HEADER TRANSFERASE/RNA BINDING PROTEIN/DNA/RNA 27-AUG-21 7V9X TITLE CRYO-EM STRUCTURE OF E.COLI RETRON-EC86 IN COMPLEX WITH ITS EFFECTOR TITLE 2 AT 2.8 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED DNA POLYMERASE FROM RETRON EC86; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EC86-RT,REVERSE TRANSCRIPTASE; COMPND 5 EC: 2.7.7.49; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RETRON ST85 FAMILY EFFECTOR PROTEIN; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (105-MER); COMPND 13 CHAIN: D, G; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: RNA (81-MER); COMPND 17 CHAIN: E, H; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: RNA (14-MER); COMPND 21 CHAIN: F, I; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 GENE: HJV81_000169; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 MOL_ID: 4; SOURCE 18 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 19 ORGANISM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 MOL_ID: 5; SOURCE 23 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 24 ORGANISM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 26 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS REVERSE TRANSCRIPTASE, RNA BINDING PROTEIN, TRANSFERASE-RNA BINDING KEYWDS 2 PROTEIN-DNA-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.J.WANG,Z.Y.GUAN,T.T.ZOU REVDAT 1 31-AUG-22 7V9X 0 JRNL AUTH T.J.WANG,Z.Y.GUAN,T.T.ZOU JRNL TITL STRUCTURAL INSIGHT INTO ANTI-PHAGE RETRON-EC86 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.820 REMARK 3 NUMBER OF PARTICLES : 137409 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7V9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024362. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RETRON-EC86 (RT-MSDNA-RNA) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.40 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5368.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F, B, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 317 REMARK 465 ALA A 318 REMARK 465 LYS A 319 REMARK 465 THR A 320 REMARK 465 LEU A 321 REMARK 465 GLU A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 ASN C 27 REMARK 465 ILE C 28 REMARK 465 LYS C 29 REMARK 465 ILE C 30 REMARK 465 THR C 31 REMARK 465 ILE C 32 REMARK 465 PHE C 33 REMARK 465 LEU C 34 REMARK 465 CYS C 35 REMARK 465 GLY C 36 REMARK 465 GLY C 37 REMARK 465 ASP C 38 REMARK 465 VAL C 39 REMARK 465 ALA C 40 REMARK 465 ASN C 41 REMARK 465 HIS C 42 REMARK 465 GLN C 43 REMARK 465 SER C 44 REMARK 465 TRP C 45 REMARK 465 ARG C 46 REMARK 465 HIS C 47 REMARK 465 GLN C 48 REMARK 465 LEU C 49 REMARK 465 SER C 50 REMARK 465 GLN C 51 REMARK 465 PHE C 52 REMARK 465 LEU C 53 REMARK 465 