HEADER TRANSFERASE 30-AUG-21 7VB4 TITLE A CRYSTAL STRUCTURE OF ALPHAVIRUS NONSTRUCTURAL PROTEIN 4 (NSP4) TITLE 2 REVEALS AN INTRINSICALLY DYNAMIC RNA-DEPENDENT RNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE NSP4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 4,NSP4; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINDBIS VIRUS; SOURCE 3 ORGANISM_COMMON: SINV; SOURCE 4 ORGANISM_TAXID: 11034; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA T1R; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSUMO-LIC KEYWDS RNA DEPENDENT RNA POLYMERASE, RNA DIRECTED RNA POLYMERASE, RDRP, KEYWDS 2 ALPHAVIRUS, NSP4, NONSTRUCTURAL PROTEIN 4, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.B.TAN,D.LUO REVDAT 2 29-NOV-23 7VB4 1 REMARK REVDAT 1 16-FEB-22 7VB4 0 JRNL AUTH Y.B.TAN,L.S.LELLO,X.LIU,Y.S.LAW,C.KANG,J.LESCAR,J.ZHENG, JRNL AUTH 2 A.MERITS,D.LUO JRNL TITL CRYSTAL STRUCTURES OF ALPHAVIRUS NONSTRUCTURAL PROTEIN 4 JRNL TITL 2 (NSP4) REVEAL AN INTRINSICALLY DYNAMIC RNA-DEPENDENT RNA JRNL TITL 3 POLYMERASE FOLD. JRNL REF NUCLEIC ACIDS RES. V. 50 1000 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35037043 JRNL DOI 10.1093/NAR/GKAB1302 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 78862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.440 REMARK 3 FREE R VALUE TEST SET COUNT : 1927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0000 - 4.4800 0.99 6094 153 0.1791 0.2072 REMARK 3 2 4.4700 - 3.5500 0.99 6054 152 0.1526 0.1836 REMARK 3 3 3.5500 - 3.1000 0.98 6042 152 0.1644 0.2093 REMARK 3 4 3.1000 - 2.8200 0.97 5965 149 0.1789 0.2070 REMARK 3 5 2.8200 - 2.6200 0.96 5901 147 0.1800 0.2249 REMARK 3 6 2.6200 - 2.4600 0.96 5910 149 0.1865 0.2487 REMARK 3 7 2.4600 - 2.3400 0.95 5852 143 0.1847 0.2371 REMARK 3 8 2.3400 - 2.2400 0.94 5794 145 0.1851 0.2288 REMARK 3 9 2.2400 - 2.1500 0.94 5744 143 0.1841 0.2310 REMARK 3 10 2.1500 - 2.0800 0.93 5733 144 0.2031 0.2441 REMARK 3 11 2.0800 - 2.0100 0.88 5373 137 0.2333 0.2750 REMARK 3 12 2.0100 - 1.9600 0.83 5121 126 0.2769 0.3092 REMARK 3 13 1.9600 - 1.9000 0.71 4353 111 0.3072 0.3537 REMARK 3 14 1.9000 - 1.8600 0.49 2999 76 0.3331 0.3701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.216 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.003 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7318 REMARK 3 ANGLE : 0.624 9933 REMARK 3 CHIRALITY : 0.043 1156 REMARK 3 PLANARITY : 0.005 1281 REMARK 3 DIHEDRAL : 5.759 999 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1996 29.3952 -6.6408 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.1044 REMARK 