HEADER TRANSFERASE 07-SEP-21 7VDR TITLE THE STRUCTURE OF CYCLIN-DEPENDENT KINASE 5 (CDK5) IN COMPLEX WITH P25 TITLE 2 AND COMPOUND 13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT-LIKE KINASE 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DIVISION PROTEIN KINASE 5; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-DEPENDENT KINASE 5 ACTIVATOR 1, P25; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK5, CDKN5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDK5R1, CDK5R, NCK5A; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS CDK5, P25, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MALOJCIC,S.L.CLUGSTON,M.DANIELS,J.C.HARMANGE,M.LEDEBORER REVDAT 2 29-NOV-23 7VDR 1 REMARK REVDAT 1 09-MAR-22 7VDR 0 JRNL AUTH M.H.DANIELS,G.MALOJCIC,S.L.CLUGSTON,B.WILLIAMS, JRNL AUTH 2 M.COEFFET-LE GAL,X.R.PAN-ZHOU,S.VENKATACHALAN,J.C.HARMANGE, JRNL AUTH 3 M.LEDEBOER JRNL TITL DISCOVERY AND OPTIMIZATION OF HIGHLY SELECTIVE INHIBITORS OF JRNL TITL 2 CDK5. JRNL REF J.MED.CHEM. V. 65 3575 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35143203 JRNL DOI 10.1021/ACS.JMEDCHEM.1C02069 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.454 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.918 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7117 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6835 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9622 ; 1.320 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15758 ; 1.125 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 841 ; 6.306 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 366 ;34.975 ;22.049 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1245 ;16.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;18.677 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 878 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7848 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1630 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 288 B 3 288 8566 0.090 0.050 REMARK 3 2 C 147 292 D 147 292 3900 0.140 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 25 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 52.6914 -46.4363 51.9580 REMARK 3 T TENSOR REMARK 3 T11: 0.4568 T22: 0.4382 REMARK 3 T33: 0.4141 T12: -0.1133 REMARK 3 T13: 0.0254 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 11.0949 L22: 6.9333 REMARK 3 L33: 11.4504 L12: -1.4977 REMARK 3 L13: 6.3706 L23: 5.3087 REMARK 3 S TENSOR REMARK 3 S11: 0.2320 S12: -0.6433 S13: -0.2161 REMARK 3 S21: 0.7561 S22: -0.2369 S23: -0.2010 REMARK 3 S31: 0.7099 S32: 0.1963 S33: 0.0049 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3425 -33.1030 53.6487 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.0833 REMARK 3 T33: 0.0950 T12: -0.0046 REMARK 3 T13: -0.0393 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.2624 L22: 2.8340 REMARK 3 L33: 2.1100 L12: 0.6505 REMARK 3 L13: -0.3003 L23: 0.3223 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.0525 S13: -0.3504 REMARK 3 S21: 0.0528 S22: 0.0604 S23: -0.2252 REMARK 3 S31: 0.2679 S32: 0.1480 S33: -0.0206 