HEADER TRANSFERASE 01-SEP-21 7VBT TITLE CRYSTAL STRUCTURE OF RIOK2 IN COMPLEX WITH CQ211 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE RIO2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIO KINASE 2; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIOK2, RIO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIOK2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHU,Z.M.ZHANG REVDAT 2 29-NOV-23 7VBT 1 REMARK REVDAT 1 06-JUL-22 7VBT 0 JRNL AUTH Y.OUYANG,H.SI,C.ZHU,L.ZHONG,H.MA,Z.LI,H.XIONG,T.LIU,Z.LIU, JRNL AUTH 2 Z.ZHANG,Z.M.ZHANG,Q.CAI JRNL TITL DISCOVERY OF JRNL TITL 2 8-(6-METHOXYPYRIDIN-3-YL)-1-(4-(PIPERAZIN-1-YL) JRNL TITL 3 -3-(TRIFLUOROMETHYL)PHENYL)-1,5-DIHYDRO- 4H JRNL TITL 4 -[1,2,3]TRIAZOLO[4,5- C ]QUINOLIN-4-ONE (CQ211) AS A HIGHLY JRNL TITL 5 POTENT AND SELECTIVE RIOK2 INHIBITOR. JRNL REF J.MED.CHEM. V. 65 7833 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35584513 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00271 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.373 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.684 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8000 - 6.1176 0.98 1738 144 0.1812 0.2343 REMARK 3 2 6.1176 - 4.8573 1.00 1665 139 0.2082 0.2137 REMARK 3 3 4.8573 - 4.2438 1.00 1655 138 0.1897 0.2258 REMARK 3 4 4.2438 - 3.8560 1.00 1656 138 0.1994 0.2621 REMARK 3 5 3.8560 - 3.5797 1.00 1626 135 0.2078 0.2233 REMARK 3 6 3.5797 - 3.3687 1.00 1620 136 0.2294 0.2447 REMARK 3 7 3.3687 - 3.2000 1.00 1641 136 0.2566 0.3162 REMARK 3 8 3.2000 - 3.0608 1.00 1619 135 0.2661 0.2840 REMARK 3 9 3.0608 - 2.9430 1.00 1612 134 0.2678 0.3018 REMARK 3 10 2.9430 - 2.8414 1.00 1634 135 0.2680 0.3697 REMARK 3 11 2.8414 - 2.7526 1.00 1621 134 0.2845 0.2971 REMARK 3 12 2.7526 - 2.6739 1.00 1603 135 0.3031 0.3385 REMARK 3 13 2.6739 - 2.6035 1.00 1587 132 0.3287 0.3497 REMARK 3 14 2.6035 - 2.5400 1.00 1622 135 0.3308 0.3609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.367 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.064 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4755 REMARK 3 ANGLE : 0.850 6452 REMARK 3 CHIRALITY : 0.036 705 REMARK 3 PLANARITY : 0.005 817 REMARK 3 DIHEDRAL : 16.016 1727 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8301 -4.7272 22.2850 REMARK 3 T TENSOR REMARK 3 T11: 0.6358 T22: 0.9647 REMARK 3 T33: 0.5280 T12: -0.0665 REMARK 3 T13: -0.0548 T23: -0.0917 REMARK 3 L TENSOR REMARK 3 L11: 5.6100 L22: 5.7705 REMARK 3 L33: 5.3900 L12: 0.9910 REMARK 3 L13: -1.1881 L23: -1.3961 REMARK 3 S TENSOR REMARK 3 S11: 0.2637 S12: -1.2057 S13: 0.1434 REMARK 3 S21: 0.9095 S22: -0.2368 S23: -0.8073 REMARK 3 S31: -0.6066 S32: 0.7548 S33: -0.0043 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9526 -10.9082 26.7869 REMARK 3 T TENSOR REMARK 3 