3 T33: 0.0998 T12: 0.0261 REMARK 3 T13: -0.0079 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.2678 L22: 0.0710 REMARK 3 L33: 0.0626 L12: -0.0206 REMARK 3 L13: -0.0502 L23: -0.0208 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.1909 S13: -0.0612 REMARK 3 S21: -0.0441 S22: 0.0315 S23: 0.1074 REMARK 3 S31: 0.1309 S32: 0.1039 S33: 0.0059 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5615 26.6245 11.6692 REMARK 3 T TENSOR REMARK 3 T11: -0.0261 T22: 0.2336 REMARK 3 T33: -0.0034 T12: 0.0717 REMARK 3 T13: -0.1110 T23: 0.0989 REMARK 3 L TENSOR REMARK 3 L11: 0.1177 L22: 0.0453 REMARK 3 L33: 0.2409 L12: -0.0361 REMARK 3 L13: -0.0180 L23: 0.0408 REMARK 3 S TENSOR REMARK 3 S11: -0.1665 S12: -0.1043 S13: -0.0501 REMARK 3 S21: 0.1172 S22: 0.0603 S23: -0.0685 REMARK 3 S31: 0.2619 S32: 0.1383 S33: -0.1417 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 337 THROUGH 577 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7622 45.8071 8.1532 REMARK 3 T TENSOR REMARK 3 T11: 0.0149 T22: 0.0717 REMARK 3 T33: 0.0525 T12: -0.0154 REMARK 3 T13: -0.0439 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 0.3316 L22: 0.1126 REMARK 3 L33: 0.2364 L12: -0.3021 REMARK 3 L13: -0.0997 L23: -0.1227 REMARK 3 S TENSOR REMARK 3 S11: -0.1864 S12: -0.1212 S13: 0.0521 REMARK 3 S21: 0.1653 S22: 0.1327 S23: 0.0435 REMARK 3 S31: 0.1294 S32: 0.1137 S33: -0.0348 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 578 THROUGH 602 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9289 42.2494 10.3289 REMARK 3 T TENSOR REMARK 3 T11: -0.0600 T22: 0.0413 REMARK 3 T33: -0.0698 T12: -0.1080 REMARK 3 T13: 0.2181 T23: 0.0949 REMARK 3 L TENSOR REMARK 3 L11: 0.0443 L22: 0.0399 REMARK 3 L33: 0.0160 L12: 0.0247 REMARK 3 L13: 0.0265 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.0891 S13: -0.1271 REMARK 3 S21: 0.0514 S22: 0.0357 S23: 0.0754 REMARK 3 S31: 0.0797 S32: -0.1017 S33: -0.0072 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0078 48.5984 -7.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.0966 REMARK 3 T33: 0.0862 T12: -0.0026 REMARK 3 T13: 0.0107 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1211 L22: 0.1207 REMARK 3 L33: 0.0597 L12: -0.0076 REMARK 3 L13: 0.0018 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.0069 S13: -0.0470 REMARK 3 S21: -0.1148 S22: -0.0276 S23: 0.0596 REMARK 3 S31: -0.0417 S32: -0.1294 S33: 0.0125 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4078 54.8166 -26.9151 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.0811 REMARK 3 T33: 0.0711 T12: -0.0032 REMARK 3 T13: 0.0054 