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): 52.5322 -13.0897 65.5356 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.0221 REMARK 3 T33: 0.1231 T12: 0.0073 REMARK 3 T13: -0.0529 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 3.0937 L22: 2.1725 REMARK 3 L33: 4.5688 L12: 0.2622 REMARK 3 L13: 1.0384 L23: 0.4644 REMARK 3 S TENSOR REMARK 3 S11: -0.1176 S12: -0.0642 S13: 0.0543 REMARK 3 S21: 0.0999 S22: 0.1114 S23: -0.1014 REMARK 3 S31: -0.2219 S32: 0.0405 S33: 0.0062 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): 60.9861 -48.3584 73.6964 REMARK 3 T TENSOR REMARK 3 T11: 0.7348 T22: 1.2550 REMARK 3 T33: 0.7611 T12: 0.1852 REMARK 3 T13: 0.1327 T23: 0.2258 REMARK 3 L TENSOR REMARK 3 L11: 2.9402 L22: 4.9330 REMARK 3 L33: 3.5556 L12: 0.4078 REMARK 3 L13: 0.3140 L23: -1.3061 REMARK 3 S TENSOR REMARK 3 S11: -0.2716 S12: -1.2550 S13: -0.2427 REMARK 3 S21: 0.6945 S22: 0.0179 S23: 0.4663 REMARK 3 S31: 0.2718 S32: -0.4735 S33: 0.2537 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 66.9394 -50.0441 74.5939 REMARK 3 T TENSOR REMARK 3 T11: 0.9238 T22: 1.3109 REMARK 3 T33: 0.5852 T12: -0.0109 REMARK 3 T13: 0.0933 T23: 0.2230 REMARK 3 L TENSOR REMARK 3 L11: 2.9681 L22: 1.4915 REMARK 3 L33: 0.3430 L12: -2.0359 REMARK 3 L13: 0.0506 L23: 0.0044 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: -0.7584 S13: -0.7488 REMARK 3 S21: 0.2429 S22: 0.2487 S23: 0.5151 REMARK 3 S31: -0.0889 S32: -0.2951 S33: -0.1590 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 69.2779 -28.4435 67.4795 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 0.5977 REMARK 3 T33: 0.3197 T12: 0.1226 REMARK 3 T13: -0.0554 T23: -0.1785 REMARK 3 L TENSOR REMARK 3 L11: 4.4832 L22: 6.3314 REMARK 3 L33: 5.3562 L12: -2.8576 REMARK 3 L13: 0.2965 L23: -1.4688 REMARK 3 S TENSOR REMARK 3 S11: -0.3719 S12: -0.9188 S13: 0.4726 REMARK 3 S21: 0.7194 S22: 0.5623 S23: -0.2293 REMARK 3 S31: -0.2553 S32: 0.0449 S33: -0.1904 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 100 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 78.3080 -42.2805 66.0352 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.6551 REMARK 3 T33: 0.2796 T12: 0.2056 REMARK 3 T13: -0.0026 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 4.8998 L22: 6.6649 REMARK 3 L33: 2.3796 L12: -0.3997 REMARK 3 L13: -0.1593 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.3132 S12: -0.7929 S13: -0.1842 REMARK 3 S21: 0.5510 S22: 0.2782 S23: -0.1674 REMARK 3 S31: 0.2988 S32: 0.1427 S33: 0.0350 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 158 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): 77.3419 -40.0704 53.0516 REMARK 3 T TENSOR REMARK 3 T11: 0.0922 T22: 0.3182 REMARK 3 T33: 0.2490 T12: 0.0442 REMARK 3 T13: 0.0015 T23: -0.0634 REMARK 3 L TENSOR REMARK 3 L11: 3.9543 L22: 3.4957 REMARK 3 L33: 3.2466 L12: -3.1340 REMARK 3 L13: -0.6748 L23: 0.6597 REMARK 3 S TENSOR REMARK 3 S11: -0.1589 S12: -0.2646 S13: -0.1256 REMARK 3 S21: 0.1673 S22: 0.2820 S23: -0.0130 REMARK 3 S31: 0.2794 S32: 0.1604 S33: -0.1231 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 