HEADER TRANSFERASE 07-SEP-21 7VDP TITLE THE STRUCTURE OF CYCLIN-DEPENDENT KINASE 5 (CDK5) IN COMPLEX WITH P25 TITLE 2 AND COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT-LIKE KINASE 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DIVISION PROTEIN KINASE 5; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-DEPENDENT KINASE 5 ACTIVATOR 1, P25; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK5, CDKN5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDK5R1, CDK5R, NCK5A; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS CDK5, P25, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MALOJCIC,S.L.CLUGSTON,M.DANIELS,J.C.HARMANGE,M.LEDEBORER REVDAT 2 29-NOV-23 7VDP 1 REMARK REVDAT 1 09-MAR-22 7VDP 0 JRNL AUTH M.H.DANIELS,G.MALOJCIC,S.L.CLUGSTON,B.WILLIAMS, JRNL AUTH 2 M.COEFFET-LE GAL,X.R.PAN-ZHOU,S.VENKATACHALAN,J.C.HARMANGE, JRNL AUTH 3 M.LEDEBOER JRNL TITL DISCOVERY AND OPTIMIZATION OF HIGHLY SELECTIVE INHIBITORS OF JRNL TITL 2 CDK5. JRNL REF J.MED.CHEM. V. 65 3575 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35143203 JRNL DOI 10.1021/ACS.JMEDCHEM.1C02069 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 71280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5252 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6818 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 131 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7095 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6824 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9580 ; 1.356 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15734 ; 1.209 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 6.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 365 ;34.166 ;22.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1241 ;14.609 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;18.056 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 874 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7807 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1619 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 288 B 3 288 8596 0.110 0.050 REMARK 3 2 C 147 293 D 147 293 3644 0.170 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 53.0003 -47.0464 49.2382 REMARK 3 T TENSOR REMARK 3 T11: 0.3111 T22: 0.1822 REMARK 3 T33: 0.3124 T12: 0.0424 REMARK 3 T13: 0.0310 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 8.8457 L22: 8.1545 REMARK 3 L33: 11.9569 L12: 1.5970 REMARK 3 L13: 4.1195 L23: 2.1838 REMARK 3 S TENSOR REMARK 3 S11: 0.1499 S12: -0.1396 S13: -0.4359 REMARK 3 S21: 0.2947 S22: -0.1133 S23: -0.3558 REMARK 3 S31: 0.5869 S32: 0.3411 S33: -0.0365 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4152 -32.6848 54.0720 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.0849 REMARK 3 T33: 0.0574 T12: -0.0130 REMARK 3 T13: -0.0353 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.1931 L22: 2.6997 REMARK 3 L33: 1.7711 L12: 0.9219 REMARK 3 L13: -0.2959 L23: 0.4117 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: -0.0628 S13: -0.3140 REMARK 3 S21: 0.0868 S22: 0.0644 S23: -0.1722 REMARK 3 S31: 0.2312 S32: 0.0249 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): 52.8944 -13.3449 65.