HEADER IMMUNE SYSTEM 19-AUG-21 7V64 TITLE CRYSTAL STRUCTURE OF ANTIBODY 16A IN COMPLEX WITH MUC1 TITLE 2 GLYCOPEPTIDE(GLYCOT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 16A FAB LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 16A FAB HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MUCIN-1 SUBUNIT ALPHA; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: MUC1-NT,MUC1-ALPHA; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPALPUS NIGRIBASIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 2611032; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: TRICHOPALPUS NIGRIBASIS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 2611032; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY, ANTI-MUC1, CANCER, GLYCOPEPTIDE, ANTITUMOR PROTEIN, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.NIU,L.XU,B.MENG,Y.B.HAN,B.YANG REVDAT 2 29-NOV-23 7V64 1 REMARK REVDAT 1 24-AUG-22 7V64 0 JRNL AUTH Y.B.HAN,L.XU JRNL TITL SITE-SPECIFIC GALNAC MODIFICATION ON A MUC1 NEOANTIGEN JRNL TITL 2 EPITOPE FORMS A BASIS FOR HIGH-AFFINITY ANTIBODY BINDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 62756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6100 - 4.4300 1.00 2870 142 0.1851 0.1696 REMARK 3 2 4.4300 - 3.5200 1.00 2743 149 0.1584 0.1670 REMARK 3 3 3.5200 - 3.0700 1.00 2676 159 0.1617 0.1963 REMARK 3 4 3.0700 - 2.7900 1.00 2679 135 0.1784 0.2231 REMARK 3 5 2.7900 - 2.5900 1.00 2668 142 0.1805 0.1916 REMARK 3 6 2.5900 - 2.4400 1.00 2665 128 0.1785 0.2290 REMARK 3 7 2.4400 - 2.3200 1.00 2607 151 0.1796 0.1961 REMARK 3 8 2.3200 - 2.2200 1.00 2687 124 0.1726 0.1866 REMARK 3 9 2.2200 - 2.1300 0.99 2644 137 0.1686 0.1714 REMARK 3 10 2.1300 - 2.0600 1.00 2599 145 0.1692 0.1693 REMARK 3 11 2.0600 - 1.9900 1.00 2584 162 0.1670 0.2060 REMARK 3 12 1.9900 - 1.9400 1.00 2602 157 0.1781 0.2166 REMARK 3 13 1.9400 - 1.8900 0.99 2583 135 0.1824 0.1924 REMARK 3 14 1.8900 - 1.8400 0.99 2624 143 0.1874 0.2239 REMARK 3 15 1.8400 - 1.8000 0.98 2549 121 0.1905 0.2350 REMARK 3 16 1.8000 - 1.7600 0.98 2611 133 0.1945 0.2760 REMARK 3 17 1.7600 - 1.7200 0.98 2544 136 0.1990 0.2757 REMARK 3 18 1.7200 - 1.6900 0.98 2561 134 0.2077 0.2788 REMARK 3 19 1.6900 - 1.6600 0.97 2521 141 0.2112 0.2754 REMARK 3 20 1.6600 - 1.6300 0.97 2542 141 0.2190 0.2554 REMARK 3 21 1.6300 - 1.6100 0.97 2526 142 0.2229 0.2752 REMARK 3 22 1.6100 - 1.5800 0.96 2462 131 0.2353 0.2796 REMARK 3 23 1.5800 - 1.5600 0.76 2004 117 0.2533 0.2988 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V64 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62756 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 40.