data_7VC9 # _entry.id 7VC9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7VC9 pdb_00007vc9 10.2210/pdb7vc9/pdb WWPDB D_1300024464 ? ? EMDB EMD-31889 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2022-09-07 ? 2 'EM metadata' 1 0 2022-09-07 ? 3 Image 1 0 2022-09-07 ? 4 'Primary map' 1 0 2022-09-07 ? 5 'Structure model' 1 1 2024-06-19 ? 6 Image 1 0 2022-09-07 ? 7 'Primary map' 1 0 2022-09-07 ? 8 'Structure model' 1 2 2024-09-04 ? 9 Image 1 0 2022-09-07 ? 10 'Primary map' 1 0 2022-09-07 ? 11 'Structure model' 1 3 2025-07-02 ? 12 'EM metadata' 1 1 2025-07-02 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 Image repository 'Initial release' ? ? 4 4 'Primary map' repository 'Initial release' ? ? 5 6 Image repository 'Initial release' ? ? 6 7 'Primary map' repository 'Initial release' ? ? 7 9 Image repository 'Initial release' ? ? 8 10 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 5 'Structure model' 'Data collection' 2 8 'Structure model' 'Data collection' 3 8 'Structure model' 'Database references' 4 11 'Structure model' 'Data collection' 5 11 'Structure model' 'Structure summary' 6 12 'EM metadata' 'Data processing' 7 12 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 8 'Structure model' citation 4 8 'Structure model' citation_author 5 8 'Structure model' em_admin 6 11 'Structure model' em_admin 7 11 'Structure model' em_software 8 11 'Structure model' pdbx_entry_details 9 12 'EM metadata' em_admin 10 12 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_citation.country' 2 8 'Structure model' '_citation.journal_abbrev' 3 8 'Structure model' '_citation.journal_id_ASTM' 4 8 'Structure model' '_citation.journal_id_CSD' 5 8 'Structure model' '_citation.journal_id_ISSN' 6 8 'Structure model' '_citation.journal_volume' 7 8 'Structure model' '_citation.page_first' 8 8 'Structure model' '_citation.page_last' 9 8 'Structure model' '_citation.pdbx_database_id_DOI' 10 8 'Structure model' '_citation.pdbx_database_id_PubMed' 11 8 'Structure model' '_citation.title' 12 8 'Structure model' '_citation.year' 13 8 'Structure model' '_em_admin.last_update' 14 11 'Structure model' '_em_admin.last_update' 15 11 'Structure model' '_em_software.name' 16 12 'EM metadata' '_em_admin.last_update' 17 12 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7VC9 _pdbx_database_status.recvd_initial_deposition_date 2021-09-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Tom20 subunits' _pdbx_database_related.db_id EMD-31889 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, D.S.' 1 ? 'Sui, S.F.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 119 _citation.language ? _citation.page_first e2200158119 _citation.page_last e2200158119 _citation.title 'Structural basis of Tom20 and Tom22 cytosolic domains as the human TOM complex receptors.