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.0236 REMARK 3 T33: 0.0924 T12: 0.0077 REMARK 3 T13: -0.0533 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.3090 L22: 1.8919 REMARK 3 L33: 4.5740 L12: -0.0252 REMARK 3 L13: 1.0863 L23: 0.7147 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: -0.1135 S13: 0.0968 REMARK 3 S21: 0.1126 S22: 0.0772 S23: -0.0012 REMARK 3 S31: -0.1650 S32: -0.0835 S33: 0.0162 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 31 REMARK 3 ORIGIN FOR THE GROUP (A): 57.9523 -44.1170 77.7914 REMARK 3 T TENSOR REMARK 3 T11: 0.9277 T22: 1.4582 REMARK 3 T33: 1.0398 T12: 0.4469 REMARK 3 T13: 0.2152 T23: 0.1785 REMARK 3 L TENSOR REMARK 3 L11: 7.3236 L22: 7.1313 REMARK 3 L33: 4.9310 L12: 5.2717 REMARK 3 L13: 1.2657 L23: -3.0527 REMARK 3 S TENSOR REMARK 3 S11: 0.9340 S12: -1.4363 S13: 0.2244 REMARK 3 S21: 0.7649 S22: -0.3907 S23: 0.5804 REMARK 3 S31: 0.0919 S32: -1.0587 S33: -0.5433 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 32 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 66.6368 -52.7344 70.5765 REMARK 3 T TENSOR REMARK 3 T11: 0.7108 T22: 0.9184 REMARK 3 T33: 0.7047 T12: 0.2781 REMARK 3 T13: 0.2217 T23: 0.4496 REMARK 3 L TENSOR REMARK 3 L11: 6.6572 L22: 4.9810 REMARK 3 L33: 2.8423 L12: 3.8920 REMARK 3 L13: 0.0238 L23: 2.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.4116 S12: -1.0873 S13: -0.8597 REMARK 3 S21: 0.4029 S22: 0.0112 S23: 0.3369 REMARK 3 S31: 0.4933 S32: -0.2691 S33: 0.4004 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 75 B 219 REMARK 3 ORIGIN FOR THE GROUP (A): 76.3641 -40.0691 60.2775 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.3455 REMARK 3 T33: 0.1609 T12: 0.1143 REMARK 3 T13: -0.0098 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 4.8212 L22: 3.6058 REMARK 3 L33: 3.0136 L12: -2.3003 REMARK 3 L13: -0.7895 L23: 0.8742 REMARK 3 S TENSOR REMARK 3 S11: -0.4282 S12: -0.6686 S13: -0.2069 REMARK 3 S21: 0.4625 S22: 0.4210 S23: 0.0852 REMARK 3 S31: 0.3123 S32: 0.2166 S33: 0.0072 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 220 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 86.9281 -40.4014 40.1393 REMARK 3 T TENSOR REMARK 3 T11: 0.3383 T22: 0.5242 REMARK 3 T33: 0.3679 T12: 0.0214 REMARK 3 T13: -0.0083 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 2.0070 L22: 8.3721 REMARK 3 L33: 5.0122 L12: -3.5096 REMARK 3 L13: -1.0914 L23: -0.9999 REMARK 3 S TENSOR REMARK 3 S11: 0.2832 S12: 0.1163 S13: 0.5483 REMARK 3 S21: -0.4909 S22: -0.1689 S23: -0.9301 REMARK 3 S31: -0.4209 S32: 0.2980 S33: -0.1143 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 288 REMARK 3 ORIGIN FOR THE GROUP (A): 89.2194 -32.5653 58.9483 REMARK 3 T TENSOR REMARK 3 T11: 0.1849 T22: 0.5221 REMARK 3 T33: 0.4890 T12: 0.0747 REMARK 3 T13: -0.0600 T23: -0.2159 REMARK 3 L TENSOR REMARK 3 L11: 3.2994 L22: 7.4194 REMARK 3 L33: 4.6085 L12: 0.4001 REMARK 3 L13: 0.1061 L23: 4.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: -0.4137 S13: 0.8712 REMARK 3 S21: 0.0739 S22: 0.3462 S23: -0.5637 REMARK 3 S31: -0.4530 S32: 0.7022 S33: -0.2438 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 146 C 162 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8839 -38.1347 73.2412 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.3034 REMARK 3 T33: 0.1368 T12: -0.0222 REMARK 3 T13: 0.0921 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 5.1487 L22: 8.6328 REMARK 3 L33: 5.9729 L12: 3.2864 REMARK 3 L13: 4.1531 L23: 3.5700 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.3379 S13: 0.5252 REMARK 3 S21: 0.2973 S22: -0.1384 S23: 0.6169 REMARK 3 S31: -0.4817 S32: -0.4386 S33: 0.0945 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 163 C 170 REMARK 3 