HEADER DNA BINDING PROTEIN/DNA 25-AUG-21 7V9G TITLE NATIVE BEN4 DOMAIN OF PROTEIN BEND3 WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BEN DOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, D, G, J; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)- COMPND 7 3'); COMPND 8 CHAIN: B, E, H, K; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)- COMPND 12 3'); COMPND 13 CHAIN: C, F, I, L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: BEND3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,Y.ZHANG,Q.YOU,C.HUANG,T.ZHANG,M.WANG,T.ZHANG,X.YANG,J.XIONG, AUTHOR 2 Y.LI,C.P.LIU,Z.ZHANG,R.M.XU,B.ZHU REVDAT 3 16-MAR-22 7V9G 1 JRNL REVDAT 2 23-FEB-22 7V9G 1 JRNL REVDAT 1 16-FEB-22 7V9G 0 JRNL AUTH J.ZHANG,Y.ZHANG,Q.YOU,C.HUANG,T.ZHANG,M.WANG,T.ZHANG,X.YANG, JRNL AUTH 2 J.XIONG,Y.LI,C.P.LIU,Z.ZHANG,R.M.XU,B.ZHU JRNL TITL HIGHLY ENRICHED BEND3 PREVENTS THE PREMATURE ACTIVATION OF JRNL TITL 2 BIVALENT GENES DURING DIFFERENTIATION. JRNL REF SCIENCE V. 375 1053 2022 JRNL REFN ESSN 1095-9203 JRNL PMID 35143257 JRNL DOI 10.1126/SCIENCE.ABM0730 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7800 - 6.9900 0.99 2919 135 0.1896 0.2351 REMARK 3 2 6.9900 - 5.5500 1.00 2781 149 0.2452 0.2724 REMARK 3 3 5.5500 - 4.8500 1.00 2741 148 0.2207 0.2506 REMARK 3 4 4.8500 - 4.4100 1.00 2701 169 0.2240 0.2382 REMARK 3 5 4.4100 - 4.0900 1.00 2703 154 0.2243 0.2813 REMARK 3 6 4.0900 - 3.8500 1.00 2692 130 0.2708 0.3026 REMARK 3 7 3.8500 - 3.6600 1.00 2684 149 0.3069 0.3268 REMARK 3 8 3.6600 - 3.5000 0.99 2639 155 0.3451 0.3627 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 715 THROUGH 810) REMARK 3 SELECTION : (CHAIN D AND RESID 715 THROUGH 810) REMARK 3 ATOM PAIRS NUMBER : 1975 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 715 THROUGH 810) REMARK 3 SELECTION : (CHAIN G AND RESID 715 THROUGH 810) REMARK 3 ATOM PAIRS NUMBER : 1975 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 715 THROUGH 810) REMARK 3 SELECTION : (CHAIN J AND RESID 715 THROUGH 810) REMARK 3 ATOM PAIRS NUMBER : 1975 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 624 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 624 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN K REMARK 3 ATOM PAIRS NUMBER : 624 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 624 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN I REMARK 3 ATOM PAIRS NUMBER : 624 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN L REMARK 3 ATOM PAIRS NUMBER : 624 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7V9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300024330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97884 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23049 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE/CITRIC ACID PH REMARK 280 4.0, 200 MM SODIUM CITRATE TRIBASIC, AND 17% PEG 3350., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.84933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.42467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 100.84933 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.42467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.84933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 50.42467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 100.84933 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.42467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 817 REMARK 465 LYS A 818 REMARK 465 LYS A 819 REMARK 465 ALA A 820 REMARK 465 LYS A 821 REMARK 465 LYS A 822 REMARK 465 VAL A 823 REMARK 465 GLU A 824 REMARK 465 LYS A 825 REMARK 465 VAL D 712 REMARK 465 PRO D 713 REMARK 465 VAL G 712 REMARK 465 PRO G 713 REMARK 465 SER G 714 REMARK 465 ALA G 820 REMARK 465 LYS G 821 REMARK 465 LYS G 822 REMARK 465 VAL G 823 REMARK 465 GLU G 824 REMARK 465 LYS G 825 REMARK 465 ARG J 811 REMARK 465 LYS J 812 REMARK 465 LYS J 813 REMARK 465 CYS J 814 REMARK 465 ASP J 815 REMARK 465 ILE J 816 REMARK 465 LEU J 817 REMARK 465 LYS J 818 REMARK 465 LYS J 819 REMARK 465 ALA J 820 REMARK 465 LYS J 821 REMARK 465 LYS J 822 REMARK 465 VAL J 823 REMARK 465 GLU J 824 REMARK 465 LYS J 825 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG E 15 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT H 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 745 60.20 -119.10 REMARK 500 ASN A 765 14.70 59.24 REMARK 500 TYR A 785 77.72 -119.45 REMARK 500 MET A 790 21.46 -77.71 REMARK 500 TYR D 716 46.47 -76.01 REMARK 500 PHE D 745 60.24 -118.96 REMARK 500 ASN D 765 15.03 59.45 REMARK 500 PHE G 745 62.27 -118.57 REMARK 500 ASN G 765 14.44 58.53 REMARK 500 PHE J 745 61.70 -119.19 REMARK 500 ASN J 765 14.01 58.77 REMARK 500 ASP J 770 109.56 -47.23 REMARK 500 TYR J 785 69.32 -115.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7V9G A 712 825 UNP Q6PAL0 BEND3_MOUSE 712 825 DBREF 7V9G B 1 16 PDB 7V9G 7V9G 1 16 DBREF 7V9G C 1 16 PDB 7V9G 7V9G 1 16 DBREF 7V9G D 712 825 UNP Q6PAL0 BEND3_MOUSE 712 825 DBREF 7V9G E 1 16 PDB 7V9G 7V9G 1 16 DBREF 7V9G F 1 16 PDB 7V9G 7V9G 1 16 DBREF 7V9G G 712 825 UNP Q6PAL0 BEND3_MOUSE 712 825 DBREF 7V9G H 1 16 PDB 7V9G 7V9G 1 16 DBREF 7V9G I 1 16 PDB 7V9G 7V9G 1 16 DBREF 7V9G J 712 825 UNP Q6PAL0 BEND3_MOUSE 712 825 DBREF 7V9G K 1 16 PDB 7V9G 7V9G 1 16 DBREF 7V9G L 1 16 PDB 7V9G 7V9G 1 16 SEQRES 1 A 114 VAL PRO SER PRO TYR LEU LEU SER ASP LYS GLU VAL ARG SEQRES 2 A 114 GLU ILE VAL GLN GLN SER LEU SER VAL GLY ASN PHE ALA SEQRES 3 A 114 ALA ARG LEU LEU VAL ARG LEU PHE PRO GLU LEU PHE THR SEQRES 4 A 114 THR GLU ASN LEU ARG LEU GLN TYR ASN HIS SER GLY ALA SEQRES 5 A 114 CYS ASN LYS LYS GLN LEU ASP PRO THR ARG LEU ARG LEU SEQRES 6 A 114 ILE ARG HIS TYR VAL GLU ALA VAL TYR PRO VAL GLU LYS SEQRES 7 A 114 MET GLU GLU VAL TRP HIS TYR GLU CYS ILE PRO SER ILE SEQRES 8 A 114 ASP GLU ARG CYS ARG ARG PRO ASN ARG LYS LYS CYS ASP SEQRES 9 A 114 ILE LEU LYS LYS ALA LYS LYS VAL GLU LYS SEQRES 1 B 16 DT DG DG DC DC DC DC DA DC DG DC DG DG SEQRES 2 B 16 DT DG DC SEQRES 1 C 16 DG DC DA DC DC DG DC DG DT DG DG DG DG SEQRES 2 C 16 DC DC DA SEQRES 1 D 114 VAL PRO SER PRO TYR LEU LEU SER ASP LYS GLU VAL ARG SEQRES 2 D 114 GLU ILE VAL GLN GLN SER LEU SER VAL GLY ASN PHE ALA SEQRES 3 D 114 ALA ARG LEU LEU VAL ARG LEU PHE PRO GLU LEU PHE THR SEQRES 4 D 114 THR GLU ASN LEU ARG LEU GLN TYR ASN HIS SER GLY ALA SEQRES 5 D 114 CYS ASN LYS LYS GLN LEU ASP PRO THR ARG LEU ARG LEU SEQRES 6 D 114 ILE ARG HIS TYR VAL GLU ALA VAL TYR PRO VAL GLU LYS SEQRES 7 D 114 MET GLU GLU VAL TRP HIS TYR GLU CYS ILE PRO SER ILE SEQRES 8 D 114 ASP GLU ARG CYS ARG ARG PRO ASN ARG LYS LYS CYS ASP SEQRES 9 D 114 ILE LEU LYS LYS ALA LYS LYS VAL GLU LYS SEQRES 1 E 16 DT DG DG DC DC DC DC DA DC DG DC DG DG