208 B 229 REMARK 3 ORIGIN FOR THE GROUP (A): 82.8320 -36.9660 42.6718 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.4289 REMARK 3 T33: 0.2614 T12: 0.0309 REMARK 3 T13: 0.0393 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 7.6409 L22: 5.0165 REMARK 3 L33: 1.2891 L12: -3.9589 REMARK 3 L13: 0.9090 L23: 0.2774 REMARK 3 S TENSOR REMARK 3 S11: 0.2510 S12: 1.1291 S13: 0.5977 REMARK 3 S21: -0.3215 S22: -0.4009 S23: -0.6067 REMARK 3 S31: -0.2181 S32: 0.3471 S33: 0.1499 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 230 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 84.2698 -39.7204 39.1441 REMARK 3 T TENSOR REMARK 3 T11: 0.3622 T22: 0.4336 REMARK 3 T33: 0.3030 T12: -0.0162 REMARK 3 T13: 0.0077 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.5116 L22: 10.5555 REMARK 3 L33: 1.3552 L12: -2.3727 REMARK 3 L13: -0.7791 L23: -1.3257 REMARK 3 S TENSOR REMARK 3 S11: 0.2356 S12: -0.0112 S13: 0.1338 REMARK 3 S21: 0.2582 S22: -0.2580 S23: -0.4110 REMARK 3 S31: -0.3331 S32: 0.1117 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 248 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): 86.9503 -26.1535 56.9949 REMARK 3 T TENSOR REMARK 3 T11: 0.5379 T22: 0.5277 REMARK 3 T33: 0.6112 T12: -0.0201 REMARK 3 T13: -0.0013 T23: -0.2095 REMARK 3 L TENSOR REMARK 3 L11: 9.2597 L22: 14.1067 REMARK 3 L33: 0.4614 L12: 2.2306 REMARK 3 L13: -0.9925 L23: 0.4347 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: 0.1361 S13: 1.1561 REMARK 3 S21: -0.2299 S22: 0.2847 S23: -0.3165 REMARK 3 S31: -0.4040 S32: 0.0869 S33: -0.1710 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 267 B 288 REMARK 3 ORIGIN FOR THE GROUP (A): 90.4355 -37.4030 60.1075 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 1.0140 REMARK 3 T33: 0.5181 T12: -0.0005 REMARK 3 T13: -0.0835 T23: -0.0884 REMARK 3 L TENSOR REMARK 3 L11: 6.4524 L22: 10.8569 REMARK 3 L33: 2.1160 L12: 4.1551 REMARK 3 L13: 2.7693 L23: 4.4502 REMARK 3 S TENSOR REMARK 3 S11: -0.3138 S12: -0.0941 S13: 0.6336 REMARK 3 S21: 0.8082 S22: 0.2156 S23: -0.2455 REMARK 3 S31: 0.1814 S32: 0.2779 S33: 0.0982 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 146 C 162 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7188 -37.8760 73.0837 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.3002 REMARK 3 T33: 0.2596 T12: -0.0557 REMARK 3 T13: 0.1401 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 6.2524 L22: 5.6247 REMARK 3 L33: 5.8727 L12: 3.5075 REMARK 3 L13: 3.3216 L23: 2.0899 REMARK 3 S TENSOR REMARK 3 S11: 0.2377 S12: -0.6241 S13: 0.7395 REMARK 3 S21: 0.7542 S22: -0.5354 S23: 1.1535 REMARK 3 S31: -0.3192 S32: -0.6509 S33: 0.2977 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 163 C 172 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2910 -51.2629 70.