ORIGIN FOR THE GROUP (A): 12.0507 -52.8243 69.5277 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2580 REMARK 3 T33: 0.1427 T12: -0.0784 REMARK 3 T13: 0.0512 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 2.1061 L22: 1.2047 REMARK 3 L33: 8.5459 L12: -1.5705 REMARK 3 L13: 0.7703 L23: -0.7726 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: -0.2986 S13: -0.2111 REMARK 3 S21: -0.0040 S22: 0.2438 S23: 0.2098 REMARK 3 S31: 0.2502 S32: -0.3163 S33: -0.3428 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 171 C 187 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7900 -43.5341 79.7139 REMARK 3 T TENSOR REMARK 3 T11: 0.2906 T22: 0.2703 REMARK 3 T33: 0.1221 T12: -0.0496 REMARK 3 T13: -0.0071 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 8.3555 L22: 2.4805 REMARK 3 L33: 0.4268 L12: 1.8105 REMARK 3 L13: 1.7259 L23: 0.5577 REMARK 3 S TENSOR REMARK 3 S11: -0.1564 S12: -0.2990 S13: -0.0415 REMARK 3 S21: 0.0999 S22: 0.0973 S23: -0.0273 REMARK 3 S31: -0.0832 S32: -0.0295 S33: 0.0591 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 188 C 197 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7255 -37.1140 78.4856 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.3012 REMARK 3 T33: 0.1847 T12: -0.0681 REMARK 3 T13: -0.0030 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 6.8049 L22: 5.5105 REMARK 3 L33: 2.6485 L12: -3.4609 REMARK 3 L13: 2.7884 L23: -1.9114 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.1531 S13: 0.1321 REMARK 3 S21: 0.2108 S22: 0.0365 S23: -0.2519 REMARK 3 S31: -0.0996 S32: 0.1207 S33: -0.0372 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 198 C 237 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7024 -42.2346 66.9253 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.1616 REMARK 3 T33: 0.0037 T12: -0.0548 REMARK 3 T13: 0.0029 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.6739 L22: 3.3012 REMARK 3 L33: 1.1922 L12: 2.3947 REMARK 3 L13: 0.0421 L23: -0.4250 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: -0.0613 S13: 0.0041 REMARK 3 S21: 0.0455 S22: -0.0409 S23: 0.0450 REMARK 3 S31: -0.0982 S32: -0.0550 S33: -0.0591 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 238 C 245 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1054 -39.0373 71.7298 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.4256 REMARK 3 T33: 0.2253 T12: -0.0830 REMARK 3 T13: -0.0098 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.6860 L22: 8.1223 REMARK 3 L33: 3.5884 L12: 2.3973 REMARK 3 L13: 0.2383 L23: -0.9647 REMARK 3 S TENSOR REMARK 3 S11: -0.2876 S12: 0.1513 S13: -0.0715 REMARK 3 S21: -0.3859 S22: 0.2501 S23: -0.6673 REMARK 3 S31: -0.4419 S32: 0.4714 S33: 0.0376 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 246 C 277 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3891 -44.1877 62.3615 REMARK 3 T TENSOR REMARK 3 T11: 0.1125 T22: 0.1920 REMARK 3 T33: 0.0889 T12: -0.0401 REMARK 3 T13: 0.0180 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.4404 L22: 4.2972 REMARK 3 L33: 4.5536 L12: 2.1932 REMARK 3 L13: -0.3581 L23: -1.2266 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: -0.0916 S13: -0.4194 REMARK 3 S21: -0.3772 S22: 0.0702 S23: -0.2901 REMARK 3 S31: 0.6371 S32: 0.0820 S33: 0.0437 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 278 C 293 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5161 -28.2080 65.9425 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.2120 