data_7VCK # _entry.id 7VCK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7VCK pdb_00007vck 10.2210/pdb7vck/pdb WWPDB D_1300023911 ? ? BMRB 50986 ? 10.13018/BMR50986 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-02 2 'Structure model' 1 1 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7VCK _pdbx_database_status.recvd_initial_deposition_date 2021-09-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 50986 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yi, J.' 1 0000-0003-4811-7614 'Wan, L.' 2 0000-0003-3663-2678 'Guo, P.' 3 0000-0001-7760-5786 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Int.J.Biol.Macromol. _citation.journal_id_ASTM IJBMDR _citation.journal_id_CSD 0708 _citation.journal_id_ISSN 0141-8130 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 201 _citation.language ? _citation.page_first 607 _citation.page_last 615 _citation.title 'NMR solution structures of d(GGCCTG)n repeats associated with spinocerebellar ataxia type 36.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.ijbiomac.2022.01.097 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yi, J.' 1 ? primary 'Wan, L.' 2 ? primary 'Liu, Y.' 3 ? primary 'Lam, S.L.' 4 ? primary 'Chan, H.Y.E.' 5 ? primary 'Han, D.' 6 ? primary 'Guo, P.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*GP*CP*CP*TP*GP*GP*GP*CP*CP*TP*G)-3') ; 3695.390 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DC)(DT)(DG)(DG)(DG)(DC)(DC)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGCCTGGGCCTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DC n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DC n 1 10 DC n 1 11 DT n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DG 12 12 12 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 13 NA NA A . C 2 NA 1 102 14 NA NA A . D 2 NA 1 103 15 NA NA A . E 2 NA 1 104 16 NA NA A . F 2 NA 1 105 17 NA NA A . G 2 NA 1 106 18 NA NA A . H 2 NA 1 107 19 NA NA A . I 2 NA 1 108 20 NA NA A . J 2 NA 1 109 21 NA NA A . K 2 NA 1 110 22 NA NA A . L 2 NA 1 111 23 NA NA A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7VCK _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7VCK _struct.title 'NMR solution structures of a hairpin formed by GGCCTG repeats' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7VCK _struct_keywords.text 'DNA structure, Hairpin, GGCCTG repeats, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7VCK _struct_ref.pdbx_db_accession 7VCK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7VCK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7VCK _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1340 ? 1 MORE -112 ? 1 'SSA (A^2)' 2370 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 OP1 ? ? ? 1_555 I NA . NA ? ? A DG 2 A NA 108 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc2 metalc ? ? A DG 2 OP2 ? ? ? 1_555 I NA . NA ? ? A DG 2 A NA 108 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc3 metalc ? ? A DC 3 OP1 ? ? ? 1_555 E NA . NA ? ? A DC 3 A NA 104 1_555 ? ? ? ? ? ? ? 2.251 ? ? metalc4 metalc ? ? A DC 3 "O5'" ? ? ? 1_555 E NA . NA ? ? A DC 3 A NA 104 1_555 ? ? ? ? ? ? ? 2.636 ? ? metalc5 metalc ? ? A DC 3 OP2 ? ? ? 1_555 I NA . NA ? ? A DC 3 A NA 108 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc6 metalc ? ? A DC 4 OP2 ? ? ? 1_555 E NA . NA ? ? A DC 4 A NA 104 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc7 metalc ? ? A DC 4 O2 ? ? ? 1_555 G NA . NA ? ? A DC 4 A NA 106 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc8 metalc ? ? A DC 4 OP1 ? ? ? 1_555 L NA . NA ? ? A DC 4 A NA 111 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc9 metalc ? ? A DC 4 "O5'" ? ? ? 1_555 L NA . NA ? ? A DC 4 A NA 111 1_555 ? ? ? ? ? ? ? 2.470 ? ? metalc10 metalc ? ? A DT 5 OP1 ? ? ? 1_555 B NA . NA ? ? A DT 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc11 metalc ? ? A DT 5 O2 ? ? ? 