ALA C 54 REMARK 465 LYS C 55 REMARK 465 PHE C 56 REMARK 465 SER C 57 REMARK 465 ASP C 58 REMARK 465 VAL C 59 REMARK 465 ASP C 60 REMARK 465 ILE C 61 REMARK 465 PHE C 62 REMARK 465 TYR C 63 REMARK 465 PRO C 64 REMARK 465 GLU C 65 REMARK 465 ASP C 66 REMARK 465 LEU C 67 REMARK 465 PHE C 68 REMARK 465 ASP C 69 REMARK 465 ASP C 70 REMARK 465 LEU C 71 REMARK 465 LEU C 72 REMARK 465 ALA C 73 REMARK 465 GLY C 74 REMARK 465 GLN C 75 REMARK 465 GLY C 76 REMARK 465 GLN C 77 REMARK 465 HIS C 78 REMARK 465 SER C 79 REMARK 465 LEU C 80 REMARK 465 LEU C 81 REMARK 465 SER C 82 REMARK 465 LEU C 83 REMARK 465 GLU C 84 REMARK 465 ASN C 85 REMARK 465 ILE C 86 REMARK 465 LEU C 87 REMARK 465 ALA C 88 REMARK 465 GLU C 89 REMARK 465 ALA C 90 REMARK 465 VAL C 91 REMARK 465 ASP C 92 REMARK 465 VAL C 93 REMARK 465 ILE C 94 REMARK 465 ILE C 95 REMARK 465 LEU C 96 REMARK 465 PHE C 97 REMARK 465 PRO C 98 REMARK 465 GLU C 99 REMARK 465 SER C 100 REMARK 465 PRO C 101 REMARK 465 GLY C 102 REMARK 465 SER C 103 REMARK 465 PHE C 104 REMARK 465 THR C 105 REMARK 465 GLU C 106 REMARK 465 LEU C 107 REMARK 465 GLY C 108 REMARK 465 ALA C 109 REMARK 465 PHE C 110 REMARK 465 SER C 111 REMARK 465 ASN C 112 REMARK 465 ASN C 113 REMARK 465 GLU C 114 REMARK 465 ASN C 115 REMARK 465 LEU C 116 REMARK 465 ARG C 117 REMARK 465 ARG C 118 REMARK 465 LYS C 119 REMARK 465 LEU C 120 REMARK 465 ILE C 121 REMARK 465 CYS C 122 REMARK 465 ILE C 123 REMARK 465 GLN C 124 REMARK 465 ASP C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 PHE C 128 REMARK 465 LYS C 129 REMARK 465 SER C 130 REMARK 465 LYS C 131 REMARK 465 ARG C 132 REMARK 465 SER C 133 REMARK 465 PHE C 134 REMARK 465 ILE C 135 REMARK 465 ASN C 136 REMARK 465 TYR C 137 REMARK 465 GLY C 138 REMARK 465 PRO C 139 REMARK 465 VAL C 140 REMARK 465 ARG C 141 REMARK 465 LEU C 142 REMARK 465 LEU C 143 REMARK 465 ARG C 144 REMARK 465 LYS C 145 REMARK 465 PHE C 146 REMARK 465 ASN C 147 REMARK 465 SER C 148 REMARK 465 LYS C 149 REMARK 465 SER C 150 REMARK 465 VAL C 151 REMARK 465 LEU C 152 REMARK 465 ARG C 153 REMARK 465 CYS C 154 REMARK 465 SER C 155 REMARK 465 SER C 156 REMARK 465 ASN C 157 REMARK 465 GLU C 158 REMARK 465 LEU C 159 REMARK 465 LYS C 160 REMARK 465 GLU C 161 REMARK 465 MET C 162 REMARK 465 CYS C 163 REMARK 465 ASP C 164 REMARK 465 SER C 165 REMARK 465 SER C 166 REMARK 465 ILE C 167 REMARK 465 ASP C 168 REMARK 465 VAL C 169 REMARK 465 ALA C 170 REMARK 465 ARG C 171 REMARK 465 LYS C 172 REMARK 465 LEU C 173 REMARK 465 ARG C 174 REMARK 465 LEU C 175 REMARK 465 TYR C 176 REMARK 465 LYS C 177 REMARK 465 LYS C 178 REMARK 465 LEU C 179 REMARK 465 MET C 180 REMARK 465 ALA C 181 REMARK 465 SER C 182 REMARK 465 ILE C 