data_7V9E # _entry.id 7V9E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7V9E pdb_00007v9e 10.2210/pdb7v9e/pdb WWPDB D_1300024321 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-23 2 'Structure model' 1 1 2022-03-30 3 'Structure model' 1 2 2022-05-11 4 'Structure model' 1 3 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7V9E _pdbx_database_status.recvd_initial_deposition_date 2021-08-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Deng, J.' 1 ? 'Lilley, D.M.J.' 2 ? 'Huang, L.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 556 _citation.page_last 564 _citation.title 'Structure and mechanism of a methyltransferase ribozyme.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-022-00982-z _citation.pdbx_database_id_PubMed 35301479 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deng, J.' 1 ? primary 'Wilson, T.J.' 2 ? primary 'Wang, J.' 3 ? primary 'Peng, X.' 4 ? primary 'Li, M.' 5 ? primary 'Lin, X.' 6 ? primary 'Liao, W.' 7 ? primary 'Lilley, D.M.J.' 8 ? primary 'Huang, L.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (68-MER)' 21884.133 1 ? ? ? ? 2 non-polymer syn GUANINE 151.126 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 9 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 water nat water 18.015 32 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CGGGCUGACCGACCCCCCGAGUUCGCUCGGGGACAACUAGACAUACAGUAUGAAAAUACUG(1MA)GCCCGC' _entity_poly.pdbx_seq_one_letter_code_can CGGGCUGACCGACCCCCCGAGUUCGCUCGGGGACAACUAGACAUACAGUAUGAAAAUACUGAGCCCGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GUANINE GUN 3 'BARIUM ION' BA 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 G n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 C n 1 10 C n 1 11 G n 1 12 A n 1 13 C n 1 14 C n 1 15 C n 1 16 C n 1 17 C n 1 18 C n 1 19 G n 1 20 A n 1 21 G n 1 22 U n 1 23 U n 1 24 C n 1 25 G n 1 26 C n 1 27 U n 1 28 C n 1 29 G n 1 30 G n 1 31 G n 1 32 G n 1 33 A n 1 34 C n 1 35 A n 1 36 A n 1 37 C n 1 38 U n 1 39 A n 1 40 G n 1 41 A n 1 42 C n 1 43 A n 1 44 U n 1 45 A n 1 46 C n 1 47 A n 1 48 G n 1 49 U n 1 50 A n 1 51 U n 1 52 G n 1 53 A n 1 54 A n 1 55 A n 1 56 A n 1 57 U n 1 58 A n 1 59 C n 1 60 U n 1 61 G n 1 62 1MA n 1 63 G n 1 64 C n 1 65 C n 1 66 C n 1 67 G n 1 68 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 68 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GUN non-polymer . GUANINE ? 'C5 H5 N5 O' 151.126 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 2 2 C C A . n A 1 2 G 2 3 3 G G A . n A 1 3 G 3 4 4 G G A . n A 1 4 G 4 5 5 G G A . n A 1 5 C 5 6 6 C C A . n A 1 6 U 6 7 7 U U A . n A 1 7 G 7 8 8 G G A . n A 1 8 A 8 9 9 A A A . n A 1 9 C 9 10 10 C C A . n A 1 10 C 10 11 11 C C A . n A 1 11 G 11 12 12 G G A . n A 1 12 A 12 13 13 A A A . n A 1 13 C 13 14 14 C C A . n A 1 14 C 14 15 15 C C A . n A 1 15 C 15 16 16 C C A . n A 1 16 C 16 17 17 C C A . n A 1 17 C 17 18 18 C C A . n A 1 18 C 18 19 19 C C A . n A 1 19 G 19 20 20 G G A . n A 1 20 A 20 21 21 A A A . n A 1 21 G 21 22 22 G G A . n A 1 22 U 22 23 23 U U A . n A 1 23 U 23 24 24 U U A . n A 1 24 C 24 25 25 C C A . n A 1 25 G 25 26 26 G G A . n A 1 26 C 26 27 27 C C A . n A 1 27 U 27 28 28 U U A . n A 1 28 C 28 29 29 C C A . n A 1 29 G 29 30 30 G G A . n A 1 30 G 30 31 31 G G A . n A 1 31 G 31 32 32 G G A . n A 1 32 G 32 33 33 G G A . n A 1 33 A 33 34 34 A A A . n A 1 34 C 34 35 35 C C A . n A 1 35 A 35 36 36 A A A . n A 1 36 A 36 37 37 A A A . n A 1 37 C 37 38 38 C C A . n A 1 38 U 38 39 39 U U A . n A 1 39 A 39 40 40 A A A . n A 1 40 G 40 41 41 G G A . n A 1 41 A 41 42 42 A A A . n A 1 42 C 42 43 43 C C A . n A 1 43 A 43 44 44 A A A . n A 1 44 U 44 45 45 U U A . n A 1 45 A 45 46 46 A A A . n A 1 46 C 46 47 47 C C A . n A 1 47 A 47 48 48 A A A . n A 1 48 G 48 49 49 G G A . n A 1 49 U 49 50 50 U U A . n A 1 50 A 50 51 51 A A A . n A 1 51 U 51 52 52 U U A . n A 1 52 G 52 53 53 G G A . n A 1 53 A 53 54 54 A A A . n A 1 54 A 54 55 55 A A A . n A 1 55 A 55 56 56 A A A . n A 1 56 A 56 57 57 A A A . n A 1 57 U 57 58 58 U U A . n A 1 58 A 58 59 59 A A A . n A 1 59 C 59 60 60 C C A . n A 1 60 U 60 61 61 U U A . n A 1 61 G 61 62 62 G G A . n A 1 62 1MA 62 63 63 1MA 1MA A . n A 1 63 G 63 64 64 G G A . n A 1 64 C 64 65 65 C C A . n A 1 65 C 65 66 66 C C A . n A 1 66 C 66 67 67 C C A . n A 1 