HEADER LIGASE 22-AUG-21 7V8E TITLE CRYSTAL STRUCTURE OF IPAH1.4 LRR DOMAIN BOUND TO HOIL-1L UBL DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING-TYPE E3 UBIQUITIN TRANSFERASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 2.3.2.27; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RANBP-TYPE AND C3HC4-TYPE ZINC FINGER-CONTAINING PROTEIN 1; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: HEME-OXIDIZED IRP2 UBIQUITIN LIGASE 1,HOIL-1,RING-TYPE E3 COMPND 10 UBIQUITIN TRANSFERASE HOIL-1; COMPND 11 EC: 2.3.2.31; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 5A STR. M90T; SOURCE 3 ORGANISM_TAXID: 1086030; SOURCE 4 STRAIN: M90T; SOURCE 5 GENE: IPAH1.4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS E3 LIAGSE, UBIQUITIN, INNATE IMMUNE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LIU,Y.WANG,L.PAN REVDAT 2 29-NOV-23 7V8E 1 REMARK REVDAT 1 30-MAR-22 7V8E 0 JRNL AUTH J.LIU,Y.WANG,D.WANG,Y.WANG,X.XU,Y.ZHANG,Y.LI,M.ZHANG,X.GONG, JRNL AUTH 2 Y.TANG,L.SHEN,M.LI,L.PAN JRNL TITL MECHANISTIC INSIGHTS INTO THE SUBVERSION OF THE LINEAR JRNL TITL 2 UBIQUITIN CHAIN ASSEMBLY COMPLEX BY THE E3 LIGASE IPAH1.4 OF JRNL TITL 3 SHIGELLA FLEXNERI. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 76119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35294289 JRNL DOI 10.1073/PNAS.2116776119 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.7800 - 4.8700 0.99 2690 145 0.1741 0.1965 REMARK 3 2 4.8700 - 3.8700 1.00 2677 140 0.1479 0.1788 REMARK 3 3 3.8700 - 3.3800 1.00 2701 133 0.1669 0.2068 REMARK 3 4 3.3800 - 3.0800 1.00 2660 160 0.2112 0.2695 REMARK 3 5 3.0800 - 2.8600 1.00 2642 147 0.2234 0.2589 REMARK 3 6 2.8600 - 2.6900 1.00 2681 145 0.2274 0.2842 REMARK 3 7 2.6900 - 2.5500 1.00 2691 129 0.2346 0.2925 REMARK 3 8 2.5500 - 2.4400 1.00 2608 146 0.2343 0.2664 REMARK 3 9 2.4400 - 2.3500 1.00 2719 145 0.2347 0.2865 REMARK 3 10 2.3500 - 2.2700 1.00 2630 140 0.2314 0.2951 REMARK 3 11 2.2700 - 2.2000 1.00 2701 138 0.2332 0.3037 REMARK 3 12 2.2000 - 2.1300 1.00 2659 129 0.2430 0.3200 REMARK 3 13 2.1300 - 2.0800 1.00 2703 141 0.2407 0.2804 REMARK 3 14 2.0800 - 2.0300 0.99 2625 162 0.2604 0.2923 REMARK 3 15 2.0300 - 1.9800 0.99 2574 137 0.2637 0.3568 REMARK 3 16 1.9800 - 1.9400 0.99 2711 138 0.2929 0.3433 REMARK 3 17 1.9400 - 1.9000 0.99 2631 142 0.3299 0.3727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.268 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4955 REMARK 3 ANGLE : 0.970 6785 REMARK 3 CHIRALITY : 0.058 802 REMARK 3 PLANARITY : 0.008 881 REMARK 3 DIHEDRAL : 5.809 653 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 36 through 49 or REMARK 3 (resid 50 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 51 REMARK 3 through 58 or (resid 59 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 60 through 68 or (resid 69 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 70 through 72 or REMARK 3 (resid 73 through 74 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 75 through 99 or (resid 100 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 101 through 143 or REMARK 3 (resid 144 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 145 REMARK 3 through 163 or (resid 164 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 165 through 191 or REMARK 3 (resid 192 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 193 or REMARK 3 (resid 194 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 195 REMARK 3 through 234 or (resid 235 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 