183 REMARK 465 LYS C 184 REMARK 465 LYS C 185 REMARK 465 VAL C 186 REMARK 465 ARG C 187 REMARK 465 LYS C 188 REMARK 465 GLU C 189 REMARK 465 ASN C 190 REMARK 465 LYS C 191 REMARK 465 VAL C 192 REMARK 465 SER C 193 REMARK 465 LYS C 194 REMARK 465 ASP C 195 REMARK 465 ILE C 196 REMARK 465 GLY C 197 REMARK 465 ASN C 198 REMARK 465 GLN C 231 REMARK 465 ASP C 232 REMARK 465 PRO C 307 REMARK 465 DG D -18 REMARK 465 DA D -17 REMARK 465 DA D -16 REMARK 465 DA D -15 REMARK 465 DG D -14 REMARK 465 DT D -13 REMARK 465 DT D -12 REMARK 465 DG D -11 REMARK 465 DC D -10 REMARK 465 DG D -9 REMARK 465 DC D -8 REMARK 465 DA D -7 REMARK 465 DC D -6 REMARK 465 DC D -5 REMARK 465 DC D -4 REMARK 465 DT D -3 REMARK 465 DT D -2 REMARK 465 DA D -1 REMARK 465 DC D 0 REMARK 465 DC D 20 REMARK 465 DT D 21 REMARK 465 DG D 22 REMARK 465 DG D 23 REMARK 465 DT D 24 REMARK 465 DT D 25 REMARK 465 DG D 26 REMARK 465 DG D 27 REMARK 465 DC D 28 REMARK 465 DT D 29 REMARK 465 DC D 30 REMARK 465 DG D 31 REMARK 465 DG D 32 REMARK 465 DA D 33 REMARK 465 DG D 34 REMARK 465 DA D 35 REMARK 465 DG D 36 REMARK 465 DC D 37 REMARK 465 DA D 38 REMARK 465 DT D 39 REMARK 465 DC D 40 REMARK 465 DA D 41 REMARK 465 DG D 42 REMARK 465 DG D 43 REMARK 465 DC D 44 REMARK 465 DG D 45 REMARK 465 DA D 46 REMARK 465 DT D 47 REMARK 465 DG D 48 REMARK 465 DC D 49 REMARK 465 DT D 50 REMARK 465 DC D 51 REMARK 465 DT D 52 REMARK 465 DC D 53 REMARK 465 DC D 54 REMARK 465 DG D 55 REMARK 465 DT D 56 REMARK 465 DT D 57 REMARK 465 DC D 58 REMARK 465 DC D 59 REMARK 465 DA D 60 REMARK 465 DA D 61 REMARK 465 DC D 62 REMARK 465 DA D 63 REMARK 465 DA D 64 REMARK 465 DG D 65 REMARK 465 DA D 86 REMARK 465 U E 2 REMARK 465 G E 3 REMARK 465 C E 4 REMARK 465 G E 5 REMARK 465 C E 6 REMARK 465 A E 7 REMARK 465 U E 23 REMARK 465 U E 24 REMARK 465 A E 25 REMARK 465 U E 26 REMARK 465 C E 27 REMARK 465 A E 28 REMARK 465 U E 29 REMARK 465 U E 30 REMARK 465 A E 31 REMARK 465 A E 32 REMARK 465 G E 33 REMARK 465 G E 34 REMARK 465 U E 35 REMARK 465 C E 36 REMARK 465 A E 37 REMARK 465 A E 38 REMARK 465 U E 82 REMARK 465 U F 8 REMARK 465 G F 9 REMARK 465 C F 10 REMARK 465 G F 11 REMARK 465 C F 12 REMARK 465 A F 13 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 317 REMARK 465 ALA B 318 REMARK 465 LYS B 319 REMARK 465 THR B 320 REMARK 465 LEU B 321 REMARK 465 GLU B 322 REMARK 465 HIS B 323 REMARK 465 HIS B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 DG G -18 REMARK 465 DA G -17 REMARK 465 DA G -16 REMARK 465 DA G -15 REMARK 465 DG G -14 REMARK 465 DT G -13 REMARK 465 DT G -12 REMARK 465 DG G -11 REMARK 465 DC G -10 REMARK 465 DG G -9 REMARK 465 DC G -8 REMARK 465 DA G -7 REMARK 465 DC G -6 REMARK 465 DC