67 G 67 68 68 G G A . n A 1 68 C 68 69 69 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GUN 1 101 101 GUN GUN A . C 3 BA 1 102 1 BA BA A . D 3 BA 1 103 2 BA BA A . E 3 BA 1 104 3 BA BA A . F 3 BA 1 105 4 BA BA A . G 3 BA 1 106 5 BA BA A . H 3 BA 1 107 6 BA BA A . I 3 BA 1 108 7 BA BA A . J 3 BA 1 109 8 BA BA A . K 3 BA 1 110 9 BA BA A . L 4 NA 1 111 1 NA NA A . M 4 NA 1 112 2 NA NA A . N 5 HOH 1 201 1 HOH HOH A . N 5 HOH 2 202 28 HOH HOH A . N 5 HOH 3 203 23 HOH HOH A . N 5 HOH 4 204 17 HOH HOH A . N 5 HOH 5 205 3 HOH HOH A . N 5 HOH 6 206 30 HOH HOH A . N 5 HOH 7 207 5 HOH HOH A . N 5 HOH 8 208 11 HOH HOH A . N 5 HOH 9 209 12 HOH HOH A . N 5 HOH 10 210 15 HOH HOH A . N 5 HOH 11 211 26 HOH HOH A . N 5 HOH 12 212 21 HOH HOH A . N 5 HOH 13 213 10 HOH HOH A . N 5 HOH 14 214 2 HOH HOH A . N 5 HOH 15 215 31 HOH HOH A . N 5 HOH 16 216 18 HOH HOH A . N 5 HOH 17 217 22 HOH HOH A . N 5 HOH 18 218 4 HOH HOH A . N 5 HOH 19 219 7 HOH HOH A . N 5 HOH 20 220 20 HOH HOH A . N 5 HOH 21 221 32 HOH HOH A . N 5 HOH 22 222 29 HOH HOH A . N 5 HOH 23 223 8 HOH HOH A . N 5 HOH 24 224 19 HOH HOH A . N 5 HOH 25 225 9 HOH HOH A . N 5 HOH 26 226 27 HOH HOH A . N 5 HOH 27 227 13 HOH HOH A . N 5 HOH 28 228 25 HOH HOH A . N 5 HOH 29 229 24 HOH HOH A . N 5 HOH 30 230 6 HOH HOH A . N 5 HOH 31 231 16 HOH HOH A . N 5 HOH 32 232 14 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A A 56 ? "O2'" ? A A 55 "O2'" 2 1 Y 1 A A 56 ? N9 ? A A 55 N9 3 1 Y 1 A A 56 ? C8 ? A A 55 C8 4 1 Y 1 A A 56 ? N7 ? A A 55 N7 5 1 Y 1 A A 56 ? C5 ? A A 55 C5 6 1 Y 1 A A 56 ? C6 ? A A 55 C6 7 1 Y 1 A A 56 ? N6 ? A A 55 N6 8 1 Y 1 A A 56 ? N1 ? A A 55 N1 9 1 Y 1 A A 56 ? C2 ? A A 55 C2 10 1 Y 1 A A 56 ? N3 ? A A 55 N3 11 1 Y 1 A A 56 ? C4 ? A A 55 C4 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? ADDREF ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7V9E _cell.details ? _cell.formula_units_Z ? _cell.length_a 50.381 _cell.length_a_esd ? _cell.length_b 52.507 _cell.length_b_esd ? _cell.length_c 99.939 _cell.length_c_esd ? _cell.volume 264374.150 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7V9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall 'P 2c 2' _symmetry.space_group_name_H-M 'P 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7V9E _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.45 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Potassium chloride, 0.02 M Barium chloride dihydrate, 0.04 M Sodium cacodylate trihydrate pH 6.8, 32% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-07-21 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 49.40 _reflns.entry_id 7V9E _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 50.38 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21996 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 2.5 _reflns.percent_possible_obs 98.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.1 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.045 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.43 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1753 _reflns_shell.percent_possible_all 99.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.622 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.420 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.75 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 65.04 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7V9E _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.30 _refine.ls_d_res_low 24.43 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21996 _refine.ls_number_reflns_R_free 1132 _refine.ls_number_reflns_R_work 20864 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.84 _refine.ls_percent_reflns_R_free 5.15 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2452 _refine.ls_R_factor_R_free 0.2706 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2437 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.6724 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3698 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 24.43 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1494 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1440 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0039 ? 1621 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.7152 ? 