1_555 G NA . NA ? ? A DT 5 A NA 106 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc12 metalc ? ? A DG 6 OP1 ? ? ? 1_555 B NA . NA ? ? A DG 6 A NA 101 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc13 metalc ? ? A DG 6 "O3'" ? ? ? 1_555 F NA . NA ? ? A DG 6 A NA 105 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc14 metalc ? ? A DG 6 O6 ? ? ? 1_555 G NA . NA ? ? A DG 6 A NA 106 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc15 metalc ? ? A DG 6 OP2 ? ? ? 1_555 J NA . NA ? ? A DG 6 A NA 109 1_555 ? ? ? ? ? ? ? 2.989 ? ? metalc16 metalc ? ? A DG 6 "O5'" ? ? ? 1_555 J NA . NA ? ? A DG 6 A NA 109 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc17 metalc ? ? A DG 7 OP2 ? ? ? 1_555 F NA . NA ? ? A DG 7 A NA 105 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc18 metalc ? ? A DG 7 OP1 ? ? ? 1_555 J NA . NA ? ? A DG 7 A NA 109 1_555 ? ? ? ? ? ? ? 2.190 ? ? metalc19 metalc ? ? A DG 8 OP2 ? ? ? 1_555 F NA . NA ? ? A DG 8 A NA 105 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc20 metalc ? ? A DC 9 OP2 ? ? ? 1_555 C NA . NA ? ? A DC 9 A NA 102 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc21 metalc ? ? A DC 10 OP1 ? ? ? 1_555 D NA . NA ? ? A DC 10 A NA 103 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc22 metalc ? ? A DC 10 OP2 ? ? ? 1_555 D NA . NA ? ? A DC 10 A NA 103 1_555 ? ? ? ? ? ? ? 2.274 ? ? metalc23 metalc ? ? A DC 10 O2 ? ? ? 1_555 K NA . NA ? ? A DC 10 A NA 110 1_555 ? ? ? ? ? ? ? 2.253 ? ? metalc24 metalc ? ? A DT 11 O4 ? ? ? 1_555 C NA . NA ? ? A DT 11 A NA 102 1_555 ? ? ? ? ? ? ? 2.260 ? ? metalc25 metalc ? ? A DT 11 OP2 ? ? ? 1_555 H NA . NA ? ? A DT 11 A NA 107 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc26 metalc ? ? A DT 11 "O5'" ? ? ? 1_555 H NA . NA ? ? A DT 11 A NA 107 1_555 ? ? ? ? ? ? ? 2.500 ? ? metalc27 metalc ? ? A DT 11 OP1 ? ? ? 1_555 K NA . NA ? ? A DT 11 A NA 110 1_555 ? ? ? ? ? ? ? 2.153 ? ? metalc28 metalc ? ? A DG 12 O6 ? ? ? 1_555 C NA . NA ? ? A DG 12 A NA 102 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc29 metalc ? ? A DG 12 OP2 ? ? ? 1_555 H NA . NA ? ? A DG 12 A NA 107 1_555 ? ? ? ? ? ? ? 2.161 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 10 N3 ? ? A DG 1 A DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 10 O2 ? ? A DG 1 A DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 10 N4 ? ? A DG 1 A DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 9 N3 ? ? A DG 2 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 9 O2 ? ? A DG 2 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 9 N4 ? ? A DG 2 A DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 8 N1 ? ? A DC 3 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 8 O6 ? ? A DC 3 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 8 N2 ? ? A DC 3 A DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DG 2 ? A DG 2 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 OP2 ? A DG 2 ? A DG 2 ? 1_555 63.8 ? 2 OP1 ? A DG 2 ? A DG 2 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 OP2 ? A DC 3 ? A DC 3 ? 1_555 145.0 ? 3 OP2 ? A DG 2 ? A DG 2 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 OP2 ? A DC 3 ? A DC 3 ? 1_555 112.0 ? 4 OP1 ? A DC 3 ? A DC 3 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 "O5'" ? A DC 3 ? A DC 3 ? 1_555 58.4 ? 5 OP1 ? A DC 3 ? A DC 3 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP2 ? A DC 4 ? A DC 4 ? 1_555 162.8 ? 6 "O5'" ? A DC 3 ? A DC 3 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP2 ? A DC 4 ? A DC 4 ? 1_555 104.5 ? 7 O2 ? A DC 4 ? A DC 4 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O2 ? A DT 5 ? A DT 5 ? 1_555 88.3 ? 8 O2 ? A DC 4 ? A DC 4 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 77.6 ? 9 O2 ? A DT 5 ? A DT 5 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O6 ? A DG 6 ? A DG 6 ? 1_555 138.3 ? 10 OP1 ? A DC 4 ? A DC 4 ? 1_555 NA ? L NA . ? A NA 111 ? 1_555 "O5'" ? A DC 4 ? A DC 4 ? 