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2200158119 _citation.pdbx_database_id_PubMed 35733257 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Su, J.' 1 0000-0002-1109-7659 primary 'Liu, D.' 2 ? primary 'Yang, F.' 3 ? primary 'Zuo, M.Q.' 4 ? primary 'Li, C.' 5 ? primary 'Dong, M.Q.' 6 0000-0002-6094-1182 primary 'Sun, S.' 7 0000-0002-9807-626X primary 'Sui, S.F.' 8 0000-0001-5253-2592 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Mitochondrial import receptor subunit TOM20 homolog' _entity.formula_weight 16319.862 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Mitochondrial 20 kDa outer membrane protein,Outer mitochondrial membrane receptor Tom20' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEEL LAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ; _entity_poly.pdbx_seq_one_letter_code_can ;MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEEL LAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ; _entity_poly.pdbx_strand_id M,N _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 GLY n 1 4 ARG n 1 5 ASN n 1 6 SER n 1 7 ALA n 1 8 ILE n 1 9 ALA n 1 10 ALA n 1 11 GLY n 1 12 VAL n 1 13 CYS n 1 14 GLY n 1 15 ALA n 1 16 LEU n 1 17 PHE n 1 18 ILE n 1 19 GLY n 1 20 TYR n 1 21 CYS n 1 22 ILE n 1 23 TYR n 1 24 PHE n 1 25 ASP n 1 26 ARG n 1 27 LYS n 1 28 ARG n 1 29 ARG n 1 30 SER n 1 31 ASP n 1 32 PRO n 1 33 ASN n 1 34 PHE n 1 35 LYS n 1 36 ASN n 1 37 ARG n 1 38 LEU n 1 39 ARG n 1 40 GLU n 1 41 ARG n 1 42 ARG n 1 43 LYS n 1 44 LYS n 1 45 GLN n 1 46 LYS n 1 47 LEU n 1 48 ALA n 1 49 LYS n 1 50 GLU n 1 51 ARG n 1 52 ALA n 1 53 GLY n 1 54 LEU n 1 55 SER n 1 56 LYS n 1 57 LEU n 1 58 PRO n 1 59 ASP n 1 60 LEU n 1 61 LYS n 1 62 ASP n 1 63 ALA n 1 64 GLU n 1 65 ALA n 1 66 VAL n 1 67 GLN n 1 68 LYS n 1 69 PHE n 1 70 PHE n 1 71 LEU n 1 72 GLU n 1 73 GLU n 1 74 ILE n 1 75 GLN n 1 76 LEU n 1 77 GLY n 1 78 GLU n 1 79 GLU n 1 80 LEU n 1 81 LEU n 1 82 ALA n 1 83 GLN n 1 84 GLY n 1 85 GLU n 1 86 TYR n 1 87 GLU n 1 88 LYS n 1 89 GLY n 1 90 VAL n 1 91 ASP n 1 92 HIS n 1 93 LEU n 1 94 THR n 1 95 ASN n 1 96 ALA n 1 97 ILE n 1 98 ALA n 1 99 VAL n 1 100 CYS n 1 101 GLY n 1 102 GLN n 1 103 PRO n 1 104 GLN n 1 105 GLN n 1 106 LEU n 1 107 LEU n 1 108 GLN n 1 109 VAL n 1 110 LEU n 1 111 GLN n 1 112 GLN n 1 113 THR n 1 114 LEU n 1 115 PRO n 1 116 PRO n 1 117 PRO n 1 118 VAL n 1 119 PHE n 1 120 GLN n 1 121 MET n 1 122 LEU n 1 123 LEU n 1 124 THR n 1 125 LYS n 1 126 LEU n 1 127 PRO n 1 128 THR n 1 129 ILE n 1 130 SER n 1 131 GLN n 1 132 ARG n 1 133 ILE n 1 134 VAL n 1 135 SER n 1 136 ALA n 1 137 GLN n 1 138 SER n 1 139 LEU n 1 140 ALA n 1 141 GLU n 1 142 ASP n 1 143 ASP n 1 