIS A 36 1 17 HELIX 3 AA3 HIS A 36 GLU A 41 1 6 HELIX 4 AA4 LYS A 42 LYS A 47 5 6 HELIX 5 AA5 THR A 51 SER A 58 1 8 HELIX 6 AA6 SER A 58 LYS A 96 1 39 HELIX 7 AA7 PRO A 100 HIS A 119 1 20 HELIX 8 AA8 GLY A 124 LEU A 149 1 26 HELIX 9 AA9 SER B 3 ASP B 20 1 18 HELIX 10 AB1 ASP B 20 HIS B 36 1 17 HELIX 11 AB2 PRO B 37 PHE B 43 5 7 HELIX 12 AB3 THR B 51 SER B 58 1 8 HELIX 13 AB4 SER B 58 LYS B 96 1 39 HELIX 14 AB5 PRO B 100 HIS B 119 1 20 HELIX 15 AB6 PRO B 120 PHE B 123 5 4 HELIX 16 AB7 GLY B 124 GLY B 150 1 27 LINK NE2 HIS A 93 FE HEM A 201 1555 1555 2.14 LINK FE HEM A 201 O O B 201 1555 1555 2.18 LINK O O A 202 FE HEM B 202 1555 1555 2.12 LINK NE2 HIS B 93 FE HEM B 202 1555 1555 2.11 CRYST1 57.527 62.735 83.355 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011997 0.00000