2522 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0316 ? 337 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0059 ? 68 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.6380 ? 804 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.30 2.41 . . 171 2632 98.63 . . . 0.3539 . 0.3301 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.41 2.53 . . 115 2687 99.05 . . . 0.3700 . 0.3224 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.53 2.69 . . 132 2680 98.84 . . . 0.4194 . 0.3374 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.69 2.90 . . 144 2622 97.77 . . . 0.3765 . 0.3349 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.90 3.19 . . 126 2591 96.35 . . . 0.2718 . 0.2767 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.19 3.65 . . 133 2641 96.59 . . . 0.2656 . 0.2186 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.65 4.59 . . 168 2536 95.31 . . . 0.1982 . 0.1930 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.60 24.43 . . 143 2475 92.35 . . . 0.2630 . 0.2185 . . . . . . . . . . . # _struct.entry_id 7V9E _struct.title 'Crystal structure of a methyl transferase ribozyme' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7V9E _struct_keywords.text 'methyl transferase, ribozyme, riboswitch, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 4 ? N N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7V9E _struct_ref.pdbx_db_accession 7V9E _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7V9E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 68 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7V9E _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 69 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 69 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3040 ? 1 MORE -82 ? 1 'SSA (A^2)' 11850 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 61 "O3'" ? ? ? 1_555 A 1MA 62 P ? ? A G 62 A 1MA 63 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale2 covale both ? A 1MA 62 "O3'" ? ? ? 1_555 A G 63 P ? ? A 1MA 63 A G 64 1_555 ? ? ? ? ? ? ? 1.602 ? ? metalc1 metalc ? ? A G 30 O6 ? ? ? 1_555 D BA . BA ? ? A G 31 A BA 103 1_555 ? ? ? ? ? ? ? 2.714 ? ? metalc2 metalc ? ? A C 34 O2 ? ? ? 1_555 M NA . NA ? ? A C 35 A NA 112 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc3 metalc ? ? A A 35 "O3'" ? ? ? 1_555 C BA . BA ? ? A A 36 A BA 102 1_555 ? ? ? ? ? ? ? 2.991 ? ? metalc4 metalc ? ? A A 35 "O2'" ? ? ? 1_555 C BA . BA ? ? A A 36 A BA 102 1_555 ? ? ? ? ? ? ? 2.829 ? ? metalc5 metalc ? ? A A 36 OP2 ? ? ? 1_555 C BA . BA ? ? A A 37 A BA 102 1_555 ? ? ? ? ? ? ? 2.847 ? ? metalc6 metalc ? ? A G 40 OP2 ? ? ? 1_555 J BA . BA ? ? A G 41 A BA 109 1_555 ? ? ? ? ? ? ? 2.696 ? ? metalc7 metalc ? ? A U 44 O4 ? ? ? 1_555 J BA . BA ? ? A U 45 A BA 109 1_555 ? ? ? ? ? ? ? 3.326 ? ? metalc8 metalc ? ? A U 51 O4 ? ? ? 1_555 I BA . BA ? ? A U 52 A BA 108 1_555 ? ? ? ? ? ? ? 2.948 ? ? metalc9 metalc ? ? A G 52 O6 ? ? ? 1_555 I BA . BA ? ? A G 53 A BA 108 1_555 ? ? ? ? ? ? ? 2.765 ? ? metalc10 metalc ? ? D BA . BA ? ? ? 1_555 N HOH . O ? ? A BA 103 A HOH 208 1_555 ? ? ? ? ? ? ? 3.119 ? ? metalc11 metalc ? ? E BA . BA ? ? ? 1_555 N HOH . O ? ? A BA 104 A HOH 220 1_555 ? ? ? ? ? ? ? 2.890 ? ? metalc12 metalc ? ? E BA . BA ? ? ? 1_555 N HOH . O ? ? A BA 104 A HOH 220 4_556 ? ? ? ? ? ? ? 2.722 ? ? metalc13 metalc ? ? G BA . BA ? ? ? 1_555 N HOH . O ? ? A BA 106 A HOH 220 1_555 ? ? ? ? ? ? ? 3.348 ? ? metalc14 metalc ? ? I BA . BA ? ? ? 1_555 N HOH . O ? ? A BA 108 A HOH 203 1_555 ? ? ? ? ? ? ? 2.809 ? ? metalc15 metalc ? ? I BA . BA ? ? ? 1_555 N HOH . O ? ? A BA 108 A HOH 219 1_555 ? ? ? ? ? ? ? 2.602 ? ? metalc16 metalc ? ? M NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 112 A HOH 224 1_555 ? ? ? ? ? ? ? 2.520 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 2 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 2 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 2 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 3 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 3 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 3 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 4 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 4 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 4 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 5 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 6 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 6 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 6 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 36 N7 ? ? A U 7 A A 37 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog17 hydrog ? ? A U 6 O2 ? ? ? 