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.4041 T22: 0.4715 REMARK 3 T33: 0.2489 T12: -0.1461 REMARK 3 T13: 0.0636 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 0.1921 L22: 0.1510 REMARK 3 L33: 6.4614 L12: 0.1600 REMARK 3 L13: 1.1029 L23: 0.9163 REMARK 3 S TENSOR REMARK 3 S11: 0.1797 S12: -0.1196 S13: -0.0317 REMARK 3 S21: 0.1520 S22: -0.0141 S23: 0.0287 REMARK 3 S31: 0.6340 S32: -0.5290 S33: -0.1656 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 173 C 187 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0109 -42.9574 79.6393 REMARK 3 T TENSOR REMARK 3 T11: 0.2640 T22: 0.2749 REMARK 3 T33: 0.0687 T12: -0.0820 REMARK 3 T13: 0.0010 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 10.8424 L22: 4.6942 REMARK 3 L33: 1.3789 L12: 1.9497 REMARK 3 L13: 3.0532 L23: 0.2901 REMARK 3 S TENSOR REMARK 3 S11: 0.1486 S12: -0.5553 S13: 0.0127 REMARK 3 S21: 0.4795 S22: -0.2056 S23: -0.1482 REMARK 3 S31: 0.0624 S32: -0.0677 S33: 0.0570 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 188 C 197 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4569 -36.7017 78.2613 REMARK 3 T TENSOR REMARK 3 T11: 0.3029 T22: 0.3728 REMARK 3 T33: 0.2457 T12: -0.0383 REMARK 3 T13: -0.0638 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 6.1016 L22: 2.0133 REMARK 3 L33: 0.9982 L12: -1.6760 REMARK 3 L13: -1.9497 L23: -0.1981 REMARK 3 S TENSOR REMARK 3 S11: 0.2230 S12: 0.1331 S13: 0.2884 REMARK 3 S21: 0.2178 S22: -0.2780 S23: -0.4211 REMARK 3 S31: -0.1312 S32: 0.1210 S33: 0.0551 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 198 C 218 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2538 -39.6030 65.4656 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.1749 REMARK 3 T33: 0.0946 T12: -0.0406 REMARK 3 T13: 0.0079 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.9624 L22: 3.9905 REMARK 3 L33: 2.0078 L12: 2.7816 REMARK 3 L13: 0.7359 L23: 1.3310 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: 0.0115 S13: 0.0675 REMARK 3 S21: 0.0927 S22: 0.0045 S23: 0.0721 REMARK 3 S31: -0.2221 S32: -0.0780 S33: -0.1024 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 219 C 237 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9013 -44.3608 68.0865 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.1373 REMARK 3 T33: 0.0518 T12: -0.0549 REMARK 3 T13: -0.0539 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 4.8777 L22: 6.5578 REMARK 3 L33: 2.5504 L12: 4.5806 REMARK 3 L13: -2.7735 L23: -3.1105 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: -0.1883 S13: -0.0751 REMARK 3 S21: 0.0877 S22: 0.0503 S23: -0.0185 REMARK 3 S31: 0.0859 S32: 0.0242 S33: -0.0359 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 238 C 253 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5432 -45.5311 71.3026 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.3466 REMARK 3 T33: 0.1789 T12: -0.0571 REMARK 3 T13: -0.0088 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 7.1821 L22: 13.1640 REMARK 3 L33: 3.5190 L12: 2.2584 REMARK 3 L13: 1.6027 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0523 S13: -0.5422 REMARK 3 S21: -0.0104 S22: 0.1836 S23: -1.3453 REMARK 3 S31: -0.0937 S32: 0.3926 S33: -0.1492 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 254 C 277 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4285 -41.3065 59.1584 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.1212 REMARK 3 