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LITHIUM CHLORIDE, 0.1 M TRIS PH REMARK 280 8.5, 20% PEG 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.76700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.66550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.61250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.66550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.76700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.61250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 215 REMARK 465 GLU A 216 REMARK 465 CYS A 217 REMARK 465 MET B 0 REMARK 465 SER B 131 REMARK 465 LYS B 132 REMARK 465 SER B 133 REMARK 465 THR B 134 REMARK 465 SER B 135 REMARK 465 SER B 218 REMARK 465 CYS B 219 REMARK 465 ASP B 220 REMARK 465 LYS B 221 REMARK 465 THR B 222 REMARK 465 GLU B 223 REMARK 465 ASN B 224 REMARK 465 LEU B 225 REMARK 465 TYR B 226 REMARK 465 PHE B 227 REMARK 465 GLN B 228 REMARK 465 ARG C 1 REMARK 465 PRO C 2 REMARK 465 ALA C 3 REMARK 465 PRO C 4 REMARK 465 GLY C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 352 O HOH A 522 1.79 REMARK 500 O HOH A 347 O HOH A 486 1.83 REMARK 500 O HOH A 402 O HOH A 405 1.84 REMARK 500 O HOH A 311 O HOH A 527 1.85 REMARK 500 O GLY B 8 O HOH B 301 1.86 REMARK 500 O HOH B 334 O HOH B 399 1.86 REMARK 500 O HOH A 434 O HOH A 451 1.89 REMARK 500 O HOH B 491 O HOH B 498 1.90 REMARK 500 O HOH B 357 O HOH B 446 1.90 REMARK 500 OD2 ASP B 28 O HOH B 302 1.91 REMARK 500 O HOH B 422 O HOH B 443 1.94 REMARK 500 O HOH A 525 O HOH A 535 1.94 REMARK 500 OD1 ASN B 202 O HOH B 303 1.99 REMARK 500 NH2 ARG A 23 O HOH A 301 2.00 REMARK 500 O HOH B 304 O HOH B 346 2.03 REMARK 500 O HOH A 483 O HOH B 500 2.03 REMARK 500 ND2 ASN A 155 O HOH A 302 2.04 REMARK 500 O HOH B 361 O HOH B 493 2.04 REMARK 500 O HOH A 434 O HOH A 556 2.04 REMARK 500 O HOH A 515 O HOH A 517 2.05 REMARK 500 N GLU B 1 O HOH B 304 2.06 REMARK 500 N GLN A 1 O HOH A 303 2.07 REMARK 500 O HOH A 548 O HOH A 562 2.07 REMARK 500 O HOH B 487 O HOH B 507 2.09 REMARK 500 O HOH A 364 O HOH A 544 2.11 REMARK 500 O HOH A 337 O HOH A 548 2.11 REMARK 500 O HOH A 323 O HOH A 529 2.15 REMARK 500 O ALA B 128 O HOH B 305 2.16 REMARK 500 NZ LYS B 65 O HOH B 306 2.16 REMARK 500 O HOH B 361 O HOH B 437 2.16 REMARK 500 O HOH B 476 O HOH B 496 2.16 REMARK 500 O HOH C 211 O HOH C 214 2.17 REMARK 500 O HOH B 387 O HOH B 513 2.17 REMARK 500 O HOH A 518 O HOH A 543 2.18 REMARK 500 OE2 GLU A 190 O HOH A 304 2.19 REMARK 500 O HOH B 503 O HOH B 537 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 530 O HOH B 536 1455 2.01 REMARK 500 O HOH A 529 O HOH B 492 3644 2.01 REMARK 500 NE2 GLN A 1 OD1 ASP B 28 1455 2.07 REMARK 500 O HOH A 316 O HOH B 346 1455 2.09 REMARK 500 O HOH A 343 O HOH B 489 3644 2.09 REMARK 500 O HOH A 410 O HOH B 404 3644 2.09 REMARK 500 O HOH A 529 O HOH B 324 3644 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 96 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 53 -49.68 72.73 REMARK 500 SER A 95 -47.61 72.14 REMARK 500 ASN A 96 16.57 -148.81 REMARK 500 GLU B 101 -44.39 71.