T11: 0.6512 T22: 0.8849 REMARK 3 T33: 0.4585 T12: -0.0658 REMARK 3 T13: 0.0199 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.5293 L22: 6.8565 REMARK 3 L33: 6.0155 L12: 0.2927 REMARK 3 L13: -0.3561 L23: -1.3582 REMARK 3 S TENSOR REMARK 3 S11: 0.3900 S12: -0.9789 S13: -0.3338 REMARK 3 S21: 1.0117 S22: 0.0342 S23: -0.3911 REMARK 3 S31: 0.2699 S32: -0.2144 S33: -0.4363 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3377 -3.1864 19.6989 REMARK 3 T TENSOR REMARK 3 T11: 0.6255 T22: 0.7420 REMARK 3 T33: 0.4209 T12: -0.0877 REMARK 3 T13: -0.0613 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 4.2541 L22: 2.6305 REMARK 3 L33: 1.6115 L12: 0.9738 REMARK 3 L13: -1.1626 L23: -0.4751 REMARK 3 S TENSOR REMARK 3 S11: 0.2309 S12: -0.6329 S13: 0.0208 REMARK 3 S21: 0.3841 S22: -0.0760 S23: -0.1349 REMARK 3 S31: 0.0356 S32: -0.2467 S33: -0.1303 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7560 7.3607 10.0353 REMARK 3 T TENSOR REMARK 3 T11: 0.6253 T22: 0.7045 REMARK 3 T33: 0.5170 T12: -0.1061 REMARK 3 T13: 0.0557 T23: -0.1159 REMARK 3 L TENSOR REMARK 3 L11: 6.2222 L22: 2.9782 REMARK 3 L33: 3.5583 L12: -2.8409 REMARK 3 L13: 1.3967 L23: -2.5370 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: -0.6567 S13: -0.1507 REMARK 3 S21: 0.4292 S22: 0.0613 S23: 0.1200 REMARK 3 S31: -0.3370 S32: -0.3173 S33: 0.3162 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9181 -1.3605 4.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.4596 T22: 0.4556 REMARK 3 T33: 0.4488 T12: -0.0506 REMARK 3 T13: -0.0388 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.9748 L22: 2.3650 REMARK 3 L33: 4.4408 L12: -0.2630 REMARK 3 L13: -0.5699 L23: -0.0522 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: -0.0937 S13: 0.0265 REMARK 3 S21: 0.2493 S22: -0.1393 S23: -0.3537 REMARK 3 S31: -0.2252 S32: 0.2574 S33: 0.0134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2140 8.6473 0.1244 REMARK 3 T TENSOR REMARK 3 T11: 0.5422 T22: 0.6390 REMARK 3 T33: 0.6102 T12: -0.1130 REMARK 3 T13: -0.0389 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.9844 L22: 2.4851 REMARK 3 L33: 2.7019 L12: 1.2305 REMARK 3 L13: -1.3520 L23: -0.3943 REMARK 3 S TENSOR REMARK 3 S11: 0.0939 S12: -0.1198 S13: 0.3063 REMARK 3 S21: 0.1680 S22: -0.0664 S23: -0.0606 REMARK 3 S31: -0.5194 S32: 0.4933 S33: -0.0440 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3692 9.3509 -13.8208 REMARK 3 T TENSOR REMARK 3 T11: 0.5002 T22: 0.7190 REMARK 3 T33: 0.5999 T12: -0.0933 REMARK 3 T13: 0.0023 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.1171 L22: 3.4013 REMARK 3 L33: 3.9365 L12: -1.3863 REMARK 3 L13: -1.4851 L23: 2.7741 REMARK 3 S TENSOR REMARK 3 S11: -0.2323 S12: -0.0817 S13: 0.4652 REMARK 3 S21: 0.2447 S22: 0.2149 S23: -0.1407 REMARK 3 S31: 0.0963 S32: 0.3299 S33: 0.0801 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3959 10.5153 -12.