T33: 0.0444 T12: -0.0438 REMARK 3 T13: 0.0293 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 3.0091 L22: 8.8749 REMARK 3 L33: 4.4738 L12: 2.1820 REMARK 3 L13: -0.8112 L23: -2.5217 REMARK 3 S TENSOR REMARK 3 S11: -0.1184 S12: -0.0527 S13: -0.1515 REMARK 3 S21: -0.8198 S22: 0.1262 S23: -0.4647 REMARK 3 S31: 0.5462 S32: 0.0485 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 278 C 293 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1720 -27.9292 65.7434 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.2402 REMARK 3 T33: 0.3093 T12: 0.1279 REMARK 3 T13: 0.1216 T23: 0.0445 REMARK 3 L TENSOR REMARK 3 L11: 11.4808 L22: 4.2112 REMARK 3 L33: 5.1855 L12: 2.3714 REMARK 3 L13: -3.6458 L23: -0.1272 REMARK 3 S TENSOR REMARK 3 S11: 0.3069 S12: 0.3321 S13: 0.4928 REMARK 3 S21: 0.6533 S22: 0.1060 S23: 0.7116 REMARK 3 S31: -0.7818 S32: -0.8482 S33: -0.4130 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 147 D 187 REMARK 3 ORIGIN FOR THE GROUP (A): 71.1037 -80.0260 58.1445 REMARK 3 T TENSOR REMARK 3 T11: 1.3986 T22: 1.1640 REMARK 3 T33: 1.8756 T12: 0.0546 REMARK 3 T13: 0.1520 T23: 0.2313 REMARK 3 L TENSOR REMARK 3 L11: 0.0241 L22: 0.2717 REMARK 3 L33: 0.7123 L12: 0.0781 REMARK 3 L13: 0.1270 L23: 0.4351 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: 0.0009 S13: -0.0729 REMARK 3 S21: 0.2036 S22: 0.1393 S23: -0.1627 REMARK 3 S31: 0.3958 S32: 0.1282 S33: -0.1869 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 188 D 209 REMARK 3 ORIGIN FOR THE GROUP (A): 74.6643 -68.4376 58.0141 REMARK 3 T TENSOR REMARK 3 T11: 0.8400 T22: 0.5292 REMARK 3 T33: 1.1951 T12: 0.0839 REMARK 3 T13: 0.1190 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 4.9106 L22: 3.6593 REMARK 3 L33: 10.0444 L12: 0.7453 REMARK 3 L13: 0.9771 L23: -3.9450 REMARK 3 S TENSOR REMARK 3 S11: -0.2644 S12: 0.0812 S13: -0.6957 REMARK 3 S21: -0.2957 S22: -0.1085 S23: -0.2735 REMARK 3 S31: 0.5263 S32: 0.6361 S33: 0.3729 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 210 D 237 REMARK 3 ORIGIN FOR THE GROUP (A): 67.1167 -72.4179 65.7350 REMARK 3 T TENSOR REMARK 3 T11: 1.3095 T22: 0.7825 REMARK 3 T33: 1.7042 T12: 0.1855 REMARK 3 T13: 0.2190 T23: 0.3611 REMARK 3 L TENSOR REMARK 3 L11: 1.4007 L22: 0.9720 REMARK 3 L33: 4.7618 L12: 1.1667 REMARK 3 L13: 2.5337 L23: 2.1081 REMARK 3 S TENSOR REMARK 3 S11: 0.3058 S12: -0.4693 S13: 0.0966 REMARK 3 S21: 0.2437 S22: -0.3982 S23: 0.0589 REMARK 3 S31: 1.0051 S32: -0.7888 S33: 0.0925 REMARK 3 REMARK 3 TLS GROUP : 25 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 238 D 293 REMARK 3 ORIGIN FOR THE GROUP (A): 72.5606 -66.7397 66.0109 REMARK 3 T TENSOR REMARK 3 T11: 1.0989 T22: 1.1114 REMARK 3 T33: 1.8171 T12: 0.2697 REMARK 3 T13: 0.2759 T23: 0.5640 REMARK 3 L TENSOR REMARK 3 L11: 0.1457 L22: 2.8632 REMARK 3 L33: 2.7147 L12: 0.4628 REMARK 3 L13: 0.4942 L23: 1.4156 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.0755 S13: -0.2809 REMARK 3 S21: 0.1370 S22: 0.1297 S23: -0.2384 REMARK 3 S31: 0.6255 S32: -0.2816 S33: -0.1252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7VDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920126 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.80 REMARK 200 R MERGE FOR SHELL (I) : 1.