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NGA C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7V3Q RELATED DB: PDB REMARK 900 RELATED ID: 7V4W RELATED DB: PDB DBREF 7V64 A 1 217 PDB 7V64 7V64 1 217 DBREF 7V64 B 0 228 PDB 7V64 7V64 0 228 DBREF 7V64 C 1 13 UNP P15941 MUC1_HUMAN 145 157 SEQRES 1 A 217 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 A 217 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 A 217 GLY ALA VAL ILE THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 A 217 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY ARG SEQRES 5 A 217 THR TYR ASN ARG VAL PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 A 217 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE THR SEQRES 7 A 217 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 A 217 LEU TRP TYR SER ASN HIS PHE VAL PHE GLY GLY GLY THR SEQRES 9 A 217 LYS LEU THR VAL LEU LYS ARG THR VAL ALA ALA PRO SER SEQRES 10 A 217 VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER SEQRES 11 A 217 GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR SEQRES 12 A 217 PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA SEQRES 13 A 217 LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN SEQRES 14 A 217 ASP SER LYS ASP SER THR TYR SER LEU SER SER THR LEU SEQRES 15 A 217 THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR SEQRES 16 A 217 ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL SEQRES 17 A 217 THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 229 MET GLU VAL LYS LEU HIS GLN SER GLY GLY GLY LEU VAL SEQRES 2 B 229 GLN PRO GLY GLY PHE LEU LYS ILE SER CYS VAL VAL SER SEQRES 3 B 229 GLY ILE ASP PHE SER ARG TYR TRP MET SER TRP VAL ARG SEQRES 4 B 229 ARG ALA PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE SEQRES 5 B 229 THR PRO ASP SER ASN THR ILE ASN TYR VAL PRO SER LEU SEQRES 6 B 229 LYS ASP ASN PHE GLY ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 B 229 THR LEU PHE LEU GLN MET THR LYS VAL ARG SER GLU ASP SEQRES 8 B 229 THR ALA LEU TYR PHE CYS ALA SER TYR TYR GLU GLY PHE SEQRES 9 B 229 ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA SEQRES 10 B 229 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 B 229 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 B 229 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 B 229 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 B 229 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 B 229 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 B 229 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 B 229 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP SEQRES 18 B 229 LYS THR GLU ASN LEU TYR PHE GLN SEQRES 1 C 13 ARG PRO ALA PRO GLY SER THR ALA PRO PRO ALA HIS GLY HET NGA C 101 28 HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 4 NGA C8 H15 N O6 FORMUL 5 HOH *523(H2 O) HELIX 1 AA1 ILE A 30 TYR A 34 5 5 HELIX 2 AA2 GLN A 81 GLU A 85 5 5 HELIX 3 AA3 SER A 124 SER A 130 1 7 HELIX 4 AA4 LYS A 186 GLU A 190 1 5 HELIX 5 AA5 ASP B 28 TYR B 32 5 5 HELIX 6 AA6 PRO B 62 LYS B 65 5 4 HELIX 7 AA7 ASN B 74 LYS B 76 5 3 HELIX 8 AA8 ARG B 87 THR B 91 5 5 HELIX 9 AA9 SER B 159 ALA B 161 5 3 HELIX 10 AB1 SER B 190 LEU B 192 5 3 HELIX 11 AB2 LYS B 204 ASN B 207 5 4 SHEET 1 AA1 4 VAL