1_555 62.8 ? 11 OP1 ? A DT 5 ? A DT 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A DG 6 ? A DG 6 ? 1_555 149.1 ? 12 "O3'" ? A DG 6 ? A DG 6 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DG 7 ? A DG 7 ? 1_555 60.2 ? 13 "O3'" ? A DG 6 ? A DG 6 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DG 8 ? A DG 8 ? 1_555 110.0 ? 14 OP2 ? A DG 7 ? A DG 7 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DG 8 ? A DG 8 ? 1_555 140.7 ? 15 OP2 ? A DG 6 ? A DG 6 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 "O5'" ? A DG 6 ? A DG 6 ? 1_555 53.1 ? 16 OP2 ? A DG 6 ? A DG 6 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 OP1 ? A DG 7 ? A DG 7 ? 1_555 157.0 ? 17 "O5'" ? A DG 6 ? A DG 6 ? 1_555 NA ? J NA . ? A NA 109 ? 1_555 OP1 ? A DG 7 ? A DG 7 ? 1_555 105.4 ? 18 OP2 ? A DC 9 ? A DC 9 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 O4 ? A DT 11 ? A DT 11 ? 1_555 128.9 ? 19 OP2 ? A DC 9 ? A DC 9 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 96.1 ? 20 O4 ? A DT 11 ? A DT 11 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 83.5 ? 21 OP1 ? A DC 10 ? A DC 10 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP2 ? A DC 10 ? A DC 10 ? 1_555 65.9 ? 22 O2 ? A DC 10 ? A DC 10 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 OP1 ? A DT 11 ? A DT 11 ? 1_555 118.6 ? 23 OP2 ? A DT 11 ? A DT 11 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 "O5'" ? A DT 11 ? A DT 11 ? 1_555 61.7 ? 24 OP2 ? A DT 11 ? A DT 11 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP2 ? A DG 12 ? A DG 12 ? 1_555 164.1 ? 25 "O5'" ? A DT 11 ? A DT 11 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP2 ? A DG 12 ? A DG 12 ? 1_555 102.6 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.59 108.30 4.29 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.18 108.30 6.88 0.30 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.28 108.30 2.98 0.30 N 4 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 117.56 122.90 -5.34 0.60 N 5 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.96 108.30 4.66 0.30 N 6 1 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? 96.80 102.20 -5.40 0.70 N 7 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.72 108.30 5.42 0.30 N 8 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 112.53 108.30 4.23 0.30 N 9 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 116.70 108.30 8.40 0.30 N 10 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 113.74 108.30 5.44 0.30 N 11 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.51 122.90 -4.39 0.60 N 12 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.31 108.30 2.01 0.30 N 13 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.89 108.30 3.59 0.30 N 14 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 116.22 108.30 7.92 0.30 N 15 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.31 108.30 2.01 0.30 N 16 2 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 111.48 108.30 3.18 0.30 N 17 2 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.62 122.90 -4.28 0.60 N 18 2 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.94 104.50 -2.56 0.40 N 19 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 113.62 108.30 5.32 0.30 N 20 2 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? 96.41 102.20 -5.79 0.70 N 21 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 114.57 108.30 6.27 0.30 N 22 2 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 112.74 108.30 4.44 0.30 N 23 2 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.97 108.30 4.67 0.30 N 24 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 116.91 108.30 8.61 0.30 N 25 2 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.46 122.30 -3.84 0.60 N 26 2 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.98 122.90 -3.92 0.60 N 27 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.55 108.30 4.25 0.30 N 28 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 113.42 108.30 5.12 0.30 N 29 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.29 108.30 2.99 0.30 N 30 3 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.23 108.30 3.93 0.30 N 31 3 N3 A DT 5 ? ? C2 A DT 5 ? ? O2 A DT 5 ? ? 