REMARK 3 T33: 0.2894 T12: 0.0712 REMARK 3 T13: 0.0463 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 7.3248 L22: 6.2691 REMARK 3 L33: 7.6963 L12: 2.8602 REMARK 3 L13: -3.6903 L23: -3.5301 REMARK 3 S TENSOR REMARK 3 S11: 0.1235 S12: 0.1441 S13: 0.6890 REMARK 3 S21: 0.3077 S22: 0.1480 S23: 0.8269 REMARK 3 S31: -0.3363 S32: -0.3732 S33: -0.2715 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 147 D 173 REMARK 3 ORIGIN FOR THE GROUP (A): 74.1048 -84.9181 61.5380 REMARK 3 T TENSOR REMARK 3 T11: 1.2581 T22: 1.2354 REMARK 3 T33: 1.3236 T12: 0.0781 REMARK 3 T13: 0.1245 T23: 0.1262 REMARK 3 L TENSOR REMARK 3 L11: 2.9615 L22: 0.0122 REMARK 3 L33: 1.4921 L12: -0.0228 REMARK 3 L13: 2.0539 L23: -0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.2228 S12: 0.4687 S13: -0.1494 REMARK 3 S21: 0.0604 S22: 0.0577 S23: -0.0747 REMARK 3 S31: 0.1765 S32: 0.0876 S33: -0.2805 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 174 D 197 REMARK 3 ORIGIN FOR THE GROUP (A): 68.7993 -71.4070 50.9516 REMARK 3 T TENSOR REMARK 3 T11: 1.4164 T22: 0.9482 REMARK 3 T33: 1.5392 T12: -0.3795 REMARK 3 T13: 0.0771 T23: -0.1272 REMARK 3 L TENSOR REMARK 3 L11: 5.9553 L22: 2.2613 REMARK 3 L33: 7.2326 L12: -3.4296 REMARK 3 L13: 3.4304 L23: -1.8790 REMARK 3 S TENSOR REMARK 3 S11: -0.1951 S12: -0.2802 S13: -1.2889 REMARK 3 S21: -0.2513 S22: 0.5551 S23: 0.7914 REMARK 3 S31: 1.3872 S32: -0.8442 S33: -0.3600 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 198 D 211 REMARK 3 ORIGIN FOR THE GROUP (A): 78.0607 -71.3792 65.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.7661 T22: 0.6734 REMARK 3 T33: 0.9023 T12: 0.0786 REMARK 3 T13: 0.1072 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 1.7847 L22: 1.9658 REMARK 3 L33: 2.8521 L12: 1.5691 REMARK 3 L13: 0.9956 L23: -0.2434 REMARK 3 S TENSOR REMARK 3 S11: 0.2596 S12: -0.0741 S13: -0.0788 REMARK 3 S21: 0.0426 S22: 0.0224 S23: -0.0267 REMARK 3 S31: 0.1415 S32: 0.0172 S33: -0.2820 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 212 D 234 REMARK 3 ORIGIN FOR THE GROUP (A): 66.4954 -73.7999 65.1445 REMARK 3 T TENSOR REMARK 3 T11: 1.2018 T22: 0.9677 REMARK 3 T33: 1.3960 T12: 0.0908 REMARK 3 T13: 0.1217 T23: 0.1592 REMARK 3 L TENSOR REMARK 3 L11: 1.8374 L22: 0.0719 REMARK 3 L33: 0.5017 L12: -0.2708 REMARK 3 L13: -0.9331 L23: 0.1339 REMARK 3 S TENSOR REMARK 3 S11: 0.3447 S12: 0.3357 S13: 0.6911 REMARK 3 S21: -0.1924 S22: -0.0596 S23: 0.0254 REMARK 3 S31: -0.0735 S32: -0.2851 S33: -0.2851 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 235 D 259 REMARK 3 ORIGIN FOR THE GROUP (A): 62.6957 -65.3574 61.3121 REMARK 3 T TENSOR REMARK 3 T11: 1.1929 T22: 1.1543 REMARK 3 T33: 2.4569 T12: 0.0906 REMARK 3 T13: 0.5815 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 5.0402 L22: 4.2565 REMARK 3 L33: 1.8562 L12: 4.4623 REMARK 3 L13: 2.7480 L23: 2.1763 REMARK 3 S TENSOR REMARK 3 S11: -0.2340 S12: -0.6129 S13: -1.4544 REMARK 3 S21: -0.5542 S22: 0.1330 S23: -1.6105 REMARK 3 S31: -0.0781 S32: -0.7250 S33: 0.1010 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 260 D 293 REMARK 3 ORIGIN FOR THE GROUP (A): 80.7710 -68.1006 69.0624 REMARK 3 T TENSOR REMARK 3 T11: 0.9239 T22: 0.8964 REMARK 3 T33: 1.3100 T12: 0.3439 REMARK 3 T13: -0.0308 T23: 0.3473 REMARK 3 L TENSOR REMARK 3 L11: 1.4083 L22: 7.7050 REMARK 3 L33: 2.6033 L12: 0.9717 REMARK 3 L13: -1.6806 L23: 0.6237 REMARK 3 S TENSOR REMARK 3 S11: -0.1959 S12: 0.1460 S13: -0.4783 REMARK 3 S21: 0.5493 S22: 0.0654 S23: -1.1028 REMARK 3 S31: 0.6746 S32: -0.0909 S33: 0.1305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7VDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07809 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 51.