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.1519 L22: 0.2132 REMARK 3 L33: 0.2468 L12: -0.0584 REMARK 3 L13: 0.1089 L23: -0.0804 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0587 S13: 0.0578 REMARK 3 S21: 0.0269 S22: 0.0284 S23: 0.0233 REMARK 3 S31: -0.0230 S32: -0.0685 S33: -0.0041 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 397 THROUGH 601 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8808 39.0266 -22.8013 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0286 REMARK 3 T33: 0.0692 T12: -0.0082 REMARK 3 T13: 0.0240 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.1787 L22: 0.2105 REMARK 3 L33: 0.2319 L12: -0.2388 REMARK 3 L13: 0.0817 L23: -0.0267 REMARK 3 S TENSOR REMARK 3 S11: 0.0679 S12: 0.0627 S13: -0.0325 REMARK 3 S21: -0.0689 S22: -0.0504 S23: 0.0087 REMARK 3 S31: -0.0020 S32: -0.0155 S33: 0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 156684 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 45.001 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 200 DATA REDUNDANCY : 3.455 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.94 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7F0S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M MAGNESIUM ACETATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 91 REMARK 465 ASP A 92 REMARK 465 GLN A 93 REMARK 465 PRO A 94 REMARK 465 GLU A 95 REMARK 465 CYS A 96 REMARK 465 TYR A 97 REMARK 465 LYS A 98 REMARK 465 ILE A 99 REMARK 465 THR A 100 REMARK 465 TYR A 101 REMARK 465 PRO A 102 REMARK 465 LYS A 103 REMARK 465 LYS A 167 REMARK 465 LEU A 168 REMARK 465 ARG A 169 REMARK 465 SER A 170 REMARK 465 TYR A 171 REMARK 465 PRO A 172 REMARK 465 LYS A 173 REMARK 465 LYS A 174 REMARK 465 HIS A 175 REMARK 465 GLU A 176 REMARK 465 TYR A 177 REMARK 465 ARG A 178 REMARK 465 ALA A 179 REMARK 465 CYS A 206 REMARK 465 ASN A 207 REMARK 465 VAL A 208 REMARK 465 THR A 209 REMARK 465 GLN A 210 REMARK 465 MET A 211 REMARK 465 MET A 289 REMARK 465 LYS A 290 REMARK 465 ARG A 291 REMARK 465 ASP A 292 REMARK 465 VAL A 293 REMARK 465 LYS A 294 REMARK 465 VAL A 295 REMARK 465 THR A 296 REMARK 465 PRO A 297 REMARK 465 GLY A 298 REMARK 465 THR A 299 REMARK 465 LYS A 300 REMARK 465 HIS A 301 REMARK 465 THR A 302 REMARK 465 GLU A 303 REMARK 465 GLU A 304 REMARK 465 ARG A 305 REMARK 465 PRO A 306 REMARK 465 LYS A 307 REMARK 465 VAL A 308 REMARK 465 GLN A 309 REMARK 465 VAL A 310 REMARK 465 ILE A 311 REMARK 465 GLN A 312 REMARK 465 LYS A 603 REMARK 465 HIS A 604 REMARK 465 LEU A 605 REMARK 465 TYR A 606 REMARK 465 GLY A 607 REMARK 465 GLY A 608 REMARK 465 PRO A 609 