1_555 A A 36 N6 ? ? A U 7 A A 37 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 8 A C 38 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 A A 45 N3 ? ? A A 9 A A 46 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 11 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 11 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 11 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 O2 ? ? ? 1_555 A A 43 N6 ? ? A C 11 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 12 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 12 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 12 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 N4 ? ? ? 1_555 A A 33 N1 ? ? A C 15 A A 34 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 16 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 16 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 16 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 31 N1 ? ? A C 17 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 31 O6 ? ? A C 17 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 31 N2 ? ? A C 17 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 18 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 18 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 18 A G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 19 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 20 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 20 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 20 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 21 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 21 A U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 22 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 22 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 22 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 22 O2 ? ? ? 1_555 A G 25 N1 ? ? A U 23 A G 26 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog49 hydrog ? ? A A 39 N3 ? ? ? 1_555 A A 45 N6 ? ? A A 40 A A 46 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog50 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 61 N1 ? ? A C 47 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 61 O6 ? ? A C 47 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 47 A G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 47 N1 ? ? ? 1_555 A U 60 N3 ? ? A A 48 A U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 47 N6 ? ? ? 1_555 A U 60 O4 ? ? A A 48 A U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 49 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 49 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 49 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 58 N1 ? ? A U 50 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 49 O4 ? ? ? 1_555 A A 58 N6 ? ? A U 50 A A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 50 N1 ? ? ? 1_555 A U 57 N3 ? ? A A 51 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 50 N6 ? ? ? 1_555 A U 57 O4 ? ? A A 51 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 56 N1 ? ? A U 52 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 56 N6 ? ? A U 52 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 30 ? A G 31 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O ? N HOH . ? A HOH 208 ? 1_555 84.8 ? 2 O2 ? A C 34 ? A C 35 ? 1_555 NA ? M NA . ? A NA 112 ? 1_555 O ? N HOH . ? A HOH 224 ? 1_555 76.7 ? 3 "O3'" ? A A 35 ? A A 36 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 "O2'" ? A A 35 ? A A 36 ? 1_555 56.4 ? 4 "O3'" ? A A 35 ? A A 36 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 OP2 ? A A 36 ? A A 37 ? 1_555 50.6 ? 5 "O2'" ? A A 35 ? A A 36 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 OP2 ? A A 36 ? A A 37 ? 1_555 103.5 ? 6 OP2 ? A G 40 ? A G 41 ? 1_555 BA ? J BA . ? A BA 109 ? 1_555 O4 ? A U 44 ? A U 45 ? 1_555 61.9 ? 7 O4 ? A U 51 ? A U 52 ? 1_555 BA ? I BA . ? A BA 108 ? 