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3O0G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 5.5, 0.3M MGCL2, 20% REMARK 280 PEG3350, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.28667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.64333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.64333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 103.28667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 PRO A 292 REMARK 465 SER B 1 REMARK 465 GLN B 2 REMARK 465 GLY B 11 REMARK 465 GLU B 12 REMARK 465 GLY B 13 REMARK 465 THR B 14 REMARK 465 TYR B 15 REMARK 465 GLY B 16 REMARK 465 THR B 17 REMARK 465 ASP B 39 REMARK 465 ASP B 40 REMARK 465 ASP B 41 REMARK 465 GLU B 42 REMARK 465 PHE B 289 REMARK 465 CYS B 290 REMARK 465 PRO B 291 REMARK 465 PRO B 292 REMARK 465 MET C 99 REMARK 465 GLN C 100 REMARK 465 PRO C 101 REMARK 465 PRO C 102 REMARK 465 PRO C 103 REMARK 465 ALA C 104 REMARK 465 GLN C 105 REMARK 465 PRO C 106 REMARK 465 PRO C 107 REMARK 465 ALA C 108 REMARK 465 PRO C 109 REMARK 465 PRO C 110 REMARK 465 ALA C 111 REMARK 465 SER C 112 REMARK 465 GLN C 113 REMARK 465 LEU C 114 REMARK 465 SER C 115 REMARK 465 GLY C 116 REMARK 465 SER C 117 REMARK 465 GLN C 118 REMARK 465 THR C 119 REMARK 465 GLY C 120 REMARK 465 GLY C 121 REMARK 465 SER C 122 REMARK 465 SER C 123 REMARK 465 SER C 124 REMARK 465 VAL C 125 REMARK 465 LYS C 126 REMARK 465 LYS C 127 REMARK 465 ALA C 128 REMARK 465 PRO C 129 REMARK 465 HIS C 130 REMARK 465 PRO C 131 REMARK 465 ALA C 132 REMARK 465 VAL C 133 REMARK 465 THR C 134 REMARK 465 SER C 135 REMARK 465 ALA C 136 REMARK 465 GLY C 137 REMARK 465 THR C 138 REMARK 465 PRO C 139 REMARK 465 LYS C 140 REMARK 465 ARG C 141 REMARK 465 VAL C 142 REMARK 465 ILE C 143 REMARK 465 VAL C 144 REMARK 465 GLN C 145 REMARK 465 GLY C 294 REMARK 465 GLN C 295 REMARK 465 GLU C 296 REMARK 465 ASP C 297 REMARK 465 LYS C 298 REMARK 465 LYS C 299 REMARK 465 ARG C 300 REMARK 465 LEU C 301 REMARK 465 LEU C 302 REMARK 465 LEU C 303 REMARK 465 GLY C 304 REMARK 465 LEU C 305 REMARK 465 ASP C 306 REMARK 465 ARG C 307 REMARK 465 MET D 99 REMARK 465 GLN D 100 REMARK 465 PRO D 101 REMARK 465 PRO D 102 REMARK 465 PRO D 103 REMARK 465 ALA D 104 REMARK 465 GLN D 105 REMARK 465 PRO D 106 REMARK 465 PRO D 107 REMARK 465 ALA D 108 REMARK 465 PRO D 109 REMARK 465 PRO D 110 REMARK 465 ALA D 111 REMARK 465 SER D 112 REMARK 465 GLN D 113 REMARK 465 LEU D 114 REMARK 465 SER D 115 REMARK 465 GLY D 116 REMARK 465 SER D 117 REMARK 465 GLN D 118 REMARK 465 THR D 119 REMARK 465 GLY D 120 REMARK 465 GLY D 121 REMARK 465 SER D 122 REMARK 465 SER D 123 REMARK 465 SER D 124 REMARK 465 VAL D 125 REMARK 465 LYS D 126 REMARK 465 LYS D 127 REMARK 465 ALA D 128 REMARK 465 PRO D 129 REMARK 465 HIS D 130 REMARK 465 PRO D 131 REMARK 465 ALA D 132 REMARK 465 VAL D 133 REMARK 465 THR D 134 REMARK 465 SER D 135 REMARK 465 ALA D 136 REMARK 465 GLY D 137 REMARK 465 THR D 138 REMARK 465 PRO D 139 REMARK 465 