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.5209 T22: 0.5981 REMARK 3 T33: 0.5953 T12: -0.0439 REMARK 3 T13: 0.0079 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.4140 L22: 4.1403 REMARK 3 L33: 3.5658 L12: -0.1103 REMARK 3 L13: -0.6801 L23: 1.5462 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.0358 S13: 0.2954 REMARK 3 S21: -0.2403 S22: -0.0110 S23: -0.2729 REMARK 3 S31: -0.2148 S32: 0.3692 S33: 0.0783 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3945 6.1143 -22.5832 REMARK 3 T TENSOR REMARK 3 T11: 1.0879 T22: 1.2334 REMARK 3 T33: 0.8880 T12: -0.1910 REMARK 3 T13: 0.0011 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 0.8862 L22: 8.2453 REMARK 3 L33: 0.7656 L12: -0.3113 REMARK 3 L13: -0.7941 L23: -0.1409 REMARK 3 S TENSOR REMARK 3 S11: 0.1269 S12: 0.8204 S13: 0.0801 REMARK 3 S21: 1.0353 S22: -0.7435 S23: -1.7227 REMARK 3 S31: 0.2686 S32: 0.2527 S33: 0.4458 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4841 -13.5406 2.7464 REMARK 3 T TENSOR REMARK 3 T11: 0.5025 T22: 0.5090 REMARK 3 T33: 0.5749 T12: 0.0280 REMARK 3 T13: 0.0552 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.4779 L22: 5.8506 REMARK 3 L33: 2.5417 L12: 2.3114 REMARK 3 L13: -2.1113 L23: -3.5607 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: -0.7938 S13: -0.5104 REMARK 3 S21: 0.5619 S22: -0.2942 S23: -0.4364 REMARK 3 S31: 0.6157 S32: 0.7876 S33: 0.0963 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3801 -30.7041 -5.2768 REMARK 3 T TENSOR REMARK 3 T11: 0.6900 T22: 0.6502 REMARK 3 T33: 0.6145 T12: -0.0726 REMARK 3 T13: -0.0224 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 3.7375 L22: 6.4374 REMARK 3 L33: 2.9177 L12: -0.1770 REMARK 3 L13: 0.0883 L23: -1.3946 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.2344 S13: -0.3367 REMARK 3 S21: -0.0216 S22: 0.1656 S23: -0.2580 REMARK 3 S31: 0.3871 S32: -0.1639 S33: -0.1947 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4878 -21.0899 -11.2870 REMARK 3 T TENSOR REMARK 3 T11: 0.6287 T22: 0.6297 REMARK 3 T33: 0.4839 T12: -0.1633 REMARK 3 T13: -0.0346 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 1.7755 L22: 6.0330 REMARK 3 L33: 2.8996 L12: -1.8369 REMARK 3 L13: -0.9115 L23: -0.8640 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: 0.2829 S13: -0.2766 REMARK 3 S21: -0.2196 S22: -0.1175 S23: -0.1080 REMARK 3 S31: 0.4256 S32: -0.1128 S33: 0.0636 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5891 -8.4613 -8.1286 REMARK 3 T TENSOR REMARK 3 T11: 0.4440 T22: 0.7662 REMARK 3 T33: 0.4034 T12: -0.0698 REMARK 3 T13: 0.0006 T23: -0.0635 REMARK 3 L TENSOR REMARK 3 L11: 3.3854 L22: 4.7788 REMARK 3 L33: 1.8672 L12: -2.5079 REMARK 3 L13: -0.0993 L23: -0.4838 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.0585 S13: -0.2974 REMARK 3 S21: -0.0873 S22: 0.0423 S23: 0.4300 REMARK 3 S31: 0.1260 S32: -1.0527 S33: -0.1085 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0730 9.6210 -15.4235 REMARK 3 T TENSOR REMARK 3 T11: 0.4839 T22: 0.6832 REMARK 3 T33: 0.4792 T12: 0.0359 REMARK 3 T13: -0.0170 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.9948 L22: 2.4213 REMARK 3 L33: 3.5265 L12: 0.3178 REMARK 3 L13: 1.2564 L23: 1.2152 REMARK 3 S TENSOR REMARK 3 S11: -0.1510 S12: 0.0267 S13: 0.4188 REMARK 3 S21: -0.0721 S22: -0.1057 S23: 0.2578 REMARK 3 S31: -0.1342 S32: -0.6017 S33: 0.2216 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 277 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3533 20.1262 -10.6003 REMARK 3 T TENSOR REMARK 3 T11: 1.0063 T22: 0.8367 REMARK 3 T33: 1.0163 T12: 0.2614 REMARK 3 T13: -0.0147 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.7426 L22: 2.0025 REMARK 3 L33: 2.2974 L12: 0.1588 REMARK 3 L13: 0.3996 L23: 0.7617 REMARK 3 S TENSOR REMARK 3 S11: 0.2304 S12: -0.4396 S13: 1.2359 REMARK 3 S21: 0.6696 S22: 0.3680 S23: 0.3169 REMARK 3 S31: -0.4973 S32: 0.1760 S33: -0.1527 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 298 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1416 -4.7913 5.1971 REMARK 3 T TENSOR REMARK 3 T11: 0.6071 T22: 1.0711 REMARK 3 T33: 0.4857 T12: -0.0190 REMARK 3 T13: 0.0040 T23: -0.0735 REMARK 3 L TENSOR REMARK 3 L11: 6.8885 L22: 9.0745 REMARK 3 L33: 6.6487 L12: -2.7512 REMARK 3 L13: 3.1495 L23: -4.3366 REMARK 3 S TENSOR REMARK 3 S11: 0.1403 S12: -0.7036 S13: -0.3674 REMARK 3 S21: 0.2904 S22: 0.0299 S23: 0.1162 REMARK 3 S31: 0.0001 S32: -0.0818 S33: -0.1841 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : CHAIN 'B' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300022778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9897 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26038 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6HK6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES (PH 5.5), 3% ISOPROPANOL, 10 REMARK 280 MM MGCL2, EVAPORATION, RECRYSTALLIZATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.25850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.48250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.80250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.48250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.25850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.80250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 THR A 130 REMARK 465 SER A 131 REMARK 465 PHE A 132 REMARK 465 ARG A 133 REMARK 465 ASN A 134 REMARK 465 LEU A 135 REMARK 465 LYS A 136 REMARK 465 ASN A 137 REMARK 465 LYS A 138 REMARK 465 ARG A 139 REMARK 465 ASP A 140 REMARK 465 TYR A 141 REMARK 465 HIS A 142 REMARK 465 LYS A 143 REMARK 465 HIS A 144 REMARK 465 ARG A 145 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 LEU B 44 REMARK 465 LYS B 45 REMARK 465 ARG B 129 REMARK 465 THR B 130 REMARK 465 SER B 131 REMARK 465 PHE B 132 REMARK 465 ARG B 133 REMARK 465 ASN B 134 REMARK 465 LEU B 135 REMARK 465 LYS B 136 REMARK 465 ASN B 137 REMARK 465 LYS B 138 REMARK 465 ARG B 139 REMARK 465 ASP B 140 REMARK 465 TYR B 141 REMARK 465 HIS B 142 REMARK 465 LYS B 143 REMARK 465 HIS B 144 REMARK 465 ARG B 145 REMARK 465 ASP B 294 REMARK 465 THR B 295 REMARK 465 LEU B 296 REMARK 465 GLU B 314 REMARK 465 LEU B 315 REMARK 465 LEU B 316 REMARK 465 HIS B 317 REMARK 465 PRO B 318 REMARK 465 LEU B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 51 NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 146 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 172 NZ REMARK 470 HIS A 201 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 203 CD OE1 OE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 275 CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 LYS A 288 CE NZ REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ASP A 294 CG OD1 OD2 REMARK 470 LEU A 296 CG CD1 CD2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 VAL B 6 CG1 CG2 REMARK 470 ARG B 10 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 HIS B 46 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 51 NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 THR B 69 OG1 CG2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 HIS B 146 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 172 NZ REMARK 470 MET B 274 CG SD CE REMARK 470 LYS B 275 CE NZ REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 LEU B 283 CG CD1 CD2 REMARK 470 PHE B 284 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 288 CE NZ REMARK 470 GLU B 293 CG CD OE1 OE2 REMARK 470 ASP B 313 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 170 OH TYR B 305 2.04 REMARK 500 O PHE A 284 O HOH A 501 2.07 REMARK 500 NH1 ARG A 292 O HOH A 502 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 183 -115.01 56.78 REMARK 500 ASP A 228 36.43 -141.41 REMARK 500 LEU A 283 48.07 -97.34 REMARK 500 GLU A 293 -146.98 -76.89 REMARK 500 ASP A 297 -150.59 -105.41 REMARK 500 ARG B 183 -114.10 55.95 REMARK 500 ASP B 228 37.84 -142.89 REMARK 500 LEU B 283 53.18 -95.