118.22 122.30 -4.08 0.60 N 32 3 "O4'" A DG 6 ? ? "C4'" A DG 6 ? ? "C3'" A DG 6 ? ? 101.80 104.50 -2.70 0.40 N 33 3 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 113.77 108.30 5.47 0.30 N 34 3 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? 95.82 102.20 -6.38 0.70 N 35 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.25 108.30 4.95 0.30 N 36 3 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 113.94 108.30 5.64 0.30 N 37 3 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 115.24 108.30 6.94 0.30 N 38 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 115.51 108.30 7.21 0.30 N 39 3 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.59 122.30 -3.71 0.60 N 40 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.93 122.90 -3.97 0.60 N 41 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.94 108.30 4.64 0.30 N 42 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.44 108.30 4.14 0.30 N 43 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.62 108.30 6.32 0.30 N 44 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.31 108.30 4.01 0.30 N 45 4 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 116.79 122.90 -6.11 0.60 N 46 4 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 103.25 108.00 -4.75 0.70 N 47 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 114.44 108.30 6.14 0.30 N 48 4 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? 97.20 102.20 -5.00 0.70 N 49 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 114.12 108.30 5.82 0.30 N 50 4 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 112.59 108.30 4.29 0.30 N 51 4 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.56 108.30 3.26 0.30 N 52 4 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 116.80 108.30 8.50 0.30 N 53 4 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.61 122.30 -3.69 0.60 N 54 4 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.04 122.90 -3.86 0.60 N 55 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.99 108.30 3.69 0.30 N 56 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.32 108.30 3.02 0.30 N 57 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 116.42 108.30 8.12 0.30 N 58 5 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.42 108.30 2.12 0.30 N 59 5 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 117.91 122.90 -4.99 0.60 N 60 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 103.38 108.00 -4.62 0.70 N 61 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 114.51 108.30 6.21 0.30 N 62 5 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? 97.32 102.20 -4.88 0.70 N 63 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.57 108.30 5.27 0.30 N 64 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 112.52 108.30 4.22 0.30 N 65 5 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 113.82 108.30 5.52 0.30 N 66 5 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 115.04 108.30 6.74 0.30 N 67 5 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.08 122.90 -3.82 0.60 N 68 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.02 108.30 3.72 0.30 N 69 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 113.24 108.30 4.94 0.30 N 70 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 115.39 108.30 7.09 0.30 N 71 6 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 116.86 122.90 -6.04 0.60 N 72 6 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.60 108.00 -5.40 0.70 N 73 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 113.68 108.30 5.38 0.30 N 74 6 "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? 