144 VAL n 1 145 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 145 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TOMM20, KIAA0016' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? M . n A 1 2 VAL 2 2 ? ? ? M . n A 1 3 GLY 3 3 ? ? ? M . n A 1 4 ARG 4 4 ? ? ? M . n A 1 5 ASN 5 5 ? ? ? M . n A 1 6 SER 6 6 ? ? ? M . n A 1 7 ALA 7 7 ? ? ? M . n A 1 8 ILE 8 8 ? ? ? M . n A 1 9 ALA 9 9 ? ? ? M . n A 1 10 ALA 10 10 ? ? ? M . n A 1 11 GLY 11 11 ? ? ? M . n A 1 12 VAL 12 12 ? ? ? M . n A 1 13 CYS 13 13 ? ? ? M . n A 1 14 GLY 14 14 ? ? ? M . n A 1 15 ALA 15 15 ? ? ? M . n A 1 16 LEU 16 16 ? ? ? M . n A 1 17 PHE 17 17 ? ? ? M . n A 1 18 ILE 18 18 ? ? ? M . n A 1 19 GLY 19 19 ? ? ? M . n A 1 20 TYR 20 20 ? ? ? M . n A 1 21 CYS 21 21 ? ? ? M . n A 1 22 ILE 22 22 ? ? ? M . n A 1 23 TYR 23 23 ? ? ? M . n A 1 24 PHE 24 24 ? ? ? M . n A 1 25 ASP 25 25 ? ? ? M . n A 1 26 ARG 26 26 ? ? ? M . n A 1 27 LYS 27 27 ? ? ? M . n A 1 28 ARG 28 28 ? ? ? M . n A 1 29 ARG 29 29 ? ? ? M . n A 1 30 SER 30 30 ? ? ? M . n A 1 31 ASP 31 31 ? ? ? M . n A 1 32 PRO 32 32 ? ? ? M . n A 1 33 ASN 33 33 ? ? ? M . n A 1 34 PHE 34 34 ? ? ? M . n A 1 35 LYS 35 35 ? ? ? M . n A 1 36 ASN 36 36 ? ? ? M . n A 1 37 ARG 37 37 ? ? ? M . n A 1 38 LEU 38 38 ? ? ? M . n A 1 39 ARG 39 39 ? ? ? M . n A 1 40 GLU 40 40 ? ? ? M . n A 1 41 ARG 41 41 ? ? ? M . n A 1 42 ARG 42 42 ? ? ? M . n A 1 43 LYS 43 43 ? ? ? M . n A 1 44 LYS 44 44 ? ? ? M . n A 1 45 GLN 45 45 ? ? ? M . n A 1 46 LYS 46 46 ? ? ? M . n A 1 47 LEU 47 47 ? ? ? M . n A 1 48 ALA 48 48 ? ? ? M . n A 1 49 LYS 49 49 ? ? ? M . n A 1 50 GLU 50 50 ? ? ? M . n A 1 51 ARG 51 51 ? ? ? M . n A 1 52 ALA 52 52 ? ? ? M . n A 1 53 GLY 53 53 ? ? ? M . n A 1 54 LEU 54 54 ? ? ? M . n A 1 55 SER 55 55 55 SER SER M . n A 1 56 LYS 56 56 56 LYS LYS M . n A 1 57 LEU 57 57 57 LEU LEU M . n A 1 58 PRO 58 58 58 PRO PRO M . n A 1 59 ASP 59 59 59 ASP ASP M . n A 1 60 LEU 60 60 60 LEU LEU M . n A 1 61 LYS 61 61 61 LYS LYS M . n A 1 62 ASP 62 62 62 ASP ASP M . n A 1 63 ALA 63 63 63 ALA ALA M . n A 1 64 GLU 64 64 64 GLU GLU M . n A 1 65 ALA 65 65 65 ALA ALA M . n A 1 66 VAL 66 66 66 VAL VAL M . n A 1 67 GLN 67 67 67 GLN GLN M . n A 1 68 LYS 68 68 68 LYS LYS M . n A 1 69 PHE 69 69 69 PHE PHE M . n A 1 70 PHE 70 70 70 PHE PHE M . n A 1 71 LEU 71 71 71 LEU LEU M . n A 1 72 GLU 72 72 72 GLU GLU M . n A 1 73 GLU 73 73 73 GLU GLU M . n A 1 74 ILE 74 74 74 ILE ILE M . n A 1 75 GLN 75 75 75 GLN GLN M . n A 1 76 LEU 76 76 76 LEU LEU M . n A 1 77 GLY 77 77 77 GLY GLY M . n A 1 78 GLU 78 78 78 GLU GLU M . n A 1 79 GLU 79 79 79 GLU GLU M . n A 1 80 LEU 80 80 80 LEU LEU M . n A 1 81 LEU 81 81 81 LEU LEU M . n A 1 82 ALA 82 82 82 ALA ALA M . n A 1 83 GLN 83 83 83 GLN GLN M . n A 1 84 GLY 84 