G -5 REMARK 465 DC G -4 REMARK 465 DT G -3 REMARK 465 DT G -2 REMARK 465 DA G -1 REMARK 465 DC G 0 REMARK 465 DC G 20 REMARK 465 DT G 21 REMARK 465 DG G 22 REMARK 465 DG G 23 REMARK 465 DT G 24 REMARK 465 DT G 25 REMARK 465 DG G 26 REMARK 465 DG G 27 REMARK 465 DC G 28 REMARK 465 DT G 29 REMARK 465 DC G 30 REMARK 465 DG G 31 REMARK 465 DG G 32 REMARK 465 DA G 33 REMARK 465 DG G 34 REMARK 465 DA G 35 REMARK 465 DG G 36 REMARK 465 DC G 37 REMARK 465 DA G 38 REMARK 465 DT G 39 REMARK 465 DC G 40 REMARK 465 DA G 41 REMARK 465 DG G 42 REMARK 465 DG G 43 REMARK 465 DC G 44 REMARK 465 DG G 45 REMARK 465 DA G 46 REMARK 465 DT G 47 REMARK 465 DG G 48 REMARK 465 DC G 49 REMARK 465 DT G 50 REMARK 465 DC G 51 REMARK 465 DT G 52 REMARK 465 DC G 53 REMARK 465 DC G 54 REMARK 465 DG G 55 REMARK 465 DT G 56 REMARK 465 DT G 57 REMARK 465 DC G 58 REMARK 465 DC G 59 REMARK 465 DA G 60 REMARK 465 DA G 61 REMARK 465 DC G 62 REMARK 465 DA G 63 REMARK 465 DA G 64 REMARK 465 DG G 65 REMARK 465 DA G 86 REMARK 465 U H 2 REMARK 465 G H 3 REMARK 465 C H 4 REMARK 465 G H 5 REMARK 465 C H 6 REMARK 465 A H 7 REMARK 465 U H 23 REMARK 465 U H 24 REMARK 465 A H 25 REMARK 465 U H 26 REMARK 465 C H 27 REMARK 465 A H 28 REMARK 465 U H 29 REMARK 465 U H 30 REMARK 465 A H 31 REMARK 465 A H 32 REMARK 465 G H 33 REMARK 465 G H 34 REMARK 465 U H 35 REMARK 465 C H 36 REMARK 465 A H 37 REMARK 465 A H 38 REMARK 465 U H 82 REMARK 465 U I 8 REMARK 465 G I 9 REMARK 465 C I 10 REMARK 465 G I 11 REMARK 465 C I 12 REMARK 465 A I 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 59 -125.75 56.91 REMARK 500 SER A 69 -167.31 -79.35 REMARK 500 ILE A 83 -59.46 -123.23 REMARK 500 SER A 101 -169.27 -126.73 REMARK 500 ASP A 122 58.53 33.08 REMARK 500 LYS A 156 -56.94 -123.97 REMARK 500 ALA A 196 -108.51 57.52 REMARK 500 LYS A 231 -2.20 66.68 REMARK 500 LYS A 274 -5.10 67.50 REMARK 500 PRO A 314 -177.52 -66.71 REMARK 500 LYS C 294 -2.30 69.51 REMARK 500 GLU B 59 -135.38 38.85 REMARK 500 LYS B 60 66.01 60.87 REMARK 500 ILE B 83 -53.36 -125.02 REMARK 500 TYR B 155 -68.27 -94.73 REMARK 500 LYS B 156 -56.99 -123.63 REMARK 500 ASN B 157 13.17 -141.70 REMARK 500 ALA B 196 -113.78 61.97 REMARK 500 LYS B 274 8.86 56.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-31829 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF E.COLI RETRON-EC86 IN COMPLEX WITH ITS REMARK 900 EFFECTOR AT 2.8 ANGSTROM DBREF 7V9X A 1 320 UNP P23070 RT86_ECOLX 1 320 DBREF1 7V9X C 1 307 UNP A0A7A0NNW9_ECOLX DBREF2 7V9X C A0A7A0NNW9 1 307 DBREF 7V9X D -18 86 GB 341167 M24408.1 547 443 DBREF 7V9X E 2 82 GB 341167 M24408.1 373 453 DBREF 7V9X F 0 13 PDB 7V9X 7V9X 0 13 DBREF 7V9X B 1 320 UNP P23070 RT86_ECOLX 