REMARK 465 LYS A 610 REMARK 465 THR B 91 REMARK 465 ASP B 92 REMARK 465 GLN B 93 REMARK 465 PRO B 94 REMARK 465 GLU B 95 REMARK 465 CYS B 96 REMARK 465 TYR B 97 REMARK 465 LYS B 98 REMARK 465 ILE B 99 REMARK 465 THR B 100 REMARK 465 TYR B 101 REMARK 465 PRO B 102 REMARK 465 LYS B 103 REMARK 465 LYS B 167 REMARK 465 LEU B 168 REMARK 465 ARG B 169 REMARK 465 SER B 170 REMARK 465 TYR B 171 REMARK 465 PRO B 172 REMARK 465 LYS B 173 REMARK 465 LYS B 174 REMARK 465 HIS B 175 REMARK 465 GLU B 176 REMARK 465 TYR B 177 REMARK 465 ARG B 178 REMARK 465 CYS B 206 REMARK 465 ASN B 207 REMARK 465 VAL B 208 REMARK 465 THR B 209 REMARK 465 GLN B 210 REMARK 465 ASP B 288 REMARK 465 MET B 289 REMARK 465 LYS B 290 REMARK 465 ARG B 291 REMARK 465 ASP B 292 REMARK 465 VAL B 293 REMARK 465 LYS B 294 REMARK 465 VAL B 295 REMARK 465 THR B 296 REMARK 465 PRO B 297 REMARK 465 GLY B 298 REMARK 465 THR B 299 REMARK 465 LYS B 300 REMARK 465 HIS B 301 REMARK 465 THR B 302 REMARK 465 GLU B 303 REMARK 465 GLU B 304 REMARK 465 ARG B 305 REMARK 465 PRO B 306 REMARK 465 LYS B 307 REMARK 465 ILE B 602 REMARK 465 LYS B 603 REMARK 465 HIS B 604 REMARK 465 LEU B 605 REMARK 465 TYR B 606 REMARK 465 GLY B 607 REMARK 465 GLY B 608 REMARK 465 PRO B 609 REMARK 465 LYS B 610 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 602 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 314 11.14 56.55 REMARK 500 ASP A 346 85.20 -159.91 REMARK 500 THR A 413 38.23 -98.55 REMARK 500 GLU A 451 -127.72 52.44 REMARK 500 ASN A 487 -133.94 55.07 REMARK 500 GLU A 499 -77.48 -122.31 REMARK 500 ASP A 538 97.75 -160.85 REMARK 500 GLU B 213 41.71 -101.58 REMARK 500 ASP B 346 83.54 -150.88 REMARK 500 PHE B 423 -126.47 56.79 REMARK 500 GLU B 451 -127.13 55.76 REMARK 500 CYS B 459 117.24 -168.83 REMARK 500 GLU B 499 -56.24 -132.12 REMARK 500 ASP B 538 94.75 -163.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1235 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B1238 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B1240 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B1241 DISTANCE = 7.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 392 OD1 REMARK 620 2 HOH A 874 O 86.3 REMARK 620 3 HOH A 935 O 87.4 85.0 REMARK 620 4 HOH A 967 O 85.9 172.2 94.4 REMARK 620 5 HOH A 998 O 87.6 94.8 175.0 85.2 REMARK 620 6 HOH A1199 O 177.4 95.6 94.4 92.1 90.