84 84 GLY GLY M . n A 1 85 GLU 85 85 85 GLU GLU M . n A 1 86 TYR 86 86 86 TYR TYR M . n A 1 87 GLU 87 87 87 GLU GLU M . n A 1 88 LYS 88 88 88 LYS LYS M . n A 1 89 GLY 89 89 89 GLY GLY M . n A 1 90 VAL 90 90 90 VAL VAL M . n A 1 91 ASP 91 91 91 ASP ASP M . n A 1 92 HIS 92 92 92 HIS HIS M . n A 1 93 LEU 93 93 93 LEU LEU M . n A 1 94 THR 94 94 94 THR THR M . n A 1 95 ASN 95 95 95 ASN ASN M . n A 1 96 ALA 96 96 96 ALA ALA M . n A 1 97 ILE 97 97 97 ILE ILE M . n A 1 98 ALA 98 98 98 ALA ALA M . n A 1 99 VAL 99 99 99 VAL VAL M . n A 1 100 CYS 100 100 100 CYS ALA M . n A 1 101 GLY 101 101 101 GLY ALA M . n A 1 102 GLN 102 102 102 GLN GLN M . n A 1 103 PRO 103 103 103 PRO PRO M . n A 1 104 GLN 104 104 104 GLN GLN M . n A 1 105 GLN 105 105 105 GLN GLN M . n A 1 106 LEU 106 106 106 LEU LEU M . n A 1 107 LEU 107 107 107 LEU LEU M . n A 1 108 GLN 108 108 108 GLN GLN M . n A 1 109 VAL 109 109 109 VAL VAL M . n A 1 110 LEU 110 110 110 LEU LEU M . n A 1 111 GLN 111 111 111 GLN GLN M . n A 1 112 GLN 112 112 112 GLN GLN M . n A 1 113 THR 113 113 113 THR THR M . n A 1 114 LEU 114 114 114 LEU LEU M . n A 1 115 PRO 115 115 115 PRO PRO M . n A 1 116 PRO 116 116 116 PRO PRO M . n A 1 117 PRO 117 117 117 PRO PRO M . n A 1 118 VAL 118 118 118 VAL VAL M . n A 1 119 PHE 119 119 119 PHE PHE M . n A 1 120 GLN 120 120 120 GLN GLN M . n A 1 121 MET 121 121 121 MET MET M . n A 1 122 LEU 122 122 122 LEU LEU M . n A 1 123 LEU 123 123 123 LEU LEU M . n A 1 124 THR 124 124 124 THR THR M . n A 1 125 LYS 125 125 125 LYS LYS M . n A 1 126 LEU 126 126 126 LEU LEU M . n A 1 127 PRO 127 127 127 PRO PRO M . n A 1 128 THR 128 128 128 THR THR M . n A 1 129 ILE 129 129 129 ILE ILE M . n A 1 130 SER 130 130 130 SER SER M . n A 1 131 GLN 131 131 131 GLN GLN M . n A 1 132 ARG 132 132 132 ARG ARG M . n A 1 133 ILE 133 133 133 ILE ILE M . n A 1 134 VAL 134 134 134 VAL VAL M . n A 1 135 SER 135 135 135 SER SER M . n A 1 136 ALA 136 136 136 ALA ALA M . n A 1 137 GLN 137 137 137 GLN GLN M . n A 1 138 SER 138 138 138 SER SER M . n A 1 139 LEU 139 139 139 LEU LEU M . n A 1 140 ALA 140 140 140 ALA ALA M . n A 1 141 GLU 141 141 141 GLU GLU M . n A 1 142 ASP 142 142 142 ASP ASP M . n A 1 143 ASP 143 143 143 ASP ASP M . n A 1 144 VAL 144 144 144 VAL VAL M . n A 1 145 GLU 145 145 145 GLU GLU M . n B 1 1 MET 1 1 ? ? ? N . n B 1 2 VAL 2 2 ? ? ? N . n B 1 3 GLY 3 3 ? ? ? N . n B 1 4 ARG 4 4 ? ? ? N . n B 1 5 ASN 5 5 ? ? ? N . n B 1 6 SER 6 6 ? ? ? N . n B 1 7 ALA 7 7 ? ? ? N . n B 1 8 ILE 8 8 ? ? ? N . n B 1 9 ALA 9 9 ? ? ? N . n B 1 10 ALA 10 10 ? ? ? N . n B 1 11 GLY 11 11 ? ? ? N . n B 1 12 VAL 12 12 ? ? ? N . n B 1 13 CYS 13 13 ? ? ? N . n B 1 14 GLY 14 14 ? ? ? N . n B 1 15 ALA 15 15 ? ? ? N . n B 1 16 LEU 16 16 ? ? ? N . n