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.40 REMARK 200 R MERGE FOR SHELL (I) : 1.42300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3O0G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 5.5, 0.3M MGCL2, 20% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.58000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.79000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.79000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 13 REMARK 465 THR A 14 REMARK 465 TYR A 15 REMARK 465 PRO A 292 REMARK 465 SER B 1 REMARK 465 GLN B 2 REMARK 465 GLY B 11 REMARK 465 GLU B 12 REMARK 465 GLY B 13 REMARK 465 THR B 14 REMARK 465 ASP B 40 REMARK 465 ASP B 41 REMARK 465 GLU B 42 REMARK 465 PHE B 289 REMARK 465 CYS B 290 REMARK 465 PRO B 291 REMARK 465 PRO B 292 REMARK 465 MET C 99 REMARK 465 GLN C 100 REMARK 465 PRO C 101 REMARK 465 PRO C 102 REMARK 465 PRO C 103 REMARK 465 ALA C 104 REMARK 465 GLN C 105 REMARK 465 PRO C 106 REMARK 465 PRO C 107 REMARK 465 ALA C 108 REMARK 465 PRO C 109 REMARK 465 PRO C 110 REMARK 465 ALA C 111 REMARK 465 SER C 112 REMARK 465 GLN C 113 REMARK 465 LEU C 114 REMARK 465 SER C 115 REMARK 465 GLY C 116 REMARK 465 SER C 117 REMARK 465 GLN C 118 REMARK 465 THR C 119 REMARK 465 GLY C 120 REMARK 465 GLY C 121 REMARK 465 SER C 122 REMARK 465 SER C 123 REMARK 465 SER C 124 REMARK 465 VAL C 125 REMARK 465 LYS C 126 REMARK 465 LYS C 127 REMARK 465 ALA C 128 REMARK 465 PRO C 129 REMARK 465 HIS C 130 REMARK 465 PRO C 131 REMARK 465 ALA C 132 REMARK 465 VAL C 133 REMARK 465 THR C 134 REMARK 465 SER C 135 REMARK 465 ALA C 136 REMARK 465 GLY C 137 REMARK 465 THR C 138 REMARK 465 PRO C 139 REMARK 465 LYS C 140 REMARK 465 ARG C 141 REMARK 465 VAL C 142 REMARK 465 ILE C 143 REMARK 465 VAL C 144 REMARK 465 GLN C 145 REMARK 465 GLY C 294 REMARK 465 GLN C 295 REMARK 465 GLU C 296 REMARK 465 ASP C 297 REMARK 465 LYS C 298 REMARK 465 LYS C 299 REMARK 465 ARG C 300 REMARK 465 LEU C 301 REMARK 465 LEU C 302 REMARK 465 LEU C 303 REMARK 465 GLY C 304 REMARK 465 LEU C 305 REMARK 465 ASP C 306 REMARK 465 ARG C 307 REMARK 465 MET D 99 REMARK 465 GLN D 100 REMARK 465 PRO D 101 REMARK 465 PRO D 102 REMARK 465 PRO D 103 REMARK 465 ALA D 104 REMARK 465 GLN D 105 REMARK 465 PRO D 106 REMARK 465 PRO D 107 REMARK 465 ALA D 108 REMARK 465 PRO D 109 REMARK 465 PRO D 110 REMARK 465 ALA D 111 REMARK 465 SER D 112 REMARK 465 GLN D 113 REMARK 465 LEU D 114 REMARK 465 SER D 115 REMARK 465 GLY D 116 REMARK 465 SER D 117 REMARK 465 GLN D 118 REMARK 465 THR D 119 REMARK 465 GLY D 120 REMARK 465 GLY D 121 REMARK 465 SER D 122 REMARK 465 SER D 123 REMARK 465 SER D 124 REMARK 465 VAL D 125 REMARK 465 LYS D 126 REMARK 465 LYS D 127 REMARK 465 ALA D 128 REMARK 465 PRO D 129 REMARK 465 HIS D 130 REMARK 465 PRO D 131 REMARK 465 ALA D 132 REMARK 465 VAL D 133 REMARK 465 THR D 134 REMARK 465 SER D 135 REMARK 465 ALA D 136 REMARK 465 GLY D 137 REMARK 465 THR D 138 REMARK 465 PRO D 139 REMARK 465 LYS D 140 REMARK 465 ARG D 141 REMARK 465 VAL D 142 REMARK 465 ILE D 143 REMARK 465 VAL D 144 REMARK 465 GLN D 145 REMARK 465 ALA D 146 REMARK 465 CYS D 154 REMARK 465 LEU D 155 REMARK 465 GLY D 156 REMARK 465 GLU D 157 REMARK 465 PHE D 158 REMARK 465 