1_555 O6 ? A G 52 ? A G 53 ? 1_555 60.6 ? 8 O4 ? A U 51 ? A U 52 ? 1_555 BA ? I BA . ? A BA 108 ? 1_555 O ? N HOH . ? A HOH 203 ? 1_555 73.9 ? 9 O6 ? A G 52 ? A G 53 ? 1_555 BA ? I BA . ? A BA 108 ? 1_555 O ? N HOH . ? A HOH 203 ? 1_555 72.1 ? 10 O4 ? A U 51 ? A U 52 ? 1_555 BA ? I BA . ? A BA 108 ? 1_555 O ? N HOH . ? A HOH 219 ? 1_555 115.2 ? 11 O6 ? A G 52 ? A G 53 ? 1_555 BA ? I BA . ? A BA 108 ? 1_555 O ? N HOH . ? A HOH 219 ? 1_555 67.3 ? 12 O ? N HOH . ? A HOH 203 ? 1_555 BA ? I BA . ? A BA 108 ? 1_555 O ? N HOH . ? A HOH 219 ? 1_555 122.7 ? 13 O ? N HOH . ? A HOH 220 ? 1_555 BA ? E BA . ? A BA 104 ? 1_555 O ? N HOH . ? A HOH 220 ? 4_556 64.5 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 A C 69 ? ? O A HOH 201 ? ? 1.88 2 1 "O3'" A C 69 ? ? O A HOH 202 ? ? 1.93 3 1 O A HOH 225 ? ? O A HOH 229 ? ? 2.02 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 33.4967685531 3.47711915749 40.6796120763 0.355361159621 ? -0.034657572586 ? -0.0303349431152 ? 0.387775073891 ? 0.054110836337 ? 0.413650008097 ? 2.40770296888 ? -0.242336009148 ? 0.156868791478 ? 1.21524502899 ? -0.512877674635 ? 2.95684087125 ? -0.187475276902 ? 0.385304530248 ? 0.243357202488 ? -0.121984808562 ? -0.185428265694 ? -0.270904441785 ? -0.28653382308 ? 0.347272429772 ? 0.326166615336 ? 2 'X-RAY DIFFRACTION' ? refined 45.0763331609 -15.1615909145 20.7389759619 1.96427998737 ? 0.0800796789615 ? 1.55622158795 ? 1.17881325212 ? -0.319793257595 ? 1.92055316937 ? 6.06795888759 ? -0.746152221689 ? -3.21479232032 ? 0.116756653304 ? 0.681315988066 ? 5.47666182324 ? 0.186260247734 ? 1.05483129131 ? 0.450429643348 ? -0.747139424517 ? -0.00569276443309 ? -0.682126381349 ? -0.455382486708 ? 0.383499371165 ? -0.635734873082 ? 3 'X-RAY DIFFRACTION' ? refined 32.5288980247 3.30089787454 35.9495192657 0.356271665106 ? 0.0101996944945 ? 0.0212306759972 ? 0.47723011969 ? 0.0152312900497 ? 0.366916637864 ? 4.13710278708 ? -0.365031900352 ? -0.214533648727 ? 4.55895745186 ? 0.903381539634 ? 3.80856955591 ? -0.284918655286 ? 0.162386234301 ? 0.241175464091 ? -0.371472074922 ? 0.0135438453763 ? -0.462692110277 ? -0.224568955765 ? 0.43737062039 ? 0.198249099453 ? 4 'X-RAY DIFFRACTION' ? refined 15.7635751083 18.5884189893 39.0278653032 0.390258644802 ? 0.0948656952748 ? -0.214084474078 ? 0.495359447542 ? -0.0122746300788 ? 0.596472315667 ? 1.2615588318 ? 0.198172348261 ? -0.102704980066 ? 2.2389648755 ? -0.995439575742 ? 1.04168390472 ? -0.309425811159 ? 0.0553206361081 ? 0.53656117268 ? 0.201126300474 ? -0.0043202417743 ? 0.427907331679 ? -0.216725216196 ? -0.364694433518 ? 0.291033066202 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 2 ? A ? A 21 ? ? ;chain 'A' and (resid 2 through 21 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 22 ? A ? A 26 ? ? ;chain 'A' and (resid 22 through 26 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 27 ? A ? A 41 ? ? ;chain 'A' and (resid 27 through 41 ) ; 4 'X-RAY DIFFRACTION' 4 A ? A 42 ? A ? A 69 ? ? ;chain 'A' and (resid 42 through 69 ) ; # _pdbx_entry_details.entry_id 7V9E _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 232 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.15 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1MA P P N N 1 1MA OP1 O N N 2 1MA OP2 O N N 3 1MA OP3 O N N 4 1MA "O5'" O N N 5 1MA "C5'" C N N 6 1MA "C4'" C N R 7 1MA "O4'" O N N 8 1MA "C3'" C N S 9 1MA "O3'" O N N 10 1MA "C2'" C N R 11 1MA "O2'" O N N 12 1MA "C1'" C N R 13 1MA N9 N Y N 14 1MA C8 C Y N 15 1MA N7 N Y N 16 1MA C5 C Y N 17 1MA C6 C N N 18 1MA N6 N N N 19 1MA N1 N N N 20 1MA CM1 C N N 21 1MA C2 C N N 22 1MA N3 N N N 23 1MA C4 C Y N 24 1MA HOP2 H N N 25 1MA HOP3 H N N 26 1MA "H5'" H N N 27 1MA "H5''" H N N 28 1MA "H4'" H N N 29 1MA "H3'" H N N 30 1MA "HO3'" H N N 31 1MA "H2'" H N N 32 1MA "HO2'" H N N 33 1MA "H1'" H N N 34 1MA H8 H N N 35 1MA HN61 H N N 36 1MA HM11 H N N 37 1MA HM12 H N N 38 1MA HM13 H N N 39 1MA H2 H N N 40 A OP3 O N N 41 A P P N N 42 A OP1 O N N 43 A OP2 O N N 44 A "O5'" O N N 45 A "C5'" C N N 46 A "C4'" C N R 47 A "O4'" O N N 48 A "C3'" C N S 49 A "O3'" O N N 50 A "C2'" C N R 51 A "O2'" O N N 52 A "C1'" C N R 53 A N9 N Y N 54 A C8 C Y N 55 A N7 N Y N 56 A C5 C Y N 57 A C6 C Y N 58 A N6 N N N 59 A N1 N Y N 60 A C2 C Y N 61 A N3 N Y N 62 A C4 C Y N 63 A HOP3 H N N 64 A HOP2 H N N 65 A "H5'" H N N 66 A "H5''" H N N 67 A "H4'" H N N 68 A "H3'" H N N 69 A "HO3'" H N N 70 A "H2'" H N N 71 A "HO2'" H N N 72 A "H1'" H N N 73 A H8 H N N 74 A H61 H N N 75 A H62 H N N 76 A H2 H N N 77 BA BA BA N N 78 C OP3 O N N 79 C P P N N 80 C OP1 O N N 81 C OP2 O N N 82 C "O5'" O N N 83 C "C5'" C N N 84 C "C4'" C N R 85 C "O4'" O N N 86 C "C3'" C N S 87 C "O3'" O N N 88 C "C2'" C N R 89 C "O2'" O N N 90 C "C1'" C N R 91 C N1 N N N 92 C C2 C N N 93 C O2 O N N 94 C N3 N N N 95 C C4 C N N 96 C N4 N N N 97 C C5 C N N 98 C C6 C N N 99 C HOP3 H N N 100 C HOP2 H N N 101 C "H5'" H N N 102 C "H5''" H N N 103 C "H4'" H N N 104 C "H3'" H N N 105 C "HO3'" H N N 106 C "H2'" H N N 107 C "HO2'" H N N 108 C "H1'" H N N 109 C H41 H N N 110 C H42 H N N 111 C H5 H N N 112 C H6 H N N 113 G OP3 O N N 114 G P P N N 115 G OP1 O N N 116 G OP2 O N N 117 G "O5'" O N N 118 G "C5'" C N N 119 G "C4'" C N R 120 G "O4'" O N N 121 G "C3'" C N S 122 G "O3'" O N N 123 G "C2'" C N R 124 G "O2'" O N N 125 G "C1'" C N R 126 G N9 N Y N 127 G C8 C Y N 128 G N7 N Y N 129 G C5 C Y N 130 G C6 C N N 131 G O6 O N N 132 G N1 N N N 133 G C2 C N N 134 G N2 N N N 135 G N3 N N N 136 G C4 C Y N 137 G HOP3 H N N 138 G HOP2 H N N 139 G "H5'" H N N 140 G "H5''" H N N 141 G "H4'" H N N 142 G "H3'" H N N 143 G "HO3'" H N N 144 G "H2'" H N N 145 G "HO2'" H N N 146 G "H1'" H N N 147 G H8 H N N 148 G H1 H N N 149 G H21 H N N 150 G H22 H N N 151 GUN N9 N Y N 152 GUN C8 C Y N 153 GUN N7 N Y N 154 GUN C5 C Y N 155 GUN C6 C N N 156 GUN O6 O N N 157 GUN N1 N N N 158 GUN C2 C N N 159 GUN N2 N N N 160 GUN N3 N N N 161 GUN C4 C Y N 162 GUN HN9 H N N 163 GUN H8 H N N 164 GUN HN1 H N N 165 GUN HN21 H N N 166 GUN HN22 H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 NA NA NA N N 171 U OP3 O N N 172 U P P N N 173 U OP1 O N N 174 U OP2 O N N 175 U "O5'" O N N 176 U "C5'" C N N 177 U "C4'" C N R 178 U "O4'" O N N 179 U "C3'" C N S 180 U "O3'" O N N 181 U "C2'" C N R 182 U "O2'" O N N 183 U "C1'" C N R 184 U N1 N N N 185 U C2 C N N 186 U O2 O N N 187 U N3 N N N 188 U C4 C N N 189 U O4 O N N 190 U C5 C N N 191 U C6 C N N 192 U HOP3 H N N 193 U HOP2 H N N 194 U "H5'" H N N 195 U "H5''" H N N 196 U "H4'" H N N 197 U "H3'" H N N 198 U "HO3'" H N N 199 U "H2'" H N N 200 U "HO2'" H N N 201 U "H1'" H N N 202 U H3 H N N 203 U H5 H N N 204 U H6 H N N 205 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MA P OP1 doub N N 1 1MA P OP2 sing N N 2 1MA P OP3 sing N N 3 1MA P "O5'" sing N N 4 1MA OP2 HOP2 sing N N 5 1MA OP3 HOP3 sing N N 6 1MA "O5'" "C5'" sing N N 7 1MA "C5'" "C4'" sing N N 8 1MA "C5'" "H5'" sing N N 9 1MA "C5'" "H5''" sing N N 10 1MA "C4'" "O4'" sing N N 11 1MA "C4'" "C3'" sing N N 12 1MA "C4'" "H4'" sing N N 13 1MA "O4'" "C1'" sing N N 14 1MA "C3'" "O3'" sing N N 15 1MA "C3'" "C2'" sing N N 16 1MA "C3'" "H3'" sing N N 17 1MA "O3'" "HO3'" sing N N 18 1MA "C2'" "O2'" sing N N 19 1MA "C2'" "C1'" sing N N 20 1MA "C2'" "H2'" sing N N 21 1MA "O2'" "HO2'" sing N N 22 1MA "C1'" N9 sing N N 23 1MA "C1'" "H1'" sing N N 24 1MA N9 C8 sing Y N 25 1MA N9 C4 sing Y N 26 1MA C8 N7 doub Y N 27 1MA C8 H8 sing N N 28 1MA N7 C5 sing Y N 29 1MA C5 C6 sing N N 30 1MA C5 C4 doub Y N 31 1MA C6 N6 doub N N 32 1MA C6 N1 sing N N 33 1MA N6 HN61 sing N N 34 1MA N1 CM1 sing N N 35 1MA N1 C2 sing N N 36 1MA CM1 HM11 sing N N 37 1MA CM1 HM12 sing N N 38 1MA CM1 HM13 sing N N 39 1MA C2 N3 doub N N 40 1MA C2 H2 sing N N 41 1MA N3 C4 sing N N 42 A OP3 P sing N N 43 A OP3 HOP3 sing N N 44 A P OP1 doub N N 45 A P OP2 sing N N 46 A P "O5'" sing N N 47 A OP2 HOP2 sing N N 48 A "O5'" "C5'" sing N N 49 A "C5'" "C4'" sing N N 50 A "C5'" "H5'" sing N N 51 A "C5'" "H5''" sing N N 52 A "C4'" "O4'" sing N N 53 A "C4'" "C3'" sing N N 54 A "C4'" "H4'" sing N N 55 A "O4'" "C1'" sing N N 56 A "C3'" "O3'" sing N N 57 A "C3'" "C2'" sing N N 58 A "C3'" "H3'" sing N N 59 A "O3'" "HO3'" sing N N 60 A "C2'" "O2'" sing N N 61 A "C2'" "C1'" sing N N 62 A "C2'" "H2'" sing N N 63 A "O2'" "HO2'" sing N N 64 A "C1'" N9 sing N N 65 A "C1'" "H1'" sing N N 66 A N9 C8 sing Y N 67 A N9 C4 sing Y N 68 A C8 N7 doub Y N 69 A C8 H8 sing N N 70 A N7 C5 sing Y N 71 A C5 C6 sing Y N 72 A C5 C4 doub Y N 73 A C6 N6 sing N N 74 A C6 N1 doub Y N 75 A N6 H61 sing N N 76 A N6 H62 sing N N 77 A N1 C2 sing Y N 78 A C2 N3 doub Y N 79 A C2 H2 sing N N 80 A N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 GUN N9 C8 sing Y N 158 GUN N9 C4 sing Y N 159 GUN N9 HN9 sing N N 160 GUN C8 N7 doub Y N 161 GUN C8 H8 sing N N 162 GUN N7 C5 sing Y N 163 GUN C5 C6 sing N N 164 GUN C5 C4 doub Y N 165 GUN C6 O6 doub N N 166 GUN C6 N1 sing N N 167 GUN N1 C2 sing N N 168 GUN N1 HN1 sing N N 169 GUN C2 N2 sing N N 170 GUN C2 N3 doub N N 171 GUN N2 HN21 sing N N 172 GUN N2 HN22 sing N N 173 GUN N3 C4 sing N N 174 HOH O H1 sing N N 175 HOH O H2 sing N N 176 U OP3 P sing N N 177 U OP3 HOP3 sing N N 178 U P OP1 doub N N 179 U P OP2 sing N N 180 U P "O5'" sing N N 181 U OP2 HOP2 sing N N 182 U "O5'" "C5'" sing N N 183 U "C5'" "C4'" sing N N 184 U "C5'" "H5'" sing N N 185 U "C5'" "H5''" sing N N 186 U "C4'" "O4'" sing N N 187 U "C4'" "C3'" sing N N 188 U "C4'" "H4'" sing N N 189 U "O4'" "C1'" sing N N 190 U "C3'" "O3'" sing N N 191 U "C3'" "C2'" sing N N 192 U "C3'" "H3'" sing N N 193 U "O3'" "HO3'" sing N N 194 U "C2'" "O2'" sing N N 195 U "C2'" "C1'" sing N N 196 U "C2'" "H2'" sing N N 197 U "O2'" "HO2'" sing N N 198 U "C1'" N1 sing N N 199 U "C1'" "H1'" sing N N 200 U N1 C2 sing N N 201 U N1 C6 sing N N 202 U C2 O2 doub N N 203 U C2 N3 sing N N 204 U N3 C4 sing N N 205 U N3 H3 sing N N 206 U C4 O4 doub N N 207 U C4 C5 sing N N 208 U C5 C6 doub N N 209 U C5 H5 sing N N 210 U C6 H6 sing N N 211 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7V9E 'double helix' 7V9E 'a-form double helix' 7V9E 'parallel strands' 7V9E 'hairpin loop' 7V9E tetraloop 7V9E 'bulge loop' 7V9E 'mismatched base pair' 7V9E 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 67 1_555 -0.307 -0.036 -0.026 1.775 -12.511 -4.911 1 A_C2:G68_A A 2 ? A 68 ? 19 1 1 A G 2 1_555 A C 66 1_555 -0.295 -0.165 0.026 -1.365 -7.796 0.534 2 A_G3:C67_A A 3 ? A 67 ? 19 1 1 A G 3 1_555 A C 65 1_555 -0.285 -0.126 -0.146 -3.096 -8.107 -0.945 3 A_G4:C66_A A 4 ? A 66 ? 19 1 1 A G 4 1_555 A C 64 1_555 0.044 -0.070 -0.262 -9.601 -12.102 2.615 4 A_G5:C65_A A 5 ? A 65 ? 19 1 1 A C 5 1_555 A G 63 1_555 0.719 0.030 0.159 -6.872 -9.029 0.278 5 A_C6:G64_A A 6 ? A 64 ? 19 1 1 A U 6 1_555 A A 36 1_555 4.467 -2.378 0.031 -9.708 9.025 -101.440 6 A_U7:A37_A A 7 ? A 37 ? 24 4 1 A C 10 1_555 A G 40 1_555 0.043 -0.078 -0.041 -3.979 -7.181 -2.167 7 A_C11:G41_A A 11 ? A 41 ? 19 1 1 A G 11 1_555 A C 37 1_555 0.100 -0.017 -0.836 -17.599 -10.964 2.207 8 A_G12:C38_A A 12 ? A 38 ? 19 1 1 A C 14 1_555 A A 33 1_555 -1.938 0.575 -0.411 23.377 -17.222 -7.456 9 A_C15:A34_A A 15 ? A 34 ? ? ? 1 A C 15 1_555 A G 32 1_555 0.340 -0.043 -0.302 17.891 -12.514 -2.660 10 A_C16:G33_A A 16 ? A 33 ? 19 1 1 A C 16 1_555 A G 31 1_555 -0.043 -0.178 -0.307 7.957 -12.133 1.089 11 A_C17:G32_A A 17 ? A 32 ? 19 1 1 A C 17 1_555 A G 30 1_555 -0.115 -0.018 0.022 -3.782 -10.467 0.680 12 A_C18:G31_A A 18 ? A 31 ? 19 1 1 A C 18 1_555 A G 29 1_555 0.308 -0.262 0.099 -5.810 -8.382 -3.089 13 A_C19:G30_A A 19 ? A 30 ? 19 1 1 A G 19 1_555 A C 28 1_555 0.048 0.043 0.121 -3.856 -9.727 2.103 14 A_G20:C29_A A 20 ? A 29 ? 19 1 1 A A 20 1_555 A U 27 1_555 0.157 -0.084 -0.021 0.677 -10.274 -4.459 15 A_A21:U28_A A 21 ? A 28 ? 20 1 1 A G 21 1_555 A C 26 1_555 -0.030 -0.105 0.031 -3.272 -15.635 0.453 16 A_G22:C27_A A 22 ? A 27 ? 19 1 1 A U 22 1_555 A G 25 1_555 1.428 -4.815 -0.063 -9.700 -1.419 -105.010 17 A_U23:G26_A A 23 ? A 26 ? ? 6 1 A A 45 1_555 A A 39 1_555 -2.636 3.904 -0.737 27.430 5.627 92.910 18 A_A46:A40_A A 46 ? A 40 ? ? 6 1 A C 46 1_555 A G 61 1_555 0.538 0.090 0.008 6.213 -22.516 -3.949 19 A_C47:G62_A A 47 ? A 62 ? 19 1 1 A A 47 1_555 A U 60 1_555 0.149 -0.083 0.544 -0.939 -15.814 0.920 20 A_A48:U61_A A 48 ? A 61 ? 20 1 1 A G 48 1_555 A C 59 1_555 -0.256 -0.104 0.183 -2.565 -19.606 -0.820 21 A_G49:C60_A A 49 ? A 60 ? 19 1 1 A U 49 1_555 A A 58 1_555 0.086 -0.216 0.190 -4.905 -17.807 -0.623 22 A_U50:A59_A A 50 ? A 59 ? 20 1 1 A A 50 1_555 A U 57 1_555 -0.077 -0.032 0.399 -1.763 -13.861 3.799 23 A_A51:U58_A A 51 ? A 58 ? 20 1 1 A U 51 1_555 A A 56 1_555 0.424 0.211 0.547 5.031 -6.085 -2.262 24 A_U52:A57_A A 52 ? A 57 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 67 1_555 A G 2 1_555 A C 66 1_555 0.131 -1.865 3.202 -2.999 9.670 28.513 -5.316 -0.791 2.428 18.896 5.860 30.222 1 AA_C2G3:C67G68_AA A 2 ? A 68 ? A 3 ? A 67 ? 