236 through 271)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 36 or (resid 37 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 38 or (resid 39 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 40 through 42 or REMARK 3 (resid 43 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 44 REMARK 3 through 48 or (resid 49 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD )) or resid 50 through REMARK 3 104 or (resid 105 and (name N or name CA REMARK 3 or name C or name O or name CB )) or REMARK 3 resid 106 through 111 or (resid 112 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 113 or (resid 114 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD )) or resid REMARK 3 115 through 123 or (resid 124 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 or name CG )) or resid 125 through 141 or REMARK 3 (resid 142 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 143 REMARK 3 through 144 or (resid 145 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or resid 146 through 173 or REMARK 3 (resid 174 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 175 through 266 or (resid 267 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 268 through 271)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 54 through 55 or REMARK 3 (resid 56 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG or name REMARK 3 CD )) or resid 57 through 75 or (resid 76 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 77 through 89 or REMARK 3 (resid 90 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 91 REMARK 3 through 96 or (resid 97 through 98 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 99 or (resid 100 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 101 through 108 or REMARK 3 (resid 109 through 111 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 112 through 119 or (resid 120 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 121 through 130)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 54 through 63 or REMARK 3 (resid 67 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 68 REMARK 3 through 85 or (resid 86 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 87 through 105 or (resid 106 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG )) or resid 107 REMARK 3 through 109 or (resid 110 through 111 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 112 through 120 or REMARK 3 (resid 121 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG )) or REMARK 3 resid 122 through 130)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20190606 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4DBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (NH4)2SO4, 0.1 M TRIS-HCL (PH REMARK 280 8.5), AND 25% (W/V) PEG3350, EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 71.34200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 34 REMARK 465 PRO B 35 REMARK 465 MET B 272 REMARK 465 GLY B 273 REMARK 465 GLY C 47 REMARK 465 PRO C 48 REMARK 465 GLY C 49 REMARK 465 SER C 50 REMARK 465 GLU C 51 REMARK 465 ALA C 64 REMARK 465 GLN C 65 REMARK 465 MET C 66 REMARK 465 ALA C 133 REMARK 465 ARG C 134 REMARK 465 ASN C 135 REMARK 465 GLY A 34 REMARK 465 PRO A 35 REMARK 465 MET A 272 REMARK 465 GLY A 273 REMARK 465 GLY D 47 REMARK 465 PRO D 48 REMARK 465 GLY D 49 REMARK 465 SER D 50 REMARK 465 GLU D 51 REMARK 465 PHE D 52 REMARK 465 GLN D 53 REMARK 465 LEU D 131 REMARK 465 SER D 132 REMARK 465 ALA D 133 REMARK 465 ARG D 134 REMARK 465 ASN D 135 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 