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 466 OD1 REMARK 620 2 HOH A 805 O 176.1 REMARK 620 3 HOH A 818 O 80.2 96.9 REMARK 620 4 HOH A 889 O 75.0 102.5 92.0 REMARK 620 5 HOH A1031 O 85.7 97.0 88.4 160.3 REMARK 620 6 HOH A1107 O 89.2 93.6 169.4 86.2 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 392 OD1 REMARK 620 2 HOH B 823 O 90.1 REMARK 620 3 HOH B 854 O 90.2 93.5 REMARK 620 4 HOH B 973 O 85.3 175.4 87.5 REMARK 620 5 HOH B1030 O 87.2 86.6 177.5 92.2 REMARK 620 6 HOH B1194 O 171.5 97.0 93.8 87.4 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 466 OD1 REMARK 620 2 HOH B 814 O 170.5 REMARK 620 3 HOH B 841 O 80.6 96.0 REMARK 620 4 HOH B 909 O 90.2 98.7 89.2 REMARK 620 5 HOH B1060 O 84.3 86.4 82.7 170.8 REMARK 620 6 HOH B1064 O 84.2 98.2 164.2 95.5 91.3 REMARK 620 N 1 2 3 4 5 DBREF 7VB4 A 91 610 UNP P03317 POLN_SINDV 1994 2513 DBREF 7VB4 B 91 610 UNP P03317 POLN_SINDV 1994 2513 SEQRES 1 A 520 THR ASP GLN PRO GLU CYS TYR LYS ILE THR TYR PRO LYS SEQRES 2 A 520 PRO LEU TYR SER SER SER VAL PRO ALA ASN TYR SER ASP SEQRES 3 A 520 PRO GLN PHE ALA VAL ALA VAL CYS ASN ASN TYR LEU HIS SEQRES 4 A 520 GLU ASN TYR PRO THR VAL ALA SER TYR GLN ILE THR ASP SEQRES 5 A 520 GLU TYR ASP ALA TYR LEU ASP MET VAL ASP GLY THR VAL SEQRES 6 A 520 ALA CYS LEU ASP THR ALA THR PHE CYS PRO ALA LYS LEU SEQRES 7 A 520 ARG SER TYR PRO LYS LYS HIS GLU TYR ARG ALA PRO ASN SEQRES 8 A 520 ILE ARG SER ALA VAL PRO SER ALA MET GLN ASN THR LEU SEQRES 9 A 520 GLN ASN VAL LEU ILE ALA ALA THR LYS ARG ASN CYS ASN SEQRES 10 A 520 VAL THR GLN MET ARG GLU LEU PRO THR LEU ASP SER ALA SEQRES 11 A 520 THR PHE ASN VAL GLU CYS PHE ARG LYS TYR ALA CYS ASN SEQRES 12 A 520 ASP GLU TYR TRP GLU GLU PHE ALA ARG LYS PRO ILE ARG SEQRES 13 A 520 ILE THR THR GLU PHE VAL THR ALA TYR VAL ALA ARG LEU SEQRES 14 A 520 LYS GLY PRO LYS ALA ALA ALA LEU PHE ALA LYS THR TYR SEQRES 15 A 520 ASN LEU VAL PRO LEU GLN GLU VAL PRO MET ASP ARG PHE SEQRES 16 A 520 VAL MET ASP MET LYS ARG ASP VAL LYS VAL THR PRO GLY SEQRES 17 A 520 THR LYS HIS THR GLU GLU ARG PRO LYS VAL GLN VAL ILE SEQRES 18 A 520 GLN ALA ALA GLU PRO LEU ALA THR ALA TYR LEU CYS GLY SEQRES 19 A 520 ILE HIS ARG GLU LEU VAL ARG ARG LEU THR ALA VAL LEU SEQRES 20 A 520 LEU PRO ASN ILE HIS THR LEU PHE ASP MET SER ALA GLU SEQRES 21 A 520 ASP PHE ASP ALA ILE ILE ALA GLU HIS PHE LYS GLN GLY SEQRES 22 A 520 ASP PRO VAL LEU GLU THR ASP ILE ALA SER PHE ASP LYS SEQRES 23 A 520 SER GLN ASP ASP ALA MET ALA LEU THR GLY LEU MET ILE SEQRES 24 A 520 LEU GLU ASP LEU GLY VAL ASP GLN PRO LEU LEU ASP LEU SEQRES 25 A 520 ILE GLU CYS ALA PHE GLY GLU ILE SER SER THR HIS LEU SEQRES 26 A 520 PRO THR GLY THR ARG PHE LYS PHE GLY ALA MET MET LYS SEQRES 27 A 520 SER GLY MET PHE LEU THR LEU PHE VAL ASN THR VAL LEU SEQRES 28 A 520 ASN VAL VAL ILE ALA SER ARG VAL LEU GLU GLU ARG LEU