B 1 17 PHE 17 17 ? ? ? N . n B 1 18 ILE 18 18 ? ? ? N . n B 1 19 GLY 19 19 ? ? ? N . n B 1 20 TYR 20 20 ? ? ? N . n B 1 21 CYS 21 21 ? ? ? N . n B 1 22 ILE 22 22 ? ? ? N . n B 1 23 TYR 23 23 ? ? ? N . n B 1 24 PHE 24 24 ? ? ? N . n B 1 25 ASP 25 25 ? ? ? N . n B 1 26 ARG 26 26 ? ? ? N . n B 1 27 LYS 27 27 ? ? ? N . n B 1 28 ARG 28 28 ? ? ? N . n B 1 29 ARG 29 29 ? ? ? N . n B 1 30 SER 30 30 ? ? ? N . n B 1 31 ASP 31 31 ? ? ? N . n B 1 32 PRO 32 32 ? ? ? N . n B 1 33 ASN 33 33 ? ? ? N . n B 1 34 PHE 34 34 ? ? ? N . n B 1 35 LYS 35 35 ? ? ? N . n B 1 36 ASN 36 36 ? ? ? N . n B 1 37 ARG 37 37 ? ? ? N . n B 1 38 LEU 38 38 ? ? ? N . n B 1 39 ARG 39 39 ? ? ? N . n B 1 40 GLU 40 40 ? ? ? N . n B 1 41 ARG 41 41 ? ? ? N . n B 1 42 ARG 42 42 ? ? ? N . n B 1 43 LYS 43 43 ? ? ? N . n B 1 44 LYS 44 44 ? ? ? N . n B 1 45 GLN 45 45 ? ? ? N . n B 1 46 LYS 46 46 ? ? ? N . n B 1 47 LEU 47 47 ? ? ? N . n B 1 48 ALA 48 48 ? ? ? N . n B 1 49 LYS 49 49 ? ? ? N . n B 1 50 GLU 50 50 ? ? ? N . n B 1 51 ARG 51 51 ? ? ? N . n B 1 52 ALA 52 52 ? ? ? N . n B 1 53 GLY 53 53 ? ? ? N . n B 1 54 LEU 54 54 ? ? ? N . n B 1 55 SER 55 55 55 SER SER N . n B 1 56 LYS 56 56 56 LYS LYS N . n B 1 57 LEU 57 57 57 LEU LEU N . n B 1 58 PRO 58 58 58 PRO PRO N . n B 1 59 ASP 59 59 59 ASP ASP N . n B 1 60 LEU 60 60 60 LEU LEU N . n B 1 61 LYS 61 61 61 LYS LYS N . n B 1 62 ASP 62 62 62 ASP ASP N . n B 1 63 ALA 63 63 63 ALA ALA N . n B 1 64 GLU 64 64 64 GLU GLU N . n B 1 65 ALA 65 65 65 ALA ALA N . n B 1 66 VAL 66 66 66 VAL VAL N . n B 1 67 GLN 67 67 67 GLN GLN N . n B 1 68 LYS 68 68 68 LYS LYS N . n B 1 69 PHE 69 69 69 PHE PHE N . n B 1 70 PHE 70 70 70 PHE PHE N . n B 1 71 LEU 71 71 71 LEU LEU N . n B 1 72 GLU 72 72 72 GLU GLU N . n B 1 73 GLU 73 73 73 GLU GLU N . n B 1 74 ILE 74 74 74 ILE ILE N . n B 1 75 GLN 75 75 75 GLN GLN N . n B 1 76 LEU 76 76 76 LEU LEU N . n B 1 77 GLY 77 77 77 GLY GLY N . n B 1 78 GLU 78 78 78 GLU GLU N . n B 1 79 GLU 79 79 79 GLU GLU N . n B 1 80 LEU 80 80 80 LEU LEU N . n B 1 81 LEU 81 81 81 LEU LEU N . n B 1 82 ALA 82 82 82 ALA ALA N . n B 1 83 GLN 83 83 83 GLN GLN N . n B 1 84 GLY 84 84 84 GLY GLY N . n B 1 85 GLU 85 85 85 GLU GLU N . n B 1 86 TYR 86 86 86 TYR TYR N . n B 1 87 GLU 87 87 87 GLU GLU N . n B 1 88 LYS 88 88 88 LYS LYS N . n B 1 89 GLY 89 89 89 GLY GLY N . n B 1 90 VAL 90 90 90 VAL VAL N . n B 1 91 ASP 91 91 91 ASP ASP N . n B 1 92 HIS 92 92 92 HIS HIS N . n B 1 93 LEU 93 93 93 LEU LEU N . n B 1 94 THR 94 94 94 THR THR N . n B 1 95 ASN 95 95 95 ASN ASN N . n B 1 96 ALA 96 96 96 ALA ALA N . n B 1 97 ILE 97 97 97 ILE ILE N . n B 1 98 ALA 98 98 98 ALA ALA N . n B 1 99 VAL 99 99 99 VAL VAL N . n B 1 100 CYS 100 100 100 CYS ALA N . n B 1 101 GLY 101 101 101 GLY ALA N . n B 1 102 