1 320 DBREF 7V9X G -18 86 GB 341167 M24408.1 547 443 DBREF 7V9X H 2 82 GB 341167 M24408.1 373 453 DBREF 7V9X I 0 13 PDB 7V9X 7V9X 0 13 SEQADV 7V9X LEU A 321 UNP P23070 EXPRESSION TAG SEQADV 7V9X GLU A 322 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 323 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 324 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 325 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 326 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 327 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 328 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 329 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS A 330 UNP P23070 EXPRESSION TAG SEQADV 7V9X LEU B 321 UNP P23070 EXPRESSION TAG SEQADV 7V9X GLU B 322 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 323 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 324 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 325 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 326 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 327 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 328 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 329 UNP P23070 EXPRESSION TAG SEQADV 7V9X HIS B 330 UNP P23070 EXPRESSION TAG SEQRES 1 A 330 MET LYS SER ALA GLU TYR LEU ASN THR PHE ARG LEU ARG SEQRES 2 A 330 ASN LEU GLY LEU PRO VAL MET ASN ASN LEU HIS ASP MET SEQRES 3 A 330 SER LYS ALA THR ARG ILE SER VAL GLU THR LEU ARG LEU SEQRES 4 A 330 LEU ILE TYR THR ALA ASP PHE ARG TYR ARG ILE TYR THR SEQRES 5 A 330 VAL GLU LYS LYS GLY PRO GLU LYS ARG MET ARG THR ILE SEQRES 6 A 330 TYR GLN PRO SER ARG GLU LEU LYS ALA LEU GLN GLY TRP SEQRES 7 A 330 VAL LEU ARG ASN ILE LEU ASP LYS LEU SER SER SER PRO SEQRES 8 A 330 PHE SER ILE GLY PHE GLU LYS HIS GLN SER ILE LEU ASN SEQRES 9 A 330 ASN ALA THR PRO HIS ILE GLY ALA ASN PHE ILE LEU ASN SEQRES 10 A 330 ILE ASP LEU GLU ASP PHE PHE PRO SER LEU THR ALA ASN SEQRES 11 A 330 LYS VAL PHE GLY VAL PHE HIS SER LEU GLY TYR ASN ARG SEQRES 12 A 330 LEU ILE SER SER VAL LEU THR LYS ILE CYS CYS TYR LYS SEQRES 13 A 330 ASN LEU LEU PRO GLN GLY ALA PRO SER SER PRO LYS LEU SEQRES 14 A 330 ALA ASN LEU ILE CYS SER LYS LEU ASP TYR ARG ILE GLN SEQRES 15 A 330 GLY TYR ALA GLY SER ARG GLY LEU ILE TYR THR ARG TYR SEQRES 16 A 330 ALA ASP ASP LEU THR LEU SER ALA GLN SER MET LYS LYS SEQRES 17 A 330 VAL VAL LYS ALA ARG ASP PHE LEU PHE SER ILE ILE PRO SEQRES 18 A 330 SER GLU GLY LEU VAL ILE ASN SER LYS LYS THR CYS ILE SEQRES 19 A 330 SER GLY PRO ARG SER GLN ARG LYS VAL THR GLY LEU VAL SEQRES 20 A 330 ILE SER GLN GLU LYS VAL GLY ILE GLY ARG GLU LYS TYR SEQRES 21 A 330 LYS GLU ILE ARG ALA LYS ILE HIS HIS ILE PHE CYS GLY