A 4 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 24 -1 O ARG A 23 N THR A 5 SHEET 3 AA1 4 LYS A 72 ILE A 77 -1 O LEU A 75 N LEU A 20 SHEET 4 AA1 4 PHE A 64 ILE A 69 -1 N SER A 65 O THR A 76 SHEET 1 AA2 6 ALA A 9 THR A 12 0 SHEET 2 AA2 6 THR A 104 VAL A 108 1 O THR A 107 N LEU A 10 SHEET 3 AA2 6 ALA A 86 TRP A 93 -1 N ALA A 86 O LEU A 106 SHEET 4 AA2 6 ASN A 36 LYS A 41 -1 N GLU A 40 O ILE A 87 SHEET 5 AA2 6 LEU A 45 GLY A 51 -1 O THR A 47 N GLN A 39 SHEET 6 AA2 6 ASN A 55 ARG A 56 -1 O ASN A 55 N GLY A 51 SHEET 1 AA3 4 ALA A 9 THR A 12 0 SHEET 2 AA3 4 THR A 104 VAL A 108 1 O THR A 107 N LEU A 10 SHEET 3 AA3 4 ALA A 86 TRP A 93 -1 N ALA A 86 O LEU A 106 SHEET 4 AA3 4 PHE A 98 PHE A 100 -1 O VAL A 99 N LEU A 92 SHEET 1 AA4 4 SER A 117 PHE A 121 0 SHEET 2 AA4 4 THR A 132 PHE A 142 -1 O LEU A 138 N PHE A 119 SHEET 3 AA4 4 TYR A 176 SER A 185 -1 O LEU A 184 N ALA A 133 SHEET 4 AA4 4 SER A 162 VAL A 166 -1 N GLN A 163 O THR A 181 SHEET 1 AA5 4 ALA A 156 LEU A 157 0 SHEET 2 AA5 4 LYS A 148 VAL A 153 -1 N VAL A 153 O ALA A 156 SHEET 3 AA5 4 VAL A 194 THR A 200 -1 O GLU A 198 N GLN A 150 SHEET 4 AA5 4 VAL A 208 ASN A 213 -1 O VAL A 208 N VAL A 199 SHEET 1 AA6 4 LYS B 3 SER B 7 0 SHEET 2 AA6 4 LEU B 18 SER B 25 -1 O VAL B 23 N HIS B 5 SHEET 3 AA6 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA6 4 PHE B 68 ASP B 73 -1 N GLY B 69 O GLN B 82 SHEET 1 AA7 6 GLY B 10 VAL B 12 0 SHEET 2 AA7 6 THR B 110 VAL B 114 1 O LEU B 111 N GLY B 10 SHEET 3 AA7 6 ALA B 92 TYR B 99 -1 N TYR B 94 O THR B 110 SHEET 4 AA7 6 MET B 34 ARG B 39 -1 N VAL B 37 O PHE B 95 SHEET 5 AA7 6 LEU B 45 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA7 6 ILE B 58 TYR B 60 -1 O ASN B 59 N GLU B 50 SHEET 1 AA8 4 GLY B 10 VAL B 12 0 SHEET 2 AA8 4 THR B 110 VAL B 114 1 O LEU B 111 N GLY B 10 SHEET 3 AA8 4 ALA B 92 TYR B 99 -1 N TYR B 94 O THR B 110 SHEET 4 AA8 4 PHE B 103 TRP B 106 -1 O TYR B 105 N SER B 98 SHEET 1 AA9 4 SER B 123 LEU B 127 0 SHEET 2 AA9 4 THR B 138 TYR B 148 -1 O GLY B 142 N LEU B 127 SHEET 3 AA9 4 TYR B 179 PRO B 188 -1 O LEU B 181 N VAL B 145 SHEET 4 AA9 4 VAL B 166 THR B 168 -1 N HIS B 167 O VAL B 184 SHEET 1 AB1 4 SER B 123 LEU B 127 0 SHEET 2 AB1 4 THR B 138 TYR B 148 -1 O GLY B 142 N LEU B 127 SHEET 3 AB1 4 TYR B 179 PRO B 188 -1 O LEU B 181 N VAL B 145 SHEET 4 AB1 4 VAL B 172 LEU B 173 -1 N VAL B 172 O SER B 180 SHEET 1 AB2 3 THR B 154 TRP B 157 0 SHEET 2 AB2 3 ILE B 198 HIS B 203 -1 O ASN B 200 N SER B 156 SHEET 3 AB2 3 THR B 208 LYS B 213 -1 O THR B 208 N HIS B 203 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.04 SSBOND 2 CYS A 137 CYS A 197 1555 1555 2.06 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.25 SSBOND 4 CYS B 143 CYS B 199 1555 1555 2.06 CISPEP 1 TYR A 143 PRO A 144 0 1.23 CISPEP 2 PHE B 149 PRO B 150 0 -9.76 CISPEP 3 GLU B 151 PRO B 152 0 1.08 CRYST1 39.534 81.225 137.331 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025295 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007282 0.00000