97.22 102.20 -4.98 0.70 N 75 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 113.55 108.30 5.25 0.30 N 76 6 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 113.34 108.30 5.04 0.30 N 77 6 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 113.58 108.30 5.28 0.30 N 78 6 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 114.85 108.30 6.55 0.30 N 79 6 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.29 108.30 3.99 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 1 ? ? 0.122 'SIDE CHAIN' 2 1 DG A 2 ? ? 0.085 'SIDE CHAIN' 3 1 DC A 3 ? ? 0.065 'SIDE CHAIN' 4 1 DT A 5 ? ? 0.113 'SIDE CHAIN' 5 1 DG A 6 ? ? 0.056 'SIDE CHAIN' 6 1 DC A 10 ? ? 0.186 'SIDE CHAIN' 7 2 DG A 1 ? ? 0.095 'SIDE CHAIN' 8 2 DG A 2 ? ? 0.083 'SIDE CHAIN' 9 2 DT A 5 ? ? 0.101 'SIDE CHAIN' 10 2 DG A 6 ? ? 0.070 'SIDE CHAIN' 11 2 DC A 10 ? ? 0.132 'SIDE CHAIN' 12 2 DT A 11 ? ? 0.090 'SIDE CHAIN' 13 3 DG A 1 ? ? 0.108 'SIDE CHAIN' 14 3 DG A 2 ? ? 0.056 'SIDE CHAIN' 15 3 DC A 3 ? ? 0.087 'SIDE CHAIN' 16 3 DT A 5 ? ? 0.102 'SIDE CHAIN' 17 3 DG A 6 ? ? 0.076 'SIDE CHAIN' 18 3 DC A 10 ? ? 0.138 'SIDE CHAIN' 19 3 DT A 11 ? ? 0.077 'SIDE CHAIN' 20 4 DG A 1 ? ? 0.076 'SIDE CHAIN' 21 4 DG A 2 ? ? 0.076 'SIDE CHAIN' 22 4 DT A 5 ? ? 0.119 'SIDE CHAIN' 23 4 DG A 6 ? ? 0.086 'SIDE CHAIN' 24 4 DC A 10 ? ? 0.136 'SIDE CHAIN' 25 4 DT A 11 ? ? 0.120 'SIDE CHAIN' 26 5 DG A 1 ? ? 0.081 'SIDE CHAIN' 27 5 DG A 2 ? ? 0.097 'SIDE CHAIN' 28 5 DC A 3 ? ? 0.066 'SIDE CHAIN' 29 5 DT A 5 ? ? 0.122 'SIDE CHAIN' 30 5 DG A 6 ? ? 0.069 'SIDE CHAIN' 31 5 DG A 7 ? ? 0.053 'SIDE CHAIN' 32 5 DC A 10 ? ? 0.183 'SIDE CHAIN' 33 5 DT A 11 ? ? 0.097 'SIDE CHAIN' 34 5 DG A 12 ? ? 0.063 'SIDE CHAIN' 35 6 DG A 1 ? ? 0.109 'SIDE CHAIN' 36 6 DG A 2 ? ? 0.109 'SIDE CHAIN' 37 6 DC A 3 ? ? 0.074 'SIDE CHAIN' 38 6 DT A 5 ? ? 0.126 'SIDE CHAIN' 39 6 DG A 6 ? ? 0.077 'SIDE CHAIN' 40 6 DC A 10 ? ? 0.147 'SIDE CHAIN' 41 6 DT A 11 ? ? 0.115 'SIDE CHAIN' 42 6 DG A 12 ? ? 0.072 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7VCK _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7VCK _pdbx_nmr_ensemble.conformers_calculated_total_number 600 _pdbx_nmr_ensemble.conformers_submitted_total_number 6 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7VCK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.8 mM DNA, 1 mM sodium phosphate, 0.02 mM DSS, 100% D2O' _pdbx_nmr_sample_details.solvent_system '100% D2O' _pdbx_nmr_sample_details.label 1H_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 DNA 0.8 ? mM 'natural abundance' 1 'sodium phosphate' 1 ? mM 'natural abundance' 1 DSS 0.02 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 1 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.2 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.01 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H COSY' 1 isotropic # _pdbx_nmr_refine.entry_id 7VCK _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 'chemical shift assignment' TopSpin ? 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 NA NA NA N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7VCK 'a-form double helix' 7VCK 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 10 1_555 -0.257 -0.171 0.343 13.130 26.297 0.039 1 A_DG1:DC10_A A 1 ? A 10 ? 19 1 1 A DG 2 1_555 A DC 9 1_555 -0.432 -0.236 -0.367 -4.941 2.580 -0.503 2 A_DG2:DC9_A A 2 ? A 9 ? 19 1 1 A DC 3 1_555 A DG 8 1_555 0.430 -0.219 -0.039 1.305 5.084 -1.230 3 A_DC3:DG8_A A 3 ? A 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 10 1_555 A DG 2 1_555 A DC 9 1_555 -1.059 -3.420 3.876 5.378 2.487 23.064 -9.186 4.500 3.169 6.092 -13.174 23.803 1 AA_DG1DG2:DC9DC10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DG 2 1_555 A DC 9 1_555 A DC 3 1_555 A DG 8 1_555 0.228 -2.050 3.158 -1.414 6.526 27.317 -5.588 -0.766 2.593 13.563 2.939 28.106 2 AA_DG2DC3:DG8DC9_AA A 2 ? A 9 ? A 3 ? A 8 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 7VCK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_