SEQRES 29 A 520 LYS THR SER ARG CYS ALA ALA PHE ILE GLY ASP ASP ASN SEQRES 30 A 520 ILE ILE HIS GLY VAL VAL SER ASP LYS GLU MET ALA GLU SEQRES 31 A 520 ARG CYS ALA THR TRP LEU ASN MET GLU VAL LYS ILE ILE SEQRES 32 A 520 ASP ALA VAL ILE GLY GLU ARG PRO PRO TYR PHE CYS GLY SEQRES 33 A 520 GLY PHE ILE LEU GLN ASP SER VAL THR SER THR ALA CYS SEQRES 34 A 520 ARG VAL ALA ASP PRO LEU LYS ARG LEU PHE LYS LEU GLY SEQRES 35 A 520 LYS PRO LEU PRO ALA ASP ASP GLU GLN ASP GLU ASP ARG SEQRES 36 A 520 ARG ARG ALA LEU LEU ASP GLU THR LYS ALA TRP PHE ARG SEQRES 37 A 520 VAL GLY ILE THR GLY THR LEU ALA VAL ALA VAL THR THR SEQRES 38 A 520 ARG TYR GLU VAL ASP ASN ILE THR PRO VAL LEU LEU ALA SEQRES 39 A 520 LEU ARG THR PHE ALA GLN SER LYS ARG ALA PHE GLN ALA SEQRES 40 A 520 ILE ARG GLY GLU ILE LYS HIS LEU TYR GLY GLY PRO LYS SEQRES 1 B 520 THR ASP GLN PRO GLU CYS TYR LYS ILE THR TYR PRO LYS SEQRES 2 B 520 PRO LEU TYR SER SER SER VAL PRO ALA ASN TYR SER ASP SEQRES 3 B 520 PRO GLN PHE ALA VAL ALA VAL CYS ASN ASN TYR LEU HIS SEQRES 4 B 520 GLU ASN TYR PRO THR VAL ALA SER TYR GLN ILE THR ASP SEQRES 5 B 520 GLU TYR ASP ALA TYR LEU ASP MET VAL ASP GLY THR VAL SEQRES 6 B 520 ALA CYS LEU ASP THR ALA THR PHE CYS PRO ALA LYS LEU SEQRES 7 B 520 ARG SER TYR PRO LYS LYS HIS GLU TYR ARG ALA PRO ASN SEQRES 8 B 520 ILE ARG SER ALA VAL PRO SER ALA MET GLN ASN THR LEU SEQRES 9 B 520 GLN ASN VAL LEU ILE ALA ALA THR LYS ARG ASN CYS ASN SEQRES 10 B 520 VAL THR GLN MET ARG GLU LEU PRO THR LEU ASP SER ALA SEQRES 11 B 520 THR PHE ASN VAL GLU CYS PHE ARG LYS TYR ALA CYS ASN SEQRES 12 B 520 ASP GLU TYR TRP GLU GLU PHE ALA ARG LYS PRO ILE ARG SEQRES 13 B 520 ILE THR THR GLU PHE VAL THR ALA TYR VAL ALA ARG LEU SEQRES 14 B 520 LYS GLY PRO LYS ALA ALA ALA LEU PHE ALA LYS THR TYR SEQRES 15 B 520 ASN LEU VAL PRO LEU GLN GLU VAL PRO MET ASP ARG PHE SEQRES 16 B 520 VAL MET ASP MET LYS ARG ASP VAL LYS VAL THR PRO GLY SEQRES 17 B 520 THR LYS HIS THR GLU GLU ARG PRO LYS VAL GLN VAL ILE SEQRES 18 B 520 GLN ALA ALA GLU PRO LEU ALA THR ALA TYR LEU CYS GLY SEQRES 19 B 520 ILE HIS ARG GLU LEU VAL ARG ARG LEU THR ALA VAL LEU SEQRES 20 B 520 LEU PRO ASN ILE HIS THR LEU PHE ASP MET SER ALA GLU SEQRES 21 B 520 ASP PHE ASP ALA ILE ILE ALA GLU HIS PHE LYS GLN GLY SEQRES 22 B 520 ASP PRO VAL LEU GLU THR ASP ILE ALA SER PHE ASP LYS SEQRES 23 B 520 SER GLN ASP ASP ALA MET ALA LEU THR GLY LEU MET ILE SEQRES 24 B 520 LEU GLU ASP LEU GLY VAL ASP GLN PRO LEU LEU ASP LEU SEQRES 25 B 520 ILE GLU CYS ALA PHE GLY GLU ILE SER SER THR HIS LEU SEQRES 26 B 520 PRO THR GLY THR ARG PHE LYS PHE GLY ALA MET MET LYS SEQRES 