SEQRES 2 E 16 DT DG DC SEQRES 1 F 16 DG DC DA DC DC DG DC DG DT DG DG DG DG SEQRES 2 F 16 DC DC DA SEQRES 1 G 114 VAL PRO SER PRO TYR LEU LEU SER ASP LYS GLU VAL ARG SEQRES 2 G 114 GLU ILE VAL GLN GLN SER LEU SER VAL GLY ASN PHE ALA SEQRES 3 G 114 ALA ARG LEU LEU VAL ARG LEU PHE PRO GLU LEU PHE THR SEQRES 4 G 114 THR GLU ASN LEU ARG LEU GLN TYR ASN HIS SER GLY ALA SEQRES 5 G 114 CYS ASN LYS LYS GLN LEU ASP PRO THR ARG LEU ARG LEU SEQRES 6 G 114 ILE ARG HIS TYR VAL GLU ALA VAL TYR PRO VAL GLU LYS SEQRES 7 G 114 MET GLU GLU VAL TRP HIS TYR GLU CYS ILE PRO SER ILE SEQRES 8 G 114 ASP GLU ARG CYS ARG ARG PRO ASN ARG LYS LYS CYS ASP SEQRES 9 G 114 ILE LEU LYS LYS ALA LYS LYS VAL GLU LYS SEQRES 1 H 16 DT DG DG DC DC DC DC DA DC DG DC DG DG SEQRES 2 H 16 DT DG DC SEQRES 1 I 16 DG DC DA DC DC DG DC DG DT DG DG DG DG SEQRES 2 I 16 DC DC DA SEQRES 1 J 114 VAL PRO SER PRO TYR LEU LEU SER ASP LYS GLU VAL ARG SEQRES 2 J 114 GLU ILE VAL GLN GLN SER LEU SER VAL GLY ASN PHE ALA SEQRES 3 J 114 ALA ARG LEU LEU VAL ARG LEU PHE PRO GLU LEU PHE THR SEQRES 4 J 114 THR GLU ASN LEU ARG LEU GLN TYR ASN HIS SER GLY ALA SEQRES 5 J 114 CYS ASN LYS LYS GLN LEU ASP PRO THR ARG LEU ARG LEU SEQRES 6 J 114 ILE ARG HIS TYR VAL GLU ALA VAL TYR PRO VAL GLU LYS SEQRES 7 J 114 MET GLU GLU VAL TRP HIS TYR GLU CYS ILE PRO SER ILE SEQRES 8 J 114 ASP GLU ARG CYS ARG ARG PRO ASN ARG LYS LYS CYS ASP SEQRES 9 J 114 ILE LEU LYS LYS ALA LYS LYS VAL GLU LYS SEQRES 1 K 16 DT DG DG DC DC DC DC DA DC DG DC DG DG SEQRES 2 K 16 DT DG DC SEQRES 1 L 16 DG DC DA DC DC DG DC DG DT DG DG DG DG SEQRES 2 L 16 DC DC DA HELIX 1 AA1 SER A 719 SER A 730 1 12 HELIX 2 AA2 SER A 732 PHE A 745 1 14 HELIX 3 AA3 PRO A 746 THR A 750 5 5 HELIX 4 AA4 ASN A 753 LEU A 756 5 4 HELIX 5 AA5 ASP A 770 TYR A 785 1 16 HELIX 6 AA6 GLU A 792 GLU A 797 1 6 HELIX 7 AA7 GLU A 797 ARG A 808 1 12 HELIX 8 AA8 SER D 719 SER D 730 1 12 HELIX 9 AA9 SER D 732 PHE D 745 1 14 HELIX 10 AB1 PRO D 746 THR D 750 5 5 HELIX 11 AB2 ASN D 753 LEU D 756 5 4 HELIX 12 AB3 ASP D 770 VAL D 784 1 15 HELIX 13 AB4 VAL D 784 GLU D 797 1 14 HELIX 14 AB5 GLU D 797 ARG D 808 1 12 HELIX 15 AB6 LYS D 812 LYS D 825 1 14 HELIX 16 AB7 SER G 719 SER G 730 1 12 HELIX 17 AB8 SER G 732 PHE G 745 1 14 HELIX 18 AB9 PRO G 746 THR G 750 5 5 HELIX 19 AC1 ASN G 753 LEU G 756 5 4 HELIX 20 AC2 ASP G 770 VAL G 784 1 15 HELIX 21 AC3 VAL G 784 GLU G 797 1 14 HELIX 22 AC4 GLU G 797 ARG G 808 1 12 HELIX 23 AC5 LYS G 812 LYS G 819 1 8 HELIX 24 AC6 SER J 719 SER J 730 1 12 HELIX 25 AC7 SER J 732 PHE J 745 1 14 HELIX 26 AC8 PRO J 746 THR J 750 5 5 HELIX 27 AC9 ASN J 753 LEU J 756 5 4 HELIX 28 AD1 ASP J 770 TYR J 785 1 16 HELIX 29 AD2 GLU J 792 GLU J 797 1 6 HELIX 30 AD3 GLU J 797 ARG J 808 1 12 SHEET 1 AA1 2 TYR A 758 ASN A 759 0 SHEET 2 AA1 2 LYS A 767 GLN A 768 1 O LYS A 767 N ASN A 759 SHEET 1 AA2 2 TYR D 758 ASN D 759 0 SHEET 2 AA2 2 LYS D 767 GLN D 768 1 O LYS D 767 N ASN D 759 SHEET 1 AA3 2 TYR G 758 ASN G 759 0 SHEET 2 AA3 2 LYS G 767 GLN G 768 1 O LYS G 767 N ASN G 759 SHEET 1 AA4 2 TYR J 758 ASN J 759 0 SHEET 2 AA4 2 LYS J 767 GLN J 768 1 O LYS J 767 N ASN J 759 CRYST1 200.484 200.484 151.274 90.00 90.00 120.00 P 62 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004988 0.002880 0.000000 0.00000 SCALE2 0.000000 0.005760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006611 0.00000