SEQRES 22 A 330 LYS SER SER GLU ILE GLU HIS VAL ARG GLY TRP LEU SER SEQRES 23 A 330 PHE ILE LEU SER VAL ASP SER LYS SER HIS ARG ARG LEU SEQRES 24 A 330 ILE THR TYR ILE SER LYS LEU GLU LYS LYS TYR GLY LYS SEQRES 25 A 330 ASN PRO LEU ASN LYS ALA LYS THR LEU GLU HIS HIS HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS SEQRES 1 C 307 MET ASN LYS LYS PHE THR ASP GLU GLN GLN GLN GLN LEU SEQRES 2 C 307 ILE GLY HIS LEU THR LYS LYS GLY PHE TYR ARG GLY ALA SEQRES 3 C 307 ASN ILE LYS ILE THR ILE PHE LEU CYS GLY GLY ASP VAL SEQRES 4 C 307 ALA ASN HIS GLN SER TRP ARG HIS GLN LEU SER GLN PHE SEQRES 5 C 307 LEU ALA LYS PHE SER ASP VAL ASP ILE PHE TYR PRO GLU SEQRES 6 C 307 ASP LEU PHE ASP ASP LEU LEU ALA GLY GLN GLY GLN HIS SEQRES 7 C 307 SER LEU LEU SER LEU GLU ASN ILE LEU ALA GLU ALA VAL SEQRES 8 C 307 ASP VAL ILE ILE LEU PHE PRO GLU SER PRO GLY SER PHE SEQRES 9 C 307 THR GLU LEU GLY ALA PHE SER ASN ASN GLU ASN LEU ARG SEQRES 10 C 307 ARG LYS LEU ILE CYS ILE GLN ASP ALA LYS PHE LYS SER SEQRES 11 C 307 LYS ARG SER PHE ILE ASN TYR GLY PRO VAL ARG LEU LEU SEQRES 12 C 307 ARG LYS PHE ASN SER LYS SER VAL LEU ARG CYS SER SER SEQRES 13 C 307 ASN GLU LEU LYS GLU MET CYS ASP SER SER ILE ASP VAL SEQRES 14 C 307 ALA ARG LYS LEU ARG LEU TYR LYS LYS LEU MET ALA SER SEQRES 15 C 307 ILE LYS LYS VAL ARG LYS GLU ASN LYS VAL SER LYS ASP SEQRES 16 C 307 ILE GLY ASN ILE LEU TYR ALA GLU ARG PHE LEU LEU PRO SEQRES 17 C 307 CYS ILE TYR LEU LEU ASP SER VAL ASN TYR ARG THR LEU SEQRES 18 C 307 CYS GLU LEU ALA PHE LYS ALA ILE LYS GLN ASP ASP VAL SEQRES 19 C 307 LEU SER LYS ILE ILE VAL ARG SER VAL VAL SER ARG LEU SEQRES 20 C 307 ILE ASN GLU ARG LYS ILE LEU GLN MET THR ASP GLY TYR SEQRES 21 C 307 GLN VAL THR ALA LEU GLY ALA SER TYR VAL ARG SER VAL SEQRES 22 C 307 PHE ASP ARG LYS THR LEU ASP ARG LEU ARG LEU GLU ILE SEQRES 23 C 307 MET ASN PHE GLU ASN ARG ARG LYS SER THR PHE ASN TYR SEQRES 24 C 307 ASP LYS ILE PRO TYR ALA HIS PRO SEQRES 1 D 105 DG DA DA DA DG DT DT DG DC DG DC DA DC SEQRES 2 D 105 DC DC DT DT DA DC DG DT DC DA DG DA DA SEQRES 3 D 105 DA DA DA DA DC DG DG DG DT DT DT DC DC SEQRES 4 D 105 DT DG DG DT DT DG DG DC DT DC DG DG DA SEQRES 5 D 105 DG DA DG DC DA DT DC DA DG DG DC DG DA SEQRES 6 D 105 DT DG DC DT DC DT DC DC DG DT DT DC DC SEQRES 7 D 105 DA DA DC DA DA DG DG DA DA DA DA DC DA SEQRES 8 D 105 DG DA DC DA DG DT DA DA DC DT DC DA DG SEQRES 9 D 105 DA SEQRES 1 E 81 U G C G C A C C C U U A G SEQRES 2 E 81 C G A G A G G U U U A U C SEQRES 3 E 81 A U U A A G G U C A A C C SEQRES 4 E 81 U C U G G A U G U U G U U SEQRES 5 E 81 U C G G C A U C C U G C A SEQRES 6 E 81 U U G A A U C U G A G U U SEQRES 7 E 81 A C U SEQRES 1 F 14 C G U A A G G G