LEU B 69 CG CD1 CD2 REMARK 470 GLN B 72 CD OE1 NE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 GLU B 151 CD OE1 OE2 REMARK 470 HIS B 164 ND1 CD2 CE1 NE2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 470 GLN B 235 CG CD OE1 NE2 REMARK 470 ARG B 267 CD NE CZ NH1 NH2 REMARK 470 HIS C 67 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 76 NE CZ NH1 NH2 REMARK 470 ASP C 86 CG OD1 OD2 REMARK 470 GLN C 100 CD OE1 NE2 REMARK 470 GLN C 105 CG CD OE1 NE2 REMARK 470 ARG C 106 CD NE CZ NH1 NH2 REMARK 470 ASP C 110 CG OD1 OD2 REMARK 470 GLN C 121 CD OE1 NE2 REMARK 470 SER A 37 OG REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 49 OE1 OE2 REMARK 470 GLN A 72 CD OE1 NE2 REMARK 470 HIS A 105 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 112 CG SD CE REMARK 470 LYS A 114 CE NZ REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 GLU A 151 CD OE1 OE2 REMARK 470 LYS A 174 CD CE NZ REMARK 470 GLU A 194 CD OE1 OE2 REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 56 NE CZ NH1 NH2 REMARK 470 GLN D 65 CG CD OE1 NE2 REMARK 470 ARG D 76 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 90 CG CD1 CD2 REMARK 470 VAL D 97 CG1 CG2 REMARK 470 LEU D 98 CG CD1 CD2 REMARK 470 GLN D 100 CG CD OE1 NE2 REMARK 470 GLN D 105 CG CD OE1 NE2 REMARK 470 ARG D 106 NE CZ NH1 NH2 REMARK 470 ARG D 109 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 111 CG CD OE1 NE2 REMARK 470 ARG D 120 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 426 O HOH A 436 1.85 REMARK 500 OE1 GLN A 205 O HOH A 301 1.86 REMARK 500 OH TYR D 92 O HOH D 201 1.92 REMARK 500 O HOH A 302 O HOH A 408 1.93 REMARK 500 O HOH A 376 O HOH A 455 1.97 REMARK 500 O HOH B 382 O HOH B 386 2.04 REMARK 500 O SER A 271 O HOH A 302 2.05 REMARK 500 NE2 GLN D 121 O HOH D 202 2.05 REMARK 500 O HOH B 308 O HOH B 434 2.06 REMARK 500 OD1 ASP C 54 O HOH C 201 2.06 REMARK 500 O HOH A 346 O HOH A 487 2.08 REMARK 500 OE2 GLU A 56 O HOH A 303 2.08 REMARK 500 O HOH A 304 O HOH A 456 2.08 REMARK 500 O HOH B 440 O HOH B 457 2.11 REMARK 500 N SER A 37 O HOH A 304 2.11 REMARK 500 O HOH A 310 O HOH A 473 2.14 REMARK 500 O SER B 271 O HOH B 301 2.15 REMARK 500 O HOH A 301 O HOH A 305 2.19 REMARK 500 O HOH A 490 O HOH A 491 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 454 O HOH A 456 1556 1.93 REMARK 500 O HOH B 436 O HOH C 216 1455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 101 -157.78 -126.60 REMARK 500 ASN B 121 -157.07 -125.10 REMARK 500 ASN B 141 -157.92 -135.31 REMARK 500 ASN B 161 -156.21 -131.47 REMARK 500 ASN B 181 -154.06 -119.94 REMARK 500 GLN C 105 -5.47 65.92 REMARK 500 ASN A 101 -159.26 -128.28 REMARK 500 ASN A 121 -157.20 -126.62 REMARK 500 ASN A 141 -156.85 -132.64 REMARK 500 ASN A 161 -158.32 -131.45 REMARK 500 ASN A 181 -155.26 -119.57 REMARK 500 ASN A 201 -163.03 -129.50 REMARK 500 ASN A 221 -161.86 -127.81 REMARK 500 GLN D 105 -6.18 66.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 7V8E B 39 273 UNP Q9AFJ5 Q9AFJ5_SHIFM 46 280 DBREF 7V8E C 53 135 UNP Q9BYM8 HOIL1_HUMAN 53 135 DBREF 7V8E A 39 273 UNP Q9AFJ5 Q9AFJ5_SHIFM 46 280 DBREF 7V8E D 53 135 UNP Q9BYM8 HOIL1_HUMAN 53 135 SEQADV 7V8E GLY B 34 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E PRO B 35 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E GLY B 36 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E SER B 37 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E ASN B 38 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E GLY C 47 