GLN 102 102 102 GLN GLN N . n B 1 103 PRO 103 103 103 PRO PRO N . n B 1 104 GLN 104 104 104 GLN GLN N . n B 1 105 GLN 105 105 105 GLN GLN N . n B 1 106 LEU 106 106 106 LEU LEU N . n B 1 107 LEU 107 107 107 LEU LEU N . n B 1 108 GLN 108 108 108 GLN GLN N . n B 1 109 VAL 109 109 109 VAL VAL N . n B 1 110 LEU 110 110 110 LEU LEU N . n B 1 111 GLN 111 111 111 GLN GLN N . n B 1 112 GLN 112 112 112 GLN GLN N . n B 1 113 THR 113 113 113 THR THR N . n B 1 114 LEU 114 114 114 LEU LEU N . n B 1 115 PRO 115 115 115 PRO PRO N . n B 1 116 PRO 116 116 116 PRO PRO N . n B 1 117 PRO 117 117 117 PRO PRO N . n B 1 118 VAL 118 118 118 VAL VAL N . n B 1 119 PHE 119 119 119 PHE PHE N . n B 1 120 GLN 120 120 120 GLN GLN N . n B 1 121 MET 121 121 121 MET MET N . n B 1 122 LEU 122 122 122 LEU LEU N . n B 1 123 LEU 123 123 123 LEU LEU N . n B 1 124 THR 124 124 124 THR THR N . n B 1 125 LYS 125 125 125 LYS LYS N . n B 1 126 LEU 126 126 126 LEU LEU N . n B 1 127 PRO 127 127 127 PRO PRO N . n B 1 128 THR 128 128 128 THR THR N . n B 1 129 ILE 129 129 129 ILE ILE N . n B 1 130 SER 130 130 130 SER SER N . n B 1 131 GLN 131 131 131 GLN GLN N . n B 1 132 ARG 132 132 132 ARG ARG N . n B 1 133 ILE 133 133 133 ILE ILE N . n B 1 134 VAL 134 134 134 VAL VAL N . n B 1 135 SER 135 135 135 SER SER N . n B 1 136 ALA 136 136 136 ALA ALA N . n B 1 137 GLN 137 137 137 GLN GLN N . n B 1 138 SER 138 138 138 SER SER N . n B 1 139 LEU 139 139 139 LEU LEU N . n B 1 140 ALA 140 140 140 ALA ALA N . n B 1 141 GLU 141 141 141 GLU GLU N . n B 1 142 ASP 142 142 142 ASP ASP N . n B 1 143 ASP 143 143 143 ASP ASP N . n B 1 144 VAL 144 144 144 VAL VAL N . n B 1 145 GLU 145 145 145 GLU GLU N . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 M CYS 100 ? SG ? A CYS 100 SG 2 1 Y 1 N CYS 100 ? SG ? B CYS 100 SG # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7VC9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7VC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7VC9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7VC9 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.008 ? 1438 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.371 ? 1956 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 9.291 ? 186 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.061 ? 236 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.011 ? 260 ? f_plane_restr ? ? # _struct.entry_id 7VC9 _struct.title 'Tom20 subunits' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7VC9 _struct_keywords.text 'Tom20, Cryo-EM, TRANSLOCASE' _struct_keywords.pdbx_keywords TRANSLOCASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TOM20_HUMAN _struct_ref.pdbx_db_accession Q15388 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEEL LAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7VC9 M 1 ? 