U G C G C SEQRES 2 F 14 A SEQRES 1 B 330 MET LYS SER ALA GLU TYR LEU ASN THR PHE ARG LEU ARG SEQRES 2 B 330 ASN LEU GLY LEU PRO VAL MET ASN ASN LEU HIS ASP MET SEQRES 3 B 330 SER LYS ALA THR ARG ILE SER VAL GLU THR LEU ARG LEU SEQRES 4 B 330 LEU ILE TYR THR ALA ASP PHE ARG TYR ARG ILE TYR THR SEQRES 5 B 330 VAL GLU LYS LYS GLY PRO GLU LYS ARG MET ARG THR ILE SEQRES 6 B 330 TYR GLN PRO SER ARG GLU LEU LYS ALA LEU GLN GLY TRP SEQRES 7 B 330 VAL LEU ARG ASN ILE LEU ASP LYS LEU SER SER SER PRO SEQRES 8 B 330 PHE SER ILE GLY PHE GLU LYS HIS GLN SER ILE LEU ASN SEQRES 9 B 330 ASN ALA THR PRO HIS ILE GLY ALA ASN PHE ILE LEU ASN SEQRES 10 B 330 ILE ASP LEU GLU ASP PHE PHE PRO SER LEU THR ALA ASN SEQRES 11 B 330 LYS VAL PHE GLY VAL PHE HIS SER LEU GLY TYR ASN ARG SEQRES 12 B 330 LEU ILE SER SER VAL LEU THR LYS ILE CYS CYS TYR LYS SEQRES 13 B 330 ASN LEU LEU PRO GLN GLY ALA PRO SER SER PRO LYS LEU SEQRES 14 B 330 ALA ASN LEU ILE CYS SER LYS LEU ASP TYR ARG ILE GLN SEQRES 15 B 330 GLY TYR ALA GLY SER ARG GLY LEU ILE TYR THR ARG TYR SEQRES 16 B 330 ALA ASP ASP LEU THR LEU SER ALA GLN SER MET LYS LYS SEQRES 17 B 330 VAL VAL LYS ALA ARG ASP PHE LEU PHE SER ILE ILE PRO SEQRES 18 B 330 SER GLU GLY LEU VAL ILE ASN SER LYS LYS THR CYS ILE SEQRES 19 B 330 SER GLY PRO ARG SER GLN ARG LYS VAL THR GLY LEU VAL SEQRES 20 B 330 ILE SER GLN GLU LYS VAL GLY ILE GLY ARG GLU LYS TYR SEQRES 21 B 330 LYS GLU ILE ARG ALA LYS ILE HIS HIS ILE PHE CYS GLY SEQRES 22 B 330 LYS SER SER GLU ILE GLU HIS VAL ARG GLY TRP LEU SER SEQRES 23 B 330 PHE ILE LEU SER VAL ASP SER LYS SER HIS ARG ARG LEU SEQRES 24 B 330 ILE THR TYR ILE SER LYS LEU GLU LYS LYS TYR GLY LYS SEQRES 25 B 330 ASN PRO LEU ASN LYS ALA LYS THR LEU GLU HIS HIS HIS SEQRES 26 B 330 HIS HIS HIS HIS HIS SEQRES 1 G 105 DG DA DA DA DG DT DT DG DC DG DC DA DC SEQRES 2 G 105 DC DC DT DT DA DC DG DT DC DA DG DA DA SEQRES 3 G 105 DA DA DA DA DC DG DG DG DT DT DT DC DC SEQRES 4 G 105 DT DG DG DT DT DG DG DC DT DC DG DG DA SEQRES 5 G 105 DG DA DG DC DA DT DC DA DG DG DC DG DA SEQRES 6 G 105 DT DG DC DT DC DT DC DC DG DT DT DC DC SEQRES 7 G 105 DA DA DC DA DA DG DG DA DA DA DA DC DA SEQRES 8 G 105 DG DA DC DA DG DT DA DA DC DT DC DA DG SEQRES 9 G 105 DA SEQRES 1 H 81 U G C G C A C C C U U A G SEQRES 2 H 81 C G A G A G G U U U A U C SEQRES 3 H 81 A U U A A G G U C A A C C SEQRES 4 H 81 U C U G G A U G U U G U U SEQRES 5 H 81 U C G G C A U C C U G C A SEQRES 6 H 81 U U G A A U C U G A G U U SEQRES 7 H 81 A C U SEQRES 1 I 14 C G U A A G G G U G C G C SEQRES 2 I 14 A HELIX 1 AA1 SER A 3 ASN A 14 1 12 HELIX 2 AA2 ASN A 22 ARG A 31 1 10 HELIX 3 AA3 SER A 33 ALA A 44 1 12 HELIX 4 AA4 SER A 69 ILE A 83 1 15 HELIX 5 AA5 