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E PRO C 48 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E GLY C 49 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E SER C 50 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E GLU C 51 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E PHE C 52 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E GLY A 34 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E PRO A 35 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E GLY A 36 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E SER A 37 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E ASN A 38 UNP Q9AFJ5 EXPRESSION TAG SEQADV 7V8E GLY D 47 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E PRO D 48 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E GLY D 49 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E SER D 50 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E GLU D 51 UNP Q9BYM8 EXPRESSION TAG SEQADV 7V8E PHE D 52 UNP Q9BYM8 EXPRESSION TAG SEQRES 1 B 240 GLY PRO GLY SER ASN GLU PHE TYR LEU LYS THR TRP SER SEQRES 2 B 240 GLU TRP GLU LYS ASN GLY THR PRO GLY GLU GLN ARG ASN SEQRES 3 B 240 ILE ALA PHE ASN ARG LEU LYS ILE CYS LEU GLN ASN GLN SEQRES 4 B 240 GLU ALA GLU LEU ASN LEU SER GLU LEU ASP LEU LYS THR SEQRES 5 B 240 LEU PRO ASP LEU PRO PRO GLN ILE THR THR LEU GLU ILE SEQRES 6 B 240 ARG LYS ASN LEU LEU THR HIS LEU PRO ASP LEU PRO PRO SEQRES 7 B 240 MET LEU LYS VAL ILE HIS ALA GLN PHE ASN GLN LEU GLU SEQRES 8 B 240 SER LEU PRO ALA LEU PRO GLU THR LEU GLU GLU LEU ASN SEQRES 9 B 240 ALA GLY ASP ASN LYS ILE LYS GLU LEU PRO PHE LEU PRO SEQRES 10 B 240 GLU ASN LEU THR HIS LEU ARG VAL HIS ASN ASN ARG LEU SEQRES 11 B 240 HIS ILE LEU PRO LEU LEU PRO PRO GLU LEU LYS LEU LEU SEQRES 12 B 240 VAL VAL SER GLY ASN ARG LEU ASP SER ILE PRO PRO PHE SEQRES 13 B 240 PRO ASP LYS LEU GLU GLY LEU ALA LEU ALA ASN ASN PHE SEQRES 14 B 240 ILE GLU GLN LEU PRO GLU LEU PRO PHE SER MET ASN ARG SEQRES 15 B 240 ALA VAL LEU MET ASN ASN ASN LEU THR THR LEU PRO GLU SEQRES 16 B 240 SER VAL LEU ARG LEU ALA GLN ASN ALA PHE VAL ASN VAL SEQRES 17 B 240 ALA GLY ASN PRO LEU SER GLY HIS THR MET ARG THR LEU SEQRES 18 B 240 GLN GLN ILE THR THR GLY PRO ASP TYR SER GLY PRO ARG SEQRES 19 B 240 ILE PHE PHE SER MET GLY SEQRES 1 C 89 GLY PRO GLY SER GLU PHE GLN ASP ILE ARG LEU TRP VAL SEQRES 2 C 89 SER VAL GLU ASP ALA GLN MET HIS THR VAL THR ILE TRP SEQRES 3 C 89 LEU THR VAL ARG PRO ASP MET THR VAL ALA SER LEU LYS SEQRES 4 C 89 ASP MET VAL PHE LEU ASP TYR GLY PHE PRO PRO VAL LEU SEQRES 5 C 89 GLN GLN TRP VAL ILE GLY GLN ARG LEU ALA ARG ASP GLN SEQRES 6 C 89 GLU THR LEU HIS SER HIS GLY VAL ARG GLN ASN GLY ASP SEQRES 7 C 89 SER ALA TYR LEU TYR LEU LEU SER ALA ARG ASN SEQRES 1 A 240 GLY PRO GLY SER ASN GLU PHE TYR LEU LYS THR TRP SER SEQRES 2 A 240 GLU TRP GLU LYS ASN GLY THR PRO GLY GLU GLN ARG ASN SEQRES 3 A 240 ILE ALA PHE ASN ARG LEU LYS ILE CYS LEU GLN ASN GLN SEQRES 4 A 240 GLU ALA GLU LEU ASN LEU SER GLU LEU ASP LEU LYS THR SEQRES 5 A 240 LEU PRO ASP LEU PRO PRO GLN ILE THR THR LEU GLU ILE SEQRES 6 A 240 ARG LYS ASN LEU LEU THR HIS LEU PRO ASP LEU PRO PRO SEQRES 7 A 240 MET LEU LYS VAL ILE HIS ALA GLN PHE ASN GLN LEU GLU SEQRES 8 A 240 SER LEU PRO ALA LEU PRO GLU THR LEU GLU GLU LEU ASN SEQRES 9 A 240 ALA GLY ASP ASN LYS ILE LYS GLU LEU PRO PHE LEU PRO SEQRES 10 A 240 GLU ASN LEU THR HIS LEU ARG VAL HIS ASN ASN ARG LEU SEQRES 11 A 240 HIS ILE LEU PRO LEU LEU PRO PRO GLU LEU LYS LEU LEU SEQRES 12 A 240 VAL VAL SER GLY ASN ARG LEU ASP SER ILE