145 ? Q15388 1 ? 145 ? 1 145 2 1 7VC9 N 1 ? 145 ? Q15388 1 ? 145 ? 1 145 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 15060 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 63 ? ALA A 82 ? ALA M 63 ALA M 82 1 ? 20 HELX_P HELX_P2 AA2 GLN A 83 ? ALA A 96 ? GLN M 83 ALA M 96 1 ? 14 HELX_P HELX_P3 AA3 GLY A 101 ? GLN A 105 ? GLY M 101 GLN M 105 5 ? 5 HELX_P HELX_P4 AA4 LEU A 106 ? LEU A 114 ? LEU M 106 LEU M 114 1 ? 9 HELX_P HELX_P5 AA5 THR A 124 ? GLU A 145 ? THR M 124 GLU M 145 1 ? 22 HELX_P HELX_P6 AA6 ALA B 63 ? ALA B 82 ? ALA N 63 ALA N 82 1 ? 20 HELX_P HELX_P7 AA7 GLY B 84 ? VAL B 99 ? GLY N 84 VAL N 99 1 ? 16 HELX_P HELX_P8 AA8 GLY B 101 ? LEU B 114 ? GLY N 101 LEU N 114 1 ? 14 HELX_P HELX_P9 AA9 MET B 121 ? GLU B 145 ? MET N 121 GLU N 145 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 7VC9 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO M 117 ? ? -69.43 -170.75 2 1 GLN M 120 ? ? 81.42 2.12 3 1 PRO N 117 ? ? -53.97 -168.87 # _em_3d_fitting.entry_id 7VC9 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7VC9 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 347600 _em_3d_reconstruction.resolution 13 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'The translocase of the outer mitochondrial membrane of Tom20 subunit' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7VC9 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7VC9 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7VC9 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 M MET 1 ? A MET 1 2 1 Y 1 M VAL 2 ? A VAL 2 3 1 Y 1 M GLY 3 ? A GLY 3 4 1 Y 1 M ARG 4 ? A ARG 4 5 1 Y 1 M ASN 5 ? A ASN 5 6 1 Y 1 M SER 6 ? A SER 6 7 1 Y 1 M ALA 7 ? A ALA 7 8 1 Y 1 M ILE 8 ? A ILE 8 9 1 Y 1 M ALA 9 ? A ALA 9 10 1 Y 1 M ALA 10 ? A ALA 10 11 1 Y 1 M GLY 11 ? A GLY 11 12 1 Y 1 M VAL 12 ? A VAL 12 13 1 Y 1 M CYS 13 ? A CYS 13 14 1 Y 1 M GLY 14 ? A GLY 14 15 1 Y 1 M ALA 15 ? A ALA 15 16 1 Y 1 M LEU 16 ? A LEU 16 17 1 Y 1 M PHE 17 ? A PHE 17 18 1 Y 1 M ILE 18 ? A ILE 18 19 1 Y 1 M GLY 19 ? A GLY 19 20 1 Y 1 M TYR 20 ? A TYR 20 21 1 Y 1 M CYS 21 ? A CYS 21 22 1 Y 1 M ILE 22 ? A ILE 22 23 1 Y 1 M TYR 23 ? A TYR 23 24 1 Y 1 M PHE 24 ? A PHE 24 25 1 Y 1 M ASP 25 ? A ASP 25 26 1 Y 1 M ARG 26 ? A ARG 26 27 1 Y 1 M LYS 27 ? A LYS 27 28 1 Y 1 M ARG 28 ? A ARG 28 29 1 Y 1 M ARG 29 ? A ARG 29 30 1 Y 1 M SER 30 ? A SER 30 31 1 Y 1 M ASP 31 ? A ASP 31 32 1 Y 1 M PRO 32 ? A PRO 32 33 1 Y 1 M ASN 33 ? A ASN 33 34 1 Y 1 M PHE 34 ? A PHE 34 35 1 Y 1 M LYS 35 ? A LYS 35 36 1 Y 1 M ASN 36 ? A ASN 36 37 1 Y 1 M ARG 37 ? A ARG 37 38 1 Y 1 M LEU 38 ? A LEU 38 39 1 Y 1 M ARG 39 ? A ARG 39 40 1 Y 1 M GLU 40 ? A GLU 40 41 1 Y 1 M ARG 