LEU A 84 LEU A 87 5 4 HELIX 6 AA6 ILE A 102 THR A 107 1 6 HELIX 7 AA7 PRO A 108 ILE A 110 5 3 HELIX 8 AA8 ASP A 122 LEU A 127 1 6 HELIX 9 AA9 ALA A 129 LEU A 139 1 11 HELIX 10 AB1 LEU A 144 CYS A 154 1 11 HELIX 11 AB2 SER A 165 CYS A 174 1 10 HELIX 12 AB3 CYS A 174 ARG A 188 1 15 HELIX 13 AB4 SER A 205 ILE A 220 1 16 HELIX 14 AB5 PRO A 221 GLY A 224 5 4 HELIX 15 AB6 GLY A 256 CYS A 272 1 17 HELIX 16 AB7 GLU A 277 ASP A 292 1 16 HELIX 17 AB8 ASP A 292 GLY A 311 1 20 HELIX 18 AB9 GLU C 8 LYS C 19 1 12 HELIX 19 AC1 ALA C 202 LEU C 213 1 12 HELIX 20 AC2 ASN C 217 LYS C 230 1 14 HELIX 21 AC3 SER C 236 GLU C 250 1 15 HELIX 22 AC4 THR C 263 PHE C 274 1 12 HELIX 23 AC5 LYS C 277 ARG C 292 1 16 HELIX 24 AC6 ALA B 4 LEU B 15 1 12 HELIX 25 AC7 ASN B 22 ARG B 31 1 10 HELIX 26 AC8 SER B 33 THR B 43 1 11 HELIX 27 AC9 ALA B 44 PHE B 46 5 3 HELIX 28 AD1 SER B 69 ILE B 83 1 15 HELIX 29 AD2 LEU B 84 LEU B 87 5 4 HELIX 30 AD3 ILE B 102 THR B 107 1 6 HELIX 31 AD4 PRO B 108 ILE B 110 5 3 HELIX 32 AD5 PHE B 123 LEU B 127 5 5 HELIX 33 AD6 THR B 128 LEU B 139 1 12 HELIX 34 AD7 ASN B 142 CYS B 154 1 13 HELIX 35 AD8 SER B 165 CYS B 174 1 10 HELIX 36 AD9 SER B 175 ARG B 188 1 14 HELIX 37 AE1 SER B 205 ILE B 220 1 16 HELIX 38 AE2 PRO B 221 GLY B 224 5 4 HELIX 39 AE3 GLY B 256 GLY B 273 1 18 HELIX 40 AE4 GLU B 277 ASP B 292 1 16 HELIX 41 AE5 ASP B 292 TYR B 310 1 19 SHEET 1 AA1 2 TYR A 48 VAL A 53 0 SHEET 2 AA1 2 ARG A 63 PRO A 68 -1 O GLN A 67 N ARG A 49 SHEET 1 AA2 4 ILE A 191 TYR A 195 0 SHEET 2 AA2 4 ASP A 198 ALA A 203 -1 O THR A 200 N THR A 193 SHEET 3 AA2 4 PHE A 114 ASP A 119 -1 N LEU A 116 O LEU A 201 SHEET 4 AA2 4 CYS A 233 SER A 235 -1 O SER A 235 N ILE A 115 SHEET 1 AA3 3 LYS A 242 VAL A 243 0 SHEET 2 AA3 3 LEU A 246 ILE A 248 -1 O LEU A 246 N VAL A 243 SHEET 3 AA3 3 VAL A 253 GLY A 254 -1 O GLY A 254 N VAL A 247 SHEET 1 AA4 2 ILE C 253 MET C 256 0 SHEET 2 AA4 2 GLY C 259 VAL C 262 -1 O GLY C 259 N MET C 256 SHEET 1 AA5 2 TYR B 48 VAL B 53 0 SHEET 2 AA5 2 ARG B 63 PRO B 68 -1 O ILE B 65 N TYR B 51 SHEET 1 AA6 4 ILE B 191 ARG B 194 0 SHEET 2 AA6 4 ASP B 198 ALA B 203 -1 O THR B 200 N THR B 193 SHEET 3 AA6 4 PHE B 114 GLU B 121 -1 N LEU B 116 O LEU B 201 SHEET 4 AA6 4 VAL B 226 ILE B 227 -1 O VAL B 226 N GLU B 121 SHEET 1 AA7 4 ILE B 191 ARG B 194 0 SHEET 2 AA7 4 ASP B 198 ALA B 203 -1 O THR B 200 N THR B 193 SHEET 3 AA7 4 PHE B 114 GLU B 121 -1 N LEU B 116 O LEU B 201 SHEET 4 AA7 4 CYS B 233 SER B 235 -1 O SER B 235 N ILE B 115 SHEET 1 AA8 3 LYS B 242 VAL B 243 0 SHEET 2 AA8 3 LEU B 246 ILE B 248 -1 O LEU B 246 N VAL B 243 SHEET 3 AA8 3 VAL B 253 GLY B 254 -1 O GLY B 254 N VAL B 247 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000