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 7VBT A 1 319 UNP Q9BVS4 RIOK2_HUMAN 1 319 DBREF 7VBT B 1 319 UNP Q9BVS4 RIOK2_HUMAN 1 319 SEQRES 1 A 319 MET GLY LYS VAL ASN VAL ALA LYS LEU ARG TYR MET SER SEQRES 2 A 319 ARG ASP ASP PHE ARG VAL LEU THR ALA VAL GLU MET GLY SEQRES 3 A 319 MET LYS ASN HIS GLU ILE VAL PRO GLY SER LEU ILE ALA SEQRES 4 A 319 SER ILE ALA SER LEU LYS HIS GLY GLY CYS ASN LYS VAL SEQRES 5 A 319 LEU ARG GLU LEU VAL LYS HIS LYS LEU ILE ALA TRP GLU SEQRES 6 A 319 ARG THR LYS THR VAL GLN GLY TYR ARG LEU THR ASN ALA SEQRES 7 A 319 GLY TYR ASP TYR LEU ALA LEU LYS THR LEU SER SER ARG SEQRES 8 A 319 GLN VAL VAL GLU SER VAL GLY ASN GLN MET GLY VAL GLY SEQRES 9 A 319 LYS GLU SER ASP ILE TYR ILE VAL ALA ASN GLU GLU GLY SEQRES 10 A 319 GLN GLN PHE ALA LEU LYS LEU HIS ARG LEU GLY ARG THR SEQRES 11 A 319 SER PHE ARG ASN LEU LYS ASN LYS ARG ASP TYR HIS LYS SEQRES 12 A 319 HIS ARG HIS ASN VAL SER TRP LEU TYR LEU SER ARG LEU SEQRES 13 A 319 SER ALA MET LYS GLU PHE ALA TYR MET LYS ALA LEU TYR SEQRES 14 A 319 GLU ARG LYS PHE PRO VAL PRO LYS PRO ILE ASP TYR ASN SEQRES 15 A 319 ARG HIS ALA VAL VAL MET GLU LEU ILE ASN GLY TYR PRO SEQRES 16 A 319 LEU CYS GLN ILE HIS HIS VAL GLU ASP PRO ALA SER VAL SEQRES 17 A 319 TYR ASP GLU ALA MET GLU LEU ILE VAL LYS LEU ALA ASN SEQRES 18 A 319 HIS GLY LEU ILE HIS GLY ASP PHE ASN GLU PHE ASN LEU SEQRES 19 A 319 ILE LEU ASP GLU SER ASP HIS ILE THR MET ILE ASP PHE SEQRES 20 A 319 PRO GLN MET VAL SER THR SER HIS PRO ASN ALA GLU TRP SEQRES 21 A 319 TYR PHE ASP ARG ASP VAL LYS CYS ILE LYS ASP PHE PHE SEQRES 22 A 319 MET LYS ARG PHE SER TYR GLU SER GLU LEU PHE PRO THR SEQRES 23 A 319 PHE LYS ASP ILE ARG ARG GLU ASP THR LEU ASP VAL GLU SEQRES 24 A 319 VAL SER ALA SER GLY TYR THR LYS GLU MET GLN ALA ASP SEQRES 25 A 319 ASP GLU LEU LEU HIS PRO LEU SEQRES 1 B 319 MET GLY LYS VAL ASN VAL ALA LYS LEU ARG TYR MET SER SEQRES 2 B 319 ARG ASP ASP PHE ARG VAL LEU THR ALA VAL GLU MET GLY SEQRES 3 B 319 MET LYS ASN HIS GLU ILE VAL PRO GLY SER LEU ILE ALA SEQRES 4 B 319 SER ILE ALA SER LEU LYS HIS GLY GLY CYS ASN LYS VAL SEQRES 5 B 319 LEU ARG GLU LEU VAL LYS HIS LYS LEU ILE ALA TRP GLU SEQRES 6 B 319 ARG THR LYS THR VAL GLN GLY TYR ARG LEU THR ASN ALA SEQRES 7 B 319 GLY TYR ASP TYR LEU ALA LEU LYS THR LEU SER SER ARG SEQRES 8 B 319 GLN VAL VAL GLU SER VAL GLY ASN GLN MET GLY VAL GLY SEQRES 9 B 319 LYS GLU SER ASP ILE TYR ILE VAL ALA ASN GLU GLU GLY SEQRES 10 B 319 GLN GLN PHE ALA LEU LYS LEU HIS ARG LEU GLY ARG THR SEQRES 11 B 319 SER PHE ARG ASN LEU LYS ASN LYS ARG ASP TYR HIS LYS SEQRES 12 B 319 HIS ARG HIS ASN VAL SER TRP LEU TYR LEU SER ARG LEU SEQRES 13 B 319 SER ALA MET LYS GLU PHE ALA TYR MET LYS ALA LEU TYR SEQRES 14 B 319 GLU ARG LYS PHE PRO VAL PRO LYS PRO ILE ASP TYR ASN SEQRES 15 B 319 ARG HIS ALA VAL VAL MET GLU LEU ILE ASN GLY TYR PRO SEQRES 16 B 319 LEU CYS GLN ILE HIS HIS VAL GLU ASP PRO ALA SER VAL SEQRES 17 B 319 TYR ASP GLU ALA MET GLU LEU ILE VAL LYS LEU ALA ASN SEQRES 18 B 319 HIS GLY LEU ILE HIS GLY ASP PHE ASN GLU PHE ASN LEU SEQRES 19 B 319 ILE LEU ASP GLU SER ASP HIS ILE THR MET ILE ASP PHE SEQRES 20 B 319 PRO GLN MET VAL SER THR SER HIS PRO ASN ALA GLU TRP SEQRES 21 B 319 TYR PHE ASP ARG ASP VAL LYS CYS ILE LYS ASP PHE PHE SEQRES 22 B 319 MET LYS ARG PHE SER TYR GLU SER GLU LEU PHE PRO THR SEQRES 23 B 319 PHE LYS ASP ILE ARG ARG GLU ASP THR LEU ASP VAL GLU SEQRES 24 B 319 VAL SER ALA SER GLY TYR THR LYS GLU MET GLN ALA ASP SEQRES 25 B 319 ASP GLU LEU LEU HIS PRO LEU HET 5ZH A 401 38 HET 5ZH B 401 38 HETNAM 5ZH 8-(6-METHOXYPYRIDIN-3-YL)-1-[4-PIPERAZIN-1-YL-3- HETNAM 2 5ZH (TRIFLUOROMETHYL)PHENYL]-5H-[1,2,3]TRIAZOLO[4,5- HETNAM 3 5ZH C]QUINOLIN-4-ONE FORMUL 3 5ZH 2(C26 H22 F3 N7 O2) FORMUL 5 HOH *23(H2 O) HELIX 1 AA1 SER A 13 LYS A 28 1 16 HELIX 2 AA2 PRO A 34 SER A 43 1 10 HELIX 3 AA3 GLY A 48 HIS A 59 1 12 HELIX 4 AA4 THR A 76 ARG A 91 1 16 HELIX 5 AA5 ASN A 147 GLU A 170 1 24 HELIX 6 AA6 CYS A 197 ILE A 199 5 3 HELIX 7 AA7 ASP A 204 HIS A 222 1 19 HELIX 8 AA8 ASN A 257 SER A 278 1 22 HELIX 9 AA9 THR A 286 ILE A 290 5 5 HELIX 10 AB1 ASP A 297 ASP A 313 1 17 HELIX 11 AB2 GLU A 314 HIS A 317 5 4 HELIX 12 AB3 SER B 13 MET B 27 1 15 HELIX 13 AB4 PRO B 34 SER B 43 1 10 HELIX 14 AB5 GLY B 48 HIS B 59 1 12 HELIX 15 AB6 THR B 76 ARG B 91 1 16 HELIX 16 AB7 ASN B 147 ARG B 171 1 25 HELIX 17 AB8 CYS B 197 ILE B 199 5 3 HELIX 18 AB9 ASP B 204 HIS B 222 1 19 HELIX 19 AC1 ASN B 257 SER B 278 1 22 HELIX 20 AC2 VAL B 298 ASP B 313 1 16 SHEET 1 AA1 6 ALA A 7 LYS A 8 0 SHEET 2 AA1 6 SER A 96 VAL A 103 -1 O VAL A 97 N ALA A 7 SHEET 3 AA1 6 SER A 107 ALA A 113 -1 O ILE A 111 N GLY A 98 SHEET 4 AA1 6 GLN A 119 HIS A 125 -1 O LEU A 122 N TYR A 110 SHEET 5 AA1 6 ALA A 185 MET A 188 -1 O MET A 188 N ALA A 121 SHEET 6 AA1 6 PRO A 178 ASN A 182 -1 N ASP A 180 O VAL A 187 SHEET 1 AA2 2 ILE A 62 ARG A 66 0 SHEET 2 AA2 2 GLN A 71 LEU A 75 -1 O GLY A 72 N GLU A 65 SHEET 1 AA3 3 GLY A 193 PRO A 195 0 SHEET 2 AA3 3 LEU A 234 ASP A 237 -1 O LEU A 236 N TYR A 194 SHEET 3 AA3 3 ILE A 242 MET A 244 -1 O THR A 243 N ILE A 235 SHEET 1 AA4 2 LEU A 224 ILE A 225 0 SHEET 2 AA4 2 VAL A 251 SER A 252 -1 O VAL A 251 N ILE A 225 SHEET 1 AA5 6 ALA B 7 LYS B 8 0 SHEET 2 AA5 6 SER B 96 VAL B 103 -1 O VAL B 97 N ALA B 7 SHEET 3 AA5 6 SER B 107 ALA B 113 -1 O ILE B 111 N GLY B 98 SHEET 4 AA5 6 GLN B 119 HIS B 125 -1 O LEU B 122 N TYR B 110 SHEET 5 AA5 6 ALA B 185 MET B 188 -1 O VAL B 186 N LYS B 123 SHEET 6 AA5 6 PRO B 178 ASN B 182 -1 N ASN B 182 O ALA B 185 SHEET 1 AA6 2 ILE B 62 ARG B 66 0 SHEET 2 AA6 2 GLN B 71 LEU B 75 -1 O GLY B 72 N GLU B 65 SHEET 1 AA7 3 GLY B 193 PRO B 195 0 SHEET 2 AA7 3 LEU B 234 ASP B 237 -1 O LEU B 236 N TYR B 194 SHEET 3 AA7 3 ILE B 242 MET B 244 -1 O THR B 243 N ILE B 235 SHEET 1 AA8 2 LEU B 224 ILE B 225 0 SHEET 2 AA8 2 VAL B 251 SER B 252 -1 O VAL B 251 N ILE B 225 CRYST1 70.517 93.605 110.965 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014181 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009012 0.00000