41 ? A ARG 41 42 1 Y 1 M ARG 42 ? A ARG 42 43 1 Y 1 M LYS 43 ? A LYS 43 44 1 Y 1 M LYS 44 ? A LYS 44 45 1 Y 1 M GLN 45 ? A GLN 45 46 1 Y 1 M LYS 46 ? A LYS 46 47 1 Y 1 M LEU 47 ? A LEU 47 48 1 Y 1 M ALA 48 ? A ALA 48 49 1 Y 1 M LYS 49 ? A LYS 49 50 1 Y 1 M GLU 50 ? A GLU 50 51 1 Y 1 M ARG 51 ? A ARG 51 52 1 Y 1 M ALA 52 ? A ALA 52 53 1 Y 1 M GLY 53 ? A GLY 53 54 1 Y 1 M LEU 54 ? A LEU 54 55 1 Y 1 N MET 1 ? B MET 1 56 1 Y 1 N VAL 2 ? B VAL 2 57 1 Y 1 N GLY 3 ? B GLY 3 58 1 Y 1 N ARG 4 ? B ARG 4 59 1 Y 1 N ASN 5 ? B ASN 5 60 1 Y 1 N SER 6 ? B SER 6 61 1 Y 1 N ALA 7 ? B ALA 7 62 1 Y 1 N ILE 8 ? B ILE 8 63 1 Y 1 N ALA 9 ? B ALA 9 64 1 Y 1 N ALA 10 ? B ALA 10 65 1 Y 1 N GLY 11 ? B GLY 11 66 1 Y 1 N VAL 12 ? B VAL 12 67 1 Y 1 N CYS 13 ? B CYS 13 68 1 Y 1 N GLY 14 ? B GLY 14 69 1 Y 1 N ALA 15 ? B ALA 15 70 1 Y 1 N LEU 16 ? B LEU 16 71 1 Y 1 N PHE 17 ? B PHE 17 72 1 Y 1 N ILE 18 ? B ILE 18 73 1 Y 1 N GLY 19 ? B GLY 19 74 1 Y 1 N TYR 20 ? B TYR 20 75 1 Y 1 N CYS 21 ? B CYS 21 76 1 Y 1 N ILE 22 ? B ILE 22 77 1 Y 1 N TYR 23 ? B TYR 23 78 1 Y 1 N PHE 24 ? B PHE 24 79 1 Y 1 N ASP 25 ? B ASP 25 80 1 Y 1 N ARG 26 ? B ARG 26 81 1 Y 1 N LYS 27 ? B LYS 27 82 1 Y 1 N ARG 28 ? B ARG 28 83 1 Y 1 N ARG 29 ? B ARG 29 84 1 Y 1 N SER 30 ? B SER 30 85 1 Y 1 N ASP 31 ? B ASP 31 86 1 Y 1 N PRO 32 ? B PRO 32 87 1 Y 1 N ASN 33 ? B ASN 33 88 1 Y 1 N PHE 34 ? B PHE 34 89 1 Y 1 N LYS 35 ? B LYS 35 90 1 Y 1 N ASN 36 ? B ASN 36 91 1 Y 1 N ARG 37 ? B ARG 37 92 1 Y 1 N LEU 38 ? B LEU 38 93 1 Y 1 N ARG 39 ? B ARG 39 94 1 Y 1 N GLU 40 ? B GLU 40 95 1 Y 1 N ARG 41 ? B ARG 41 96 1 Y 1 N ARG 42 ? B ARG 42 97 1 Y 1 N LYS 43 ? B LYS 43 98 1 Y 1 N LYS 44 ? B LYS 44 99 1 Y 1 N GLN 45 ? B GLN 45 100 1 Y 1 N LYS 46 ? B LYS 46 101 1 Y 1 N LEU 47 ? B LEU 47 102 1 Y 1 N ALA 48 ? B ALA 48 103 1 Y 1 N LYS 49 ? B LYS 49 104 1 Y 1 N GLU 50 ? B GLU 50 105 1 Y 1 N ARG 51 ? B ARG 51 106 1 Y 1 N ALA 52 ? B ALA 52 107 1 Y 1 N GLY 53 ? B GLY 53 108 1 Y 1 N LEU 54 ? B LEU 54 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _em_admin.entry_id 7VC9 _em_admin.current_status REL _em_admin.deposition_date 2021-09-02 _em_admin.deposition_site PDBJ _em_admin.last_update 2025-07-02 _em_admin.map_release_date 2022-09-07 _em_admin.title 'Tom20 subunits' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_embedding.id 1 _em_embedding.details ? _em_embedding.specimen_id 1 _em_embedding.material Digitonin # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? PHENIX ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied YES _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Basic Research Program of China (973 Program)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 7VC9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #