HEADER RIBOSOMAL PROTEIN 30-AUG-21 7VB2 TITLE SOLUTION STRUCTURE OF HUMAN RIBOSOMAL PROTEIN UL11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L12; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LARGE RIBOSOMAL SUBUNIT PROTEIN UL11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPL12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS RIBOSOMAL PROTEIN, TRANSLATION, ELONGATION FACTORS EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.M.LEE,K.B.WONG REVDAT 5 15-MAY-24 7VB2 1 REMARK REVDAT 4 14-JUN-23 7VB2 1 REMARK REVDAT 3 08-JUN-22 7VB2 1 JRNL REVDAT 2 25-MAY-22 7VB2 1 JRNL REVDAT 1 20-APR-22 7VB2 0 JRNL AUTH L.YANG,K.M.LEE,C.W.YU,H.IMAI,A.K.CHOI,D.K.BANFIELD,K.ITO, JRNL AUTH 2 T.UCHIUMI,K.B.WONG JRNL TITL THE FLEXIBLE N-TERMINAL MOTIF OF UL11 UNIQUE TO EUKARYOTIC JRNL TITL 2 RIBOSOMES INTERACTS WITH P-COMPLEX AND FACILITATES PROTEIN JRNL TITL 3 TRANSLATION. JRNL REF NUCLEIC ACIDS RES. V. 50 5335 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35544198 JRNL DOI 10.1093/NAR/GKAC292 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300019404. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 306 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM SODIUM PHOSPHATE,50MM REMARK 210 SODIUM SULFATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-15N] HUMAN UL11, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 SULFATE, 0.3 % W/V CHAPS, 5 MM REMARK 210 DTT, 95% H2O/5% D2O; 0.3 MM [U- REMARK 210 13C; U-15N] HUMAN UL11, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 SULFATE, 0.3 % W/V CHAPS, 5 MM REMARK 210 DTT, 95% H2O/5% D2O; 0.3 MM REMARK 210 HUMAN UL11, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM SULFATE, REMARK 210 0.3 % W/V CHAPS, 5 MM DTT, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HN(CA)CO; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N TOCSY; 3D HCCH-TOCSY; REMARK 210 3D HCCH-COSY; 3D HBHA(CO)NH; 3D REMARK 210 (H)CC(CO)NH; 3D H(CC)(CO)NH; 2D REMARK 210 1H-1H NOESY; 2D 1H-1H TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ULTRASHIELD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, X-PLOR NIH, ARIA, REMARK 210 NMRVIEWJ, NMRPIPE REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 900 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 53 63.13 67.33 REMARK 500 1 LEU A 56 61.26 -160.19 REMARK 500 1 SER A 76 -149.66 69.51 REMARK 500 1 SER A 78 61.92 74.98 REMARK 500 1 LYS A 99 -124.51 51.06 REMARK 500 1 SER A 101 -67.10 -155.51 REMARK 500 1 MET A 116 34.59 71.31 REMARK 500 1 ARG A 119 -47.68 -132.23 REMARK 500 1 SER A 120 23.97 -148.58 REMARK 500 1 ALA A 122 -125.77 53.61 REMARK 500 1 ARG A 123 -71.73 -128.09 REMARK 500 1 ASP A 144 -53.72 -174.14 REMARK 500 1 ARG A 146 53.27 -93.84 REMARK 500 1 GLU A 161 -126.06 -114.67 REMARK 500 2 LEU A 35 81.61 -178.03 REMARK 500 2 LEU A 37 -134.55 -156.61 REMARK 500 2 LEU A 56 -97.45 -97.03 REMARK 500 2 ALA A 77 54.66 -113.74 REMARK 500 2 LYS A 96 67.06 -105.77 REMARK 500 2 HIS A 100 -129.55 66.19 REMARK 500 2 HIS A 118 -107.57 -87.47 REMARK 500 2 ARG A 119 72.56 -173.03 REMARK 500 2 ALA A 122 -138.64 53.84 REMARK 500 2 VAL A 143 -94.72 -111.80 REMARK 500 2 GLU A 161 -121.55 -117.86 REMARK 500 3 ASP A 6 -53.70 -173.90 REMARK 500 3 ALA A 24 88.47 60.15 REMARK 500 3 THR A 25 -162.17 -76.87 REMARK 500 3 LEU A 56 -76.35 -101.99 REMARK 500 3 ILE A 98 119.47 -166.73 REMARK 500 3 LYS A 99 -125.90 61.06 REMARK 500 3 ARG A 119 -66.82 -139.53 REMARK 500 3 LEU A 121 75.01 -112.06 REMARK 500 3 ARG A 123 -87.44 -178.59 REMARK 500 3 ARG A 146 58.35 -92.45 REMARK 500 3 GLU A 161 -119.45 -94.31 REMARK 500 4 ALA A 24 -167.47 69.83 REMARK 500 4 LYS A 54 -145.47 65.62 REMARK 500 4 LEU A 56 -83.49 -112.45 REMARK 500 4 GLU A 87 -56.83 -138.20 REMARK 500 4 SER A 101 -83.72 -163.38 REMARK 500 4 MET A 116 56.57 78.74 REMARK 500 4 CYS A 162 -60.89 -166.84 REMARK 500 5 ALA A 24 -149.79 80.37 REMARK 500 5 LYS A 31 -62.56 -93.51 REMARK 500 5 LEU A 35 80.37 -174.99 REMARK 500 5 LEU A 37 -146.58 -166.51 REMARK 500 5 LYS A 86 -58.08 -125.09 REMARK 500 5 HIS A 100 -49.34 -147.12 REMARK 500 5 ARG A 119 -68.93 -142.87 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36442 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF HUMAN RIBOSOMAL PROTEIN UL11 DBREF 7VB2 A 1 165 UNP P30050 RL12_HUMAN 1 165 SEQRES 1 A 165 MET PRO PRO LYS PHE ASP PRO ASN GLU ILE LYS VAL VAL SEQRES 2 A 165 TYR LEU ARG CYS THR GLY GLY GLU VAL GLY ALA THR SER SEQRES 3 A 165 ALA LEU ALA PRO LYS ILE GLY PRO LEU GLY LEU SER PRO SEQRES 4 A 165 LYS LYS VAL GLY ASP ASP ILE ALA LYS ALA THR GLY ASP SEQRES 5 A 165 TRP LYS GLY LEU ARG ILE THR VAL LYS LEU THR ILE GLN SEQRES 6 A 165 ASN ARG GLN ALA GLN ILE GLU VAL VAL PRO SER ALA SER SEQRES 7 A 165 ALA LEU ILE ILE LYS ALA LEU LYS GLU PRO PRO ARG ASP SEQRES 8 A 165 ARG LYS LYS GLN LYS ASN ILE LYS HIS SER GLY ASN ILE SEQRES 9 A 165 THR PHE ASP GLU ILE VAL ASN ILE ALA ARG GLN MET ARG SEQRES 10 A 165 HIS ARG SER LEU ALA ARG GLU LEU SER GLY THR ILE LYS SEQRES 11 A 165 GLU ILE LEU GLY THR ALA GLN SER VAL GLY CYS ASN VAL SEQRES 12 A 165 ASP GLY ARG HIS PRO HIS ASP ILE ILE ASP ASP ILE ASN SEQRES 13 A 165 SER GLY ALA VAL GLU CYS PRO ALA SER HELIX 1 AA1 ALA A 27 GLY A 36 1 10 HELIX 2 AA2 SER A 38 THR A 50 1 13 HELIX 3 AA3 THR A 105 MET A 116 1 12 HELIX 4 AA4 GLU A 124 GLY A 140 1 17 HELIX 5 AA5 HIS A 147 ALA A 159 1 13 SHEET 1 AA1 3 LYS A 11 LEU A 15 0 SHEET 2 AA1 3 THR A 59 GLN A 65 -1 O VAL A 60 N LEU A 15 SHEET 3 AA1 3 GLN A 68 VAL A 74 -1 O GLU A 72 N LYS A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1