LEU D 159 REMARK 465 CYS D 160 REMARK 465 ARG D 161 REMARK 465 ARG D 162 REMARK 465 CYS D 163 REMARK 465 TYR D 164 REMARK 465 SER D 214 REMARK 465 GLU D 215 REMARK 465 VAL D 216 REMARK 465 GLY D 217 REMARK 465 SER D 218 REMARK 465 GLY D 294 REMARK 465 GLN D 295 REMARK 465 GLU D 296 REMARK 465 ASP D 297 REMARK 465 LYS D 298 REMARK 465 LYS D 299 REMARK 465 ARG D 300 REMARK 465 LEU D 301 REMARK 465 LEU D 302 REMARK 465 LEU D 303 REMARK 465 GLY D 304 REMARK 465 LEU D 305 REMARK 465 ASP D 306 REMARK 465 ARG D 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 215 CG GLU C 215 CD 0.113 REMARK 500 GLU C 215 CD GLU C 215 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 -145.08 56.57 REMARK 500 LYS A 74 38.56 -99.94 REMARK 500 ASP A 126 33.01 -146.67 REMARK 500 ASP A 144 87.09 67.24 REMARK 500 VAL A 163 130.59 69.86 REMARK 500 SER A 180 -162.54 -111.17 REMARK 500 ASN A 197 -103.44 -126.47 REMARK 500 LEU A 267 48.30 -95.91 REMARK 500 ASP B 73 -136.31 54.18 REMARK 500 ASP B 126 33.08 -149.17 REMARK 500 ASP B 144 89.09 66.53 REMARK 500 VAL B 163 133.86 71.79 REMARK 500 SER B 180 -156.17 -118.89 REMARK 500 ASN B 197 -102.40 -126.44 REMARK 500 LEU B 267 55.54 -93.38 REMARK 500 HIS D 168 70.80 -116.28 REMARK 500 LEU D 169 75.35 -115.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 406 DISTANCE = 6.71 ANGSTROMS DBREF 7VDP A 2 292 UNP Q00535 CDK5_HUMAN 2 292 DBREF 7VDP B 2 292 UNP Q00535 CDK5_HUMAN 2 292 DBREF 7VDP C 100 307 UNP Q15078 CD5R1_HUMAN 100 307 DBREF 7VDP D 100 307 UNP Q15078 CD5R1_HUMAN 100 307 SEQADV 7VDP SER A 1 UNP Q00535 EXPRESSION TAG SEQADV 7VDP SER B 1 UNP Q00535 EXPRESSION TAG SEQADV 7VDP MET C 99 UNP Q15078 INITIATING METHIONINE SEQADV 7VDP MET D 99 UNP Q15078 INITIATING METHIONINE SEQRES 1 A 292 SER GLN LYS TYR GLU LYS LEU GLU LYS ILE GLY GLU GLY SEQRES 2 A 292 THR TYR GLY THR VAL PHE LYS ALA LYS ASN ARG GLU THR SEQRES 3 A 292 HIS GLU ILE VAL ALA LEU LYS ARG VAL ARG LEU ASP ASP SEQRES 4 A 292 ASP ASP GLU GLY VAL PRO SER SER ALA LEU ARG GLU ILE SEQRES 5 A 292 CYS LEU LEU LYS GLU LEU LYS HIS LYS ASN ILE VAL ARG SEQRES 6 A 292 LEU HIS ASP VAL LEU HIS SER ASP LYS LYS LEU THR LEU SEQRES 7 A 292 VAL PHE GLU PHE CYS ASP GLN ASP LEU LYS LYS TYR PHE SEQRES 8 A 292 ASP SER CYS ASN GLY ASP LEU ASP PRO GLU ILE VAL LYS SEQRES 9 A 292 SER PHE LEU PHE GLN LEU LEU LYS GLY LEU GLY PHE CYS SEQRES 10 A 292 HIS SER ARG ASN VAL LEU HIS ARG ASP LEU LYS PRO GLN SEQRES 11 A 292 ASN LEU LEU ILE ASN ARG ASN GLY GLU LEU LYS LEU ALA SEQRES 12 A 292 ASP PHE GLY LEU ALA ARG ALA PHE GLY ILE PRO VAL ARG SEQRES 13 A 292 CYS TYR SER ALA GLU VAL VAL THR LEU TRP TYR ARG PRO SEQRES 14 A 292 PRO ASP VAL LEU PHE GLY ALA LYS LEU TYR SER THR SER SEQRES 15 A 292 ILE ASP MET TRP SER ALA GLY CYS ILE PHE ALA GLU LEU SEQRES 16 A 292 ALA ASN ALA GLY ARG PRO LEU PHE PRO GLY ASN ASP VAL SEQRES 17 A 292 ASP ASP GLN LEU LYS ARG ILE PHE ARG LEU LEU GLY THR SEQRES 18 A 292 PRO THR GLU GLU GLN TRP PRO SER MET THR LYS LEU PRO SEQRES 19 A 292 ASP TYR LYS PRO TYR PRO MET TYR PRO ALA THR THR SER SEQRES 20 A 292 LEU VAL ASN VAL VAL PRO LYS LEU ASN ALA THR GLY ARG SEQRES 21 A 292 ASP LEU LEU GLN ASN LEU LEU LYS CYS ASN PRO VAL GLN SEQRES 22 A 292 ARG ILE SER ALA GLU GLU ALA LEU GLN HIS PRO TYR PHE SEQRES 23 A 292 SER ASP PHE CYS PRO PRO SEQRES 1 B 292 SER GLN LYS TYR GLU LYS LEU GLU LYS ILE GLY GLU GLY SEQRES 2 B 292 THR TYR GLY THR VAL PHE LYS ALA LYS ASN ARG GLU THR SEQRES 3 B 292 HIS GLU ILE VAL ALA LEU LYS ARG VAL ARG LEU ASP ASP SEQRES 4 B 292 ASP ASP GLU GLY VAL PRO SER SER ALA LEU ARG GLU ILE SEQRES 5 B 292 CYS LEU LEU LYS GLU LEU LYS HIS LYS ASN ILE VAL ARG SEQRES 6 B 292 LEU HIS ASP VAL LEU HIS SER ASP LYS LYS LEU THR LEU SEQRES 7 B 292 VAL PHE GLU PHE CYS ASP GLN ASP LEU LYS LYS TYR PHE SEQRES 8 B 292 ASP SER CYS ASN GLY ASP LEU ASP PRO GLU ILE VAL LYS SEQRES 9 B 292 SER PHE LEU PHE GLN LEU LEU LYS GLY LEU GLY PHE CYS SEQRES 10 B 292 HIS SER ARG ASN VAL LEU HIS ARG ASP LEU LYS PRO GLN SEQRES 11 B 292 ASN LEU LEU ILE ASN ARG ASN GLY GLU LEU LYS LEU ALA SEQRES 12 B 292 ASP PHE GLY LEU ALA ARG ALA PHE GLY ILE PRO VAL ARG SEQRES 13 B 292 CYS TYR SER ALA GLU VAL VAL THR LEU TRP TYR ARG PRO SEQRES 14 B 292 PRO ASP VAL LEU PHE GLY ALA LYS LEU TYR SER THR SER SEQRES 15 B 292 ILE ASP MET TRP SER ALA GLY CYS ILE PHE ALA GLU LEU SEQRES 16 B 292 ALA ASN ALA GLY ARG PRO LEU PHE PRO GLY ASN ASP VAL SEQRES 17 B 292 ASP ASP GLN LEU LYS ARG ILE PHE ARG LEU LEU GLY THR SEQRES 18 B 292 PRO THR GLU GLU GLN TRP PRO SER MET THR LYS LEU PRO SEQRES 19 B 292 ASP TYR LYS PRO TYR PRO MET TYR PRO ALA THR THR SER SEQRES 20 B 292 LEU VAL ASN VAL VAL PRO LYS LEU ASN ALA THR GLY ARG SEQRES 21 B 292 ASP LEU LEU GLN ASN LEU LEU LYS CYS ASN PRO VAL GLN SEQRES 22 B 292 ARG ILE SER ALA GLU GLU ALA LEU GLN HIS PRO TYR PHE SEQRES 23 B 292 SER ASP PHE CYS PRO PRO SEQRES 1 C 209 MET GLN PRO PRO PRO ALA GLN PRO PRO ALA PRO PRO ALA SEQRES 2 C 209 SER GLN LEU SER GLY SER GLN THR GLY GLY SER SER SER SEQRES 3 C 209 VAL LYS LYS ALA PRO HIS PRO ALA VAL THR SER ALA GLY SEQRES 4 C 209 THR PRO LYS ARG VAL ILE VAL GLN ALA SER THR SER GLU SEQRES 5 C 209 LEU LEU ARG CYS LEU GLY GLU PHE LEU CYS ARG ARG CYS SEQRES 6 C 209 TYR ARG LEU LYS HIS LEU SER PRO THR ASP PRO VAL LEU SEQRES 7 C 209 TRP LEU ARG SER VAL ASP ARG SER LEU LEU LEU GLN GLY SEQRES 8 C 209 TRP GLN ASP GLN GLY PHE ILE THR PRO ALA ASN VAL VAL SEQRES 9 C 209 PHE LEU TYR MET LEU CYS ARG ASP VAL ILE SER SER GLU SEQRES 10 C 209 VAL GLY SER ASP HIS GLU LEU GLN ALA VAL LEU LEU THR SEQRES 11 C 209 CYS LEU TYR LEU SER TYR SER TYR MET GLY ASN GLU ILE SEQRES 12 C 209 SER TYR PRO LEU LYS PRO PHE LEU VAL GLU SER CYS LYS SEQRES 13 C 209 GLU ALA PHE TRP ASP ARG CYS LEU SER VAL ILE ASN LEU SEQRES 14 C 209 MET SER SER LYS MET LEU GLN ILE ASN ALA ASP PRO HIS SEQRES 15 C 209 TYR PHE THR GLN VAL PHE SER ASP LEU LYS ASN GLU SER SEQRES 16 C 209 GLY GLN GLU ASP LYS LYS ARG LEU LEU LEU GLY LEU ASP SEQRES 17 C 209 ARG SEQRES 1 D 209 MET GLN PRO PRO PRO ALA GLN PRO PRO ALA PRO PRO ALA SEQRES 2 D 209 SER GLN LEU SER GLY SER GLN THR GLY GLY SER SER SER SEQRES 3 D 209 VAL LYS LYS ALA PRO HIS PRO ALA VAL THR SER ALA GLY SEQRES 4 D 209 THR PRO LYS ARG VAL ILE VAL GLN ALA SER THR SER GLU SEQRES 5 D 209 LEU LEU ARG CYS LEU GLY GLU PHE LEU CYS ARG ARG CYS SEQRES 6 D 209 TYR ARG LEU LYS HIS LEU SER PRO THR ASP PRO VAL LEU SEQRES 7 D 209 TRP LEU ARG SER VAL ASP ARG SER LEU LEU LEU GLN GLY SEQRES 8 D 209 TRP GLN ASP GLN GLY PHE ILE THR PRO ALA ASN VAL VAL SEQRES 9 D 209 PHE LEU TYR MET LEU CYS ARG ASP VAL ILE SER SER GLU SEQRES 10 D 209 VAL GLY SER ASP HIS GLU LEU GLN ALA VAL LEU LEU THR SEQRES 11 D 209 CYS LEU TYR LEU SER TYR SER TYR MET GLY ASN GLU ILE SEQRES 12 D 209 SER TYR PRO LEU LYS PRO PHE LEU VAL GLU SER CYS LYS SEQRES 13 D 209 GLU ALA PHE TRP ASP ARG CYS LEU SER VAL ILE ASN LEU SEQRES 14 D 209 MET SER SER LYS MET LEU GLN ILE ASN ALA ASP PRO HIS SEQRES 15 D 209 TYR PHE THR GLN VAL PHE SER ASP LEU LYS ASN GLU SER SEQRES 16 D 209 GLY GLN GLU ASP LYS LYS ARG LEU LEU LEU GLY LEU ASP SEQRES 17 D 209 ARG HET 65L A 301 32 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET PEG A 309 7 HET PEG A 310 7 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HET CL A 314 1 HET CL A 315 1 HET CL A 316 1 HET GOL A 317 6 HET 65L B 301 32 HET EDO C 401 4 HET EDO C 402 4 HET EDO C 403 4 HET CL C 404 1 HETNAM 65L [1-[3-FLUORANYL-4-[(2-PIPERIDIN-4-YLOXY-1,6- HETNAM 2 65L NAPHTHYRIDIN-7-YL)AMINO]PHENYL]PYRAZOL-3-YL]METHANOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 65L 2(C23 H23 F N6 O2) FORMUL 6 EDO 10(C2 H6 O2) FORMUL 13 PEG 2(C4 H10 O3) FORMUL 15 CL 7(CL 1-) FORMUL 21 GOL C3 H8 O3 FORMUL 27 HOH *372(H2 O) HELIX 1 AA1 GLY A 43 LYS A 56 1 14 HELIX 2 AA2 LEU A 87 CYS A 94 1 8 HELIX 3 AA3 ASP A 99 ARG A 120 1 22 HELIX 4 AA4 LYS A 128 GLN A 130 5 3 HELIX 5 AA5 THR A 164 ARG A 168 5 5 HELIX 6 AA6 PRO A 169 PHE A 174 1 6 HELIX 7 AA7 THR A 181 ALA A 196 1 16 HELIX 8 AA8 ASP A 207 GLY A 220 1 14 HELIX 9 AA9 SER A 229 LEU A 233 5 5 HELIX 10 AB1 ASN A 256 LEU A 267 1 12 HELIX 11 AB2 ASN A 270 ARG A 274 5 5 HELIX 12 AB3 SER A 276 GLN A 282 1 7 HELIX 13 AB4 HIS A 283 SER A 287 5 5 HELIX 14 AB5 VAL B 44 LYS B 56 1 13 HELIX 15 AB6 LEU B 87 CYS B 94 1 8 HELIX 16 AB7 ASP B 99 ARG B 120 1 22 HELIX 17 AB8 LYS B 128 GLN B 130 5 3 HELIX 18 AB9 THR B 164 ARG B 168 5 5 HELIX 19 AC1 PRO B 169 PHE B 174 1 6 HELIX 20 AC2 THR B 181 ALA B 196 1 16 HELIX 21 AC3 ASP B 207 GLY B 220 1 14 HELIX 22 AC4 TRP B 227 LEU B 233 5 7 HELIX 23 AC5 ASN B 256 LEU B 267 1 12 HELIX 24 AC6 ASN B 270 ARG B 274 5 5 HELIX 25 AC7 SER B 276 GLN B 282 1 7 HELIX 26 AC8 HIS B 283 SER B 287 5 5 HELIX 27 AC9 SER C 147 CYS C 163 1 17 HELIX 28 AD1 PRO C 171 GLN C 188 1 18 HELIX 29 AD2 THR C 197 ILE C 212 1 16 HELIX 30 AD3 SER C 218 GLY C 238 1 21 HELIX 31 AD4 LEU C 245 LEU C 249 5 5 HELIX 32 AD5 CYS C 253 ASP C 278 1 26 HELIX 33 AD6 ASP C 278 ASN C 291 1 14 HELIX 34 AD7 THR D 148 ARG D 153 1 6 HELIX 35 AD8 THR D 172 GLN D 188 1 17 HELIX 36 AD9 THR D 197 ILE D 212 1 16 HELIX 37 AE1 HIS D 220 GLY D 238 1 19 HELIX 38 AE2 LEU D 245 LEU D 249 5 5 HELIX 39 AE3 CYS D 253 ASP D 278 1 26 HELIX 40 AE4 ASP D 278 ASN D 291 1 14 SHEET 1 AA1 5 TYR A 4 GLY A 11 0 SHEET 2 AA1 5 THR A 17 ASN A 23 -1 O LYS A 20 N LEU A 7 SHEET 3 AA1 5 ILE A 29 ARG A 36 -1 O LEU A 32 N PHE A 19 SHEET 4 AA1 5 LYS A 75 GLU A 81 -1 O PHE A 80 N ALA A 31 SHEET 5 AA1 5 LEU A 66 SER A 72 -1 N LEU A 70 O THR A 77 SHEET 1 AA2 3 GLN A 85 ASP A 86 0 SHEET 2 AA2 3 LEU A 132 ILE A 134 -1 O ILE A 134 N GLN A 85 SHEET 3 AA2 3 LEU A 140 LEU A 142 -1 O LYS A 141 N LEU A 133 SHEET 1 AA3 2 VAL A 122 LEU A 123 0 SHEET 2 AA3 2 ARG A 149 ALA A 150 -1 O ARG A 149 N LEU A 123 SHEET 1 AA4 5 TYR B 4 LYS B 9 0 SHEET 2 AA4 5 THR B 17 ASN B 23 -1 O LYS B 20 N LEU B 7 SHEET 3 AA4 5 ILE B 29 ARG B 36 -1 O LEU B 32 N PHE B 19 SHEET 4 AA4 5 LYS B 75 GLU B 81 -1 O PHE B 80 N ALA B 31 SHEET 5 AA4 5 LEU B 66 SER B 72 -1 N LEU B 70 O THR B 77 SHEET 1 AA5 3 GLN B 85 ASP B 86 0 SHEET 2 AA5 3 LEU B 132 ILE B 134 -1 O ILE B 134 N GLN B 85 SHEET 3 AA5 3 LEU B 140 LEU B 142 -1 O LYS B 141 N LEU B 133 SHEET 1 AA6 2 VAL B 122 LEU B 123 0 SHEET 2 AA6 2 ARG B 149 ALA B 150 -1 O ARG B 149 N LEU B 123 CRYST1 118.370 118.370 155.370 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008448 0.004878 0.000000 0.00000 SCALE2 0.000000 0.009755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006436 0.00000