PRO PRO PHE SEQRES 13 A 240 PRO ASP LYS LEU GLU GLY LEU ALA LEU ALA ASN ASN PHE SEQRES 14 A 240 ILE GLU GLN LEU PRO GLU LEU PRO PHE SER MET ASN ARG SEQRES 15 A 240 ALA VAL LEU MET ASN ASN ASN LEU THR THR LEU PRO GLU SEQRES 16 A 240 SER VAL LEU ARG LEU ALA GLN ASN ALA PHE VAL ASN VAL SEQRES 17 A 240 ALA GLY ASN PRO LEU SER GLY HIS THR MET ARG THR LEU SEQRES 18 A 240 GLN GLN ILE THR THR GLY PRO ASP TYR SER GLY PRO ARG SEQRES 19 A 240 ILE PHE PHE SER MET GLY SEQRES 1 D 89 GLY PRO GLY SER GLU PHE GLN ASP ILE ARG LEU TRP VAL SEQRES 2 D 89 SER VAL GLU ASP ALA GLN MET HIS THR VAL THR ILE TRP SEQRES 3 D 89 LEU THR VAL ARG PRO ASP MET THR VAL ALA SER LEU LYS SEQRES 4 D 89 ASP MET VAL PHE LEU ASP TYR GLY PHE PRO PRO VAL LEU SEQRES 5 D 89 GLN GLN TRP VAL ILE GLY GLN ARG LEU ALA ARG ASP GLN SEQRES 6 D 89 GLU THR LEU HIS SER HIS GLY VAL ARG GLN ASN GLY ASP SEQRES 7 D 89 SER ALA TYR LEU TYR LEU LEU SER ALA ARG ASN FORMUL 5 HOH *431(H2 O) HELIX 1 AA1 GLY B 36 LYS B 50 1 15 HELIX 2 AA2 GLN B 57 ASN B 71 1 15 HELIX 3 AA3 PRO B 227 LEU B 233 5 7 HELIX 4 AA4 SER B 247 THR B 259 1 13 HELIX 5 AA5 THR C 80 GLY C 93 1 14 HELIX 6 AA6 PRO C 95 VAL C 97 5 3 HELIX 7 AA7 LEU C 114 GLY C 118 5 5 HELIX 8 AA8 SER A 37 ASN A 51 1 15 HELIX 9 AA9 GLN A 57 ASN A 71 1 15 HELIX 10 AB1 PRO A 227 LEU A 233 5 7 HELIX 11 AB2 SER A 247 THR A 259 1 13 HELIX 12 AB3 THR D 80 GLY D 93 1 14 HELIX 13 AB4 PRO D 95 GLN D 99 5 5 HELIX 14 AB5 LEU D 114 GLY D 118 5 5 SHEET 1 AA110 GLU B 75 ASN B 77 0 SHEET 2 AA110 THR B 95 GLU B 97 1 O GLU B 97 N LEU B 76 SHEET 3 AA110 VAL B 115 HIS B 117 1 O HIS B 117 N LEU B 96 SHEET 4 AA110 GLU B 135 ASN B 137 1 O GLU B 135 N ILE B 116 SHEET 5 AA110 HIS B 155 ARG B 157 1 O ARG B 157 N LEU B 136 SHEET 6 AA110 LEU B 175 VAL B 177 1 O VAL B 177 N LEU B 156 SHEET 7 AA110 GLY B 195 ALA B 197 1 O ALA B 197 N LEU B 176 SHEET 8 AA110 ARG B 215 VAL B 217 1 O VAL B 217 N LEU B 196 SHEET 9 AA110 PHE B 238 ASN B 240 1 O ASN B 240 N ALA B 216 SHEET 10 AA110 ARG B 267 PHE B 269 1 O PHE B 269 N VAL B 239 SHEET 1 AA2 4 VAL C 69 VAL C 75 0 SHEET 2 AA2 4 ILE C 55 GLU C 62 -1 N ILE C 55 O VAL C 75 SHEET 3 AA2 4 ASP C 124 LEU C 130 1 O ASP C 124 N TRP C 58 SHEET 4 AA2 4 GLN C 99 VAL C 102 -1 N VAL C 102 O TYR C 127 SHEET 1 AA310 GLU A 75 ASN A 77 0 SHEET 2 AA310 THR A 95 GLU A 97 1 O GLU A 97 N LEU A 76 SHEET 3 AA310 VAL A 115 HIS A 117 1 O HIS A 117 N LEU A 96 SHEET 4 AA310 GLU A 135 ASN A 137 1 O ASN A 137 N ILE A 116 SHEET 5 AA310 HIS A 155 ARG A 157 1 O ARG A 157 N LEU A 136 SHEET 6 AA310 LEU A 175 VAL A 177 1 O VAL A 177 N LEU A 156 SHEET 7 AA310 GLY A 195 ALA A 197 1 O ALA A 197 N LEU A 176 SHEET 8 AA310 ARG A 215 VAL A 217 1 O VAL A 217 N LEU A 196 SHEET 9 AA310 PHE A 238 ASN A 240 1 O ASN A 240 N ALA A 216 SHEET 10 AA310 ARG A 267 PHE A 269 1 O PHE A 269 N VAL A 239 SHEET 1 AA4 4 HIS D 67 VAL D 75 0 SHEET 2 AA4 4 ILE D 55 GLU D 62 -1 N LEU D 57 O LEU D 73 SHEET 3 AA4 4 ASP D 124 TYR D 129 1 O LEU D 128 N GLU D 62 SHEET 4 AA4 4 GLN D 100 VAL D 102 -1 N GLN D 100 O TYR D 129 CRYST1 31.809 142.684 68.598 90.00 94.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031438 0.000000 0.002218 0.00000 SCALE2 0.000000 0.007008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014614 0.00000 MTRIX1 1 0.993262 0.037922 0.109514 5.43914 1 MTRIX2 1 0.037902 -0.999279 0.002267 8.19530 1 MTRIX3 1 0.109521 0.001899 -0.993983 -32.35830 1 MTRIX1 2 0.999667 -0.025587 0.003313 -4.77015 1 MTRIX2 2 -0.025619 -0.999621 0.010035 8.35848 1 MTRIX3 2 0.003055 -0.010117 -0.999944 -32.24287 1