27 B 520 SER GLY MET PHE LEU THR LEU PHE VAL ASN THR VAL LEU SEQRES 28 B 520 ASN VAL VAL ILE ALA SER ARG VAL LEU GLU GLU ARG LEU SEQRES 29 B 520 LYS THR SER ARG CYS ALA ALA PHE ILE GLY ASP ASP ASN SEQRES 30 B 520 ILE ILE HIS GLY VAL VAL SER ASP LYS GLU MET ALA GLU SEQRES 31 B 520 ARG CYS ALA THR TRP LEU ASN MET GLU VAL LYS ILE ILE SEQRES 32 B 520 ASP ALA VAL ILE GLY GLU ARG PRO PRO TYR PHE CYS GLY SEQRES 33 B 520 GLY PHE ILE LEU GLN ASP SER VAL THR SER THR ALA CYS SEQRES 34 B 520 ARG VAL ALA ASP PRO LEU LYS ARG LEU PHE LYS LEU GLY SEQRES 35 B 520 LYS PRO LEU PRO ALA ASP ASP GLU GLN ASP GLU ASP ARG SEQRES 36 B 520 ARG ARG ALA LEU LEU ASP GLU THR LYS ALA TRP PHE ARG SEQRES 37 B 520 VAL GLY ILE THR GLY THR LEU ALA VAL ALA VAL THR THR SEQRES 38 B 520 ARG TYR GLU VAL ASP ASN ILE THR PRO VAL LEU LEU ALA SEQRES 39 B 520 LEU ARG THR PHE ALA GLN SER LYS ARG ALA PHE GLN ALA SEQRES 40 B 520 ILE ARG GLY GLU ILE LYS HIS LEU TYR GLY GLY PRO LYS HET MG A 701 1 HET MG A 702 1 HET GOL A 703 6 HET GOL A 704 6 HET MG B 701 1 HET MG B 702 1 HET GOL B 703 6 HET GOL B 704 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 4(MG 2+) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 11 HOH *876(H2 O) HELIX 1 AA1 ASP A 116 ASN A 131 1 16 HELIX 2 AA2 SER A 137 VAL A 151 1 15 HELIX 3 AA3 GLY A 153 THR A 160 1 8 HELIX 4 AA4 ASN A 192 ASN A 205 1 14 HELIX 5 AA5 GLU A 213 CYS A 232 1 20 HELIX 6 AA6 TYR A 236 LYS A 243 1 8 HELIX 7 AA7 THR A 248 GLY A 261 1 14 HELIX 8 AA8 GLY A 261 TYR A 272 1 12 HELIX 9 AA9 PRO A 281 PHE A 285 5 5 HELIX 10 AB1 ALA A 314 LEU A 337 1 24 HELIX 11 AB2 SER A 348 PHE A 360 1 13 HELIX 12 AB3 ASP A 375 GLN A 378 5 4 HELIX 13 AB4 ASP A 379 LEU A 393 1 15 HELIX 14 AB5 ASP A 396 SER A 412 1 17 HELIX 15 AB6 GLY A 424 GLU A 451 1 28 HELIX 16 AB7 GLU A 451 THR A 456 1 6 HELIX 17 AB8 ASP A 475 ASN A 487 1 13 HELIX 18 AB9 ASP A 523 GLY A 532 1 10 HELIX 19 AC1 ASP A 538 PHE A 557 1 20 HELIX 20 AC2 ILE A 561 GLU A 574 1 14 HELIX 21 AC3 ILE A 578 SER A 591 1 14 HELIX 22 AC4 SER A 591 GLY A 600 1 10 HELIX 23 AC5 ASP B 116 ASN B 131 1 16 HELIX 24 AC6 SER B 137 VAL B 151 1 15 HELIX 25 AC7 GLY B 153 THR B 160 1 8 HELIX 26 AC8 ASN B 192 ASN B 205 1 14 HELIX 27 AC9 GLU B 213 CYS B 232 1 20 HELIX 28 AD1 TYR B 236 LYS B 243 1 8 HELIX 29 AD2 THR B 248 GLY B 261 1 14 HELIX 30 AD3 GLY B 261 TYR B 272 1 12 HELIX 31 AD4 PRO B 281 PHE B 285 5 5 HELIX 32 AD5 ILE B 311 ALA B 313 5 3 HELIX 33 AD6 ALA B 314 LEU B 337 1 24 HELIX 34 AD7 SER B 348 PHE B 360 1 13 HELIX 35 AD8 ASP B 375 GLN B 378 5 4 HELIX 36 AD9 ASP B 379 LEU B 393 1 15 HELIX 37 AE1 ASP B 396 SER B 412 1 17 HELIX 38 AE2 GLY B 424 GLU B 451 1 28 HELIX 39 AE3 GLU B 451 THR B 456 1 6 HELIX 40 AE4 ASP B 475 ASN B 487 1 13 HELIX 41 AE5 ASP B 523 GLY B 532 1 10 HELIX 42 AE6 ASP B 538 PHE B 557 1 20 HELIX 43 AE7 ILE B 561 GLU B 574 1 14 HELIX 44 AE8 ILE B 578 GLN B 590 1 13 HELIX 45 AE9 SER B 591 GLN B 596 1 6 SHEET 1 AA1 5 ILE A 341 THR A 343 0 SHEET 2 AA1 5 ALA A 460 ILE A 463 1 O ALA A 460 N HIS A 342 SHEET 3 AA1 5 ASP A 466 HIS A 470 -1 O ILE A 468 N ALA A 461 SHEET 4 AA1 5 PRO A 365 ASP A 370 -1 N LEU A 367 O ILE A 469 SHEET 5 AA1 5 LYS A 491 VAL A 496 -1 O LYS A 491 N ASP A 370 SHEET 1 AA2 2 GLY A 507 GLN A 511 0 SHEET 2 AA2 2 ALA A 518 ALA A 522 -1 O VAL A 521 N PHE A 508 SHEET 1 AA3 5 ILE B 341 THR B 343 0 SHEET 2 AA3 5 ALA B 460 ILE B 463 1 O ALA B 460 N HIS B 342 SHEET 3 AA3 5 ASP B 466 HIS B 470 -1 O ILE B 468 N ALA B 461 SHEET 4 AA3 5 PRO B 365 ASP B 370 -1 N LEU B 367 O ILE B 469 SHEET 5 AA3 5 LYS B 491 VAL B 496 -1 O LYS B 491 N ASP B 370 SHEET 1 AA4 2 GLY B 507 GLN B 511 0 SHEET 2 AA4 2 ALA B 518 ALA B 522 -1 O VAL B 521 N PHE B 508 SSBOND 1 CYS A 164 CYS A 323 1555 1555 2.03 SSBOND 2 CYS B 164 CYS B 323 1555 1555 2.03 LINK OD1 ASP A 392 MG MG A 702 1555 1555 2.05 LINK OD1 ASP A 466 MG MG A 701 1555 1555 2.18 LINK MG MG A 701 O HOH A 805 1555 1555 2.06 LINK MG MG A 701 O HOH A 818 1555 1555 2.05 LINK MG MG A 701 O HOH A 889 1555 1555 2.20 LINK MG MG A 701 O HOH A1031 1555 1555 2.05 LINK MG MG A 701 O HOH A1107 1555 1555 2.22 LINK MG MG A 702 O HOH A 874 1555 1555 2.13 LINK MG MG A 702 O HOH A 935 1555 1555 2.20 LINK MG MG A 702 O HOH A 967 1555 1555 2.01 LINK MG MG A 702 O HOH A 998 1555 1555 2.02 LINK MG MG A 702 O HOH A1199 1555 1555 2.18 LINK OD1 ASP B 392 MG MG B 702 1555 1555 2.06 LINK OD1 ASP B 466 MG MG B 701 1555 1555 2.30 LINK MG MG B 701 O HOH B 814 1555 1555 2.09 LINK MG MG B 701 O HOH B 841 1555 1555 2.11 LINK MG MG B 701 O HOH B 909 1555 1555 2.10 LINK MG MG B 701 O HOH B1060 1555 1555 2.06 LINK MG MG B 701 O HOH B1064 1555 1555 2.08 LINK MG MG B 702 O HOH B 823 1555 1555 2.22 LINK MG MG B 702 O HOH B 854 1555 1555 2.13 LINK MG MG B 702 O HOH B 973 1555 1555 2.08 LINK MG MG B 702 O HOH B1030 1555 1555 2.12 LINK MG MG B 702 O HOH B1194 1555 1555 2.01 CISPEP 1 TYR A 132 PRO A 133 0 6.88 CISPEP 2 LEU A 415 PRO A 416 0 -4.64 CISPEP 3 TYR B 132 PRO B 133 0 8.95 CISPEP 4 LEU B 415 PRO B 416 0 -5.51 CRYST1 67.000 68.290 71.070 115.97 106.71 95.90 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014925 0.001542 0.006012 0.00000 SCALE2 0.000000 0.014721 0.008290 0.00000 SCALE3 0.000000 0.000000 0.016860 0.00000