HEADER DNA 20-AUG-21 7V6V TITLE TRIMOLECULAR G-QUADRUPLEXES CONSISTS OF A HAIRPIN MOTIF AND TWO SHORT TITLE 2 CHAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*GP*GP*GP*A)-3'); COMPND 7 CHAIN: B, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS G-QUADRUPLEX, HYBRID STRANDS, TRIMOLECULAR, DNA EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR N.ZHANG,H.T.JING,W.X.HU REVDAT 3 15-MAY-24 7V6V 1 REMARK REVDAT 2 30-AUG-23 7V6V 1 JRNL REVDAT 1 08-FEB-23 7V6V 0 JRNL AUTH W.HU,H.JING,W.FU,Z.WANG,J.ZHOU,N.ZHANG JRNL TITL CONVERSION TO TRIMOLECULAR G-QUADRUPLEX BY SPONTANEOUS JRNL TITL 2 HOOGSTEEN PAIRING-BASED STRAND DISPLACEMENT REACTION BETWEEN JRNL TITL 3 BIMOLECULAR G-QUADRUPLEX AND DOUBLE G-RICH PROBES. JRNL REF J.AM.CHEM.SOC. 2023 JRNL REFN ESSN 1520-5126 JRNL PMID 37553999 JRNL DOI 10.1021/JACS.3C05617 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024190. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 307 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 40 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 4.0 MM DNA (5' REMARK 210 -D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), 4.0 MM DNA (5'-D(*TP*GP* REMARK 210 GP*GP*A)-3'), 10 MM POTASSIUM CHLORIDE, 5 MM POTASSIUM PHOSPHATE, REMARK 210 100 % [U-100% 2H] D2O, 100% D2O; 4.0 MM DNA (5'-D(*CP*AP*GP*GP* REMARK 210 GP*AP*GP*GP*GP*T)-3'), 4.0 MM DNA (5'-D(*TP*GP*GP*GP*A)-3'), 10 REMARK 210 MM POTASSIUM CHLORIDE, 5 MM POTASSIUM PHOSPHATE, 10 % [U-100% 2H] REMARK 210 D2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D 1H-15N HSQC; 2D 1H REMARK 210 -13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36441 RELATED DB: BMRB REMARK 900 TRIMOLECULAR G-QUADRUPLEXES CONSISTS OF A HAIRPIN MOTIF AND TWO REMARK 900 SHORT CHAINS DBREF 7V6V A 1 10 PDB 7V6V 7V6V 1 10 DBREF 7V6V B 11 15 PDB 7V6V 7V6V 11 15 DBREF 7V6V C 16 20 PDB 7V6V 7V6V 16 20 SEQRES 1 A 10 DC DA DG DG DG DA DG DG DG DT SEQRES 1 B 5 DT DG DG DG DA SEQRES 1 C 5 DT DG DG DG DA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1