1 A G 2 1_555 A C 66 1_555 A G 3 1_555 A C 65 1_555 -0.363 -1.737 3.228 -0.495 10.981 30.834 -4.797 0.569 2.485 19.878 0.895 32.690 2 AA_G3G4:C66C67_AA A 3 ? A 67 ? A 4 ? A 66 ? 1 A G 3 1_555 A C 65 1_555 A G 4 1_555 A C 64 1_555 0.689 -1.872 3.398 1.818 11.859 31.667 -5.032 -0.906 2.585 20.821 -3.191 33.809 3 AA_G4G5:C65C66_AA A 4 ? A 66 ? A 5 ? A 65 ? 1 A G 4 1_555 A C 64 1_555 A C 5 1_555 A G 63 1_555 -0.044 -1.741 3.272 -1.131 7.670 34.227 -3.976 -0.087 2.828 12.829 1.891 35.068 4 AA_G5C6:G64C65_AA A 5 ? A 65 ? A 6 ? A 64 ? 1 A C 5 1_555 A G 63 1_555 A U 6 1_555 A A 36 1_555 -3.073 -2.047 3.228 9.503 2.516 78.422 -1.674 2.659 2.845 1.983 -7.489 78.937 5 AA_C6U7:A37G64_AA A 6 ? A 64 ? A 7 ? A 37 ? 1 A C 10 1_555 A G 40 1_555 A G 11 1_555 A C 37 1_555 -0.292 -1.625 3.694 8.444 13.110 24.771 -6.080 2.419 2.341 27.368 -17.627 29.205 6 AA_C11G12:C38G41_AA A 11 ? A 41 ? A 12 ? A 38 ? 1 A C 14 1_555 A A 33 1_555 A C 15 1_555 A G 32 1_555 0.175 -1.545 3.445 -5.810 4.264 41.303 -2.618 -0.868 3.225 5.990 8.162 41.899 7 AA_C15C16:G33A34_AA A 15 ? A 34 ? A 16 ? A 33 ? 1 A C 15 1_555 A G 32 1_555 A C 16 1_555 A G 31 1_555 -0.337 -1.999 3.652 -1.524 6.678 30.473 -5.053 0.321 3.165 12.507 2.854 31.215 8 AA_C16C17:G32G33_AA A 16 ? A 33 ? A 17 ? A 32 ? 1 A C 16 1_555 A G 31 1_555 A C 17 1_555 A G 30 1_555 -0.499 -2.243 3.576 -3.294 6.007 29.046 -5.651 0.259 3.097 11.772 6.454 29.826 9 AA_C17C18:G31G32_AA A 17 ? A 32 ? A 18 ? A 31 ? 1 A C 17 1_555 A G 30 1_555 A C 18 1_555 A G 29 1_555 -0.616 -1.398 3.244 0.074 10.400 35.458 -3.523 0.983 2.739 16.640 -0.118 36.905 10 AA_C18C19:G30G31_AA A 18 ? A 31 ? A 19 ? A 30 ? 1 A C 18 1_555 A G 29 1_555 A G 19 1_555 A C 28 1_555 1.079 -1.545 3.069 2.083 10.031 30.208 -4.417 -1.633 2.507 18.588 -3.860 31.860 11 AA_C19G20:C29G30_AA A 19 ? A 30 ? A 20 ? A 29 ? 1 A G 19 1_555 A C 28 1_555 A A 20 1_555 A U 27 1_555 -0.500 -1.503 3.263 0.952 1.670 33.399 -2.883 1.024 3.171 2.903 -1.655 33.453 12 AA_G20A21:U28C29_AA A 20 ? A 29 ? A 21 ? A 28 ? 1 A A 20 1_555 A U 27 1_555 A G 21 1_555 A C 26 1_555 0.717 -1.592 3.395 0.863 6.454 34.490 -3.606 -1.061 3.073 10.765 -1.440 35.081 13 AA_A21G22:C27U28_AA A 21 ? A 28 ? A 22 ? A 27 ? 1 A G 21 1_555 A C 26 1_555 A U 22 1_555 A G 25 1_555 -1.463 -0.514 3.483 1.435 1.293 94.086 -0.376 1.027 3.460 0.883 -0.980 94.101 14 AA_G22U23:G26C27_AA A 22 ? A 27 ? A 23 ? A 26 ? 1 A A 45 1_555 A A 39 1_555 A C 46 1_555 A G 61 1_555 1.914 -0.054 3.050 0.562 -0.495 90.852 -0.029 -1.333 3.059 -0.347 -0.394 90.854 15 AA_A46C47:G62A40_AA A 46 ? A 40 ? A 47 ? A 62 ? 1 A C 46 1_555 A G 61 1_555 A A 47 1_555 A U 60 1_555 0.135 -1.420 3.286 -4.008 9.313 31.481 -3.985 -0.877 2.729 16.633 7.158 33.034 16 AA_C47A48:U61G62_AA A 47 ? A 62 ? A 48 ? A 61 ? 1 A A 47 1_555 A U 60 1_555 A G 48 1_555 A C 59 1_555 -0.278 -1.373 3.217 1.490 8.184 32.213 -3.676 0.717 2.779 14.451 -2.632 33.242 17 AA_A48G49:C60U61_AA A 48 ? A 61 ? A 49 ? A 60 ? 1 A G 48 1_555 A C 59 1_555 A U 49 1_555 A A 58 1_555 -0.262 -1.263 3.274 -1.135 7.152 34.353 -3.130 0.271 2.967 11.945 1.896 35.085 18 AA_G49U50:A59C60_AA A 49 ? A 60 ? A 50 ? A 59 ? 1 A U 49 1_555 A A 58 1_555 A A 50 1_555 A U 57 1_555 0.640 -1.217 3.003 -0.953 10.333 33.607 -3.349 -1.184 2.513 17.364 1.601 35.129 19 AA_U50A51:U58A59_AA A 50 ? A 59 ? A 51 ? A 58 ? 1 A A 50 1_555 A U 57 1_555 A U 51 1_555 A A 56 1_555 0.120 -1.238 3.203 -0.913 4.753 33.712 -2.835 -0.343 3.002 8.144 1.565 34.048 20 AA_A51U52:A57U58_AA A 51 ? A 58 ? A 52 ? A 57 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education (MoE, China)' 'United Kingdom' ? 1 'Cancer Research UK' 'United Kingdom' A18604 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 GUN ? ? GUN ? ? 'SUBJECT OF INVESTIGATION' ? 2 1MA ? ? 1MA ? ? 'SUBJECT OF INVESTIGATION' ? # _space_group.name_H-M_alt 'P 2 2 21' _space_group.name_Hall 'P 2c 2' _space_group.IT_number 17 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 7V9E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019849 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019045 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010006 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BA ? ? 46.69444 9.00985 ? ? 2.07616 47.04031 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_