LYS D 140 REMARK 465 ARG D 141 REMARK 465 VAL D 142 REMARK 465 ILE D 143 REMARK 465 VAL D 144 REMARK 465 GLN D 145 REMARK 465 ALA D 146 REMARK 465 GLY D 156 REMARK 465 GLU D 157 REMARK 465 PHE D 158 REMARK 465 LEU D 159 REMARK 465 CYS D 160 REMARK 465 ARG D 161 REMARK 465 ARG D 162 REMARK 465 VAL D 211 REMARK 465 ILE D 212 REMARK 465 SER D 213 REMARK 465 SER D 214 REMARK 465 GLY D 294 REMARK 465 GLN D 295 REMARK 465 GLU D 296 REMARK 465 ASP D 297 REMARK 465 LYS D 298 REMARK 465 LYS D 299 REMARK 465 ARG D 300 REMARK 465 LEU D 301 REMARK 465 LEU D 302 REMARK 465 LEU D 303 REMARK 465 GLY D 304 REMARK 465 LEU D 305 REMARK 465 ASP D 306 REMARK 465 ARG D 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 137.66 -173.39 REMARK 500 ASP A 73 -151.90 56.99 REMARK 500 LYS A 74 47.29 -96.63 REMARK 500 ASP A 126 34.79 -150.70 REMARK 500 ASP A 144 86.46 69.47 REMARK 500 GLU A 161 59.22 -92.67 REMARK 500 VAL A 163 135.69 71.76 REMARK 500 SER A 180 -162.93 -104.60 REMARK 500 ASN A 197 -110.39 -121.12 REMARK 500 LEU A 267 43.34 -94.99 REMARK 500 ASP B 73 -150.83 57.71 REMARK 500 LYS B 74 49.63 -96.28 REMARK 500 ASN B 121 43.02 70.03 REMARK 500 ASP B 126 33.27 -151.16 REMARK 500 ASP B 144 87.29 69.70 REMARK 500 VAL B 163 138.00 74.65 REMARK 500 SER B 180 -153.46 -113.51 REMARK 500 ASN B 197 -109.80 -120.80 REMARK 500 LEU B 248 3.55 100.89 REMARK 500 LEU B 267 47.61 -95.72 REMARK 500 SER B 287 44.50 -72.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 7VDR A 2 292 UNP Q00535 CDK5_HUMAN 2 292 DBREF 7VDR B 2 292 UNP Q00535 CDK5_HUMAN 2 292 DBREF 7VDR C 100 307 UNP Q15078 CD5R1_HUMAN 100 307 DBREF 7VDR D 100 307 UNP Q15078 CD5R1_HUMAN 100 307 SEQADV 7VDR SER A 1 UNP Q00535 EXPRESSION TAG SEQADV 7VDR SER B 1 UNP Q00535 EXPRESSION TAG SEQADV 7VDR MET C 99 UNP Q15078 INITIATING METHIONINE SEQADV 7VDR MET D 99 UNP Q15078 INITIATING METHIONINE SEQRES 1 A 292 SER GLN LYS TYR GLU LYS LEU GLU LYS ILE GLY GLU GLY SEQRES 2 A 292 THR TYR GLY THR VAL PHE LYS ALA LYS ASN ARG GLU THR SEQRES 3 A 292 HIS GLU ILE VAL ALA LEU LYS ARG VAL ARG LEU ASP ASP SEQRES 4 A 292 ASP ASP GLU GLY VAL PRO SER SER ALA LEU ARG GLU ILE SEQRES 5 A 292 CYS LEU LEU LYS GLU LEU LYS HIS LYS ASN ILE VAL ARG SEQRES 6 A 292 LEU HIS ASP VAL LEU HIS SER ASP LYS LYS LEU THR LEU SEQRES 7 A 292 VAL PHE GLU PHE CYS ASP GLN ASP LEU LYS LYS TYR PHE SEQRES 8 A 292 ASP SER CYS ASN GLY ASP LEU ASP PRO GLU ILE VAL LYS SEQRES 9 A 292 SER PHE LEU PHE GLN LEU LEU LYS GLY LEU GLY PHE CYS SEQRES 10 A 292 HIS SER ARG ASN VAL LEU HIS ARG ASP LEU LYS PRO GLN SEQRES 11 A 292 ASN LEU LEU ILE ASN ARG ASN GLY GLU LEU LYS LEU ALA SEQRES 12 A 292 ASP PHE GLY LEU ALA ARG ALA PHE GLY ILE PRO VAL ARG SEQRES 13 A 292 CYS TYR SER ALA GLU VAL VAL THR LEU TRP TYR ARG PRO SEQRES 14 A 292 PRO ASP VAL LEU PHE GLY ALA LYS LEU TYR SER THR SER SEQRES 15 A 292 ILE ASP MET TRP SER ALA GLY CYS ILE PHE ALA GLU LEU SEQRES 16 A 292 ALA ASN ALA GLY ARG PRO LEU PHE PRO GLY ASN ASP VAL SEQRES 17 A 292 ASP ASP GLN LEU LYS ARG ILE PHE ARG LEU LEU GLY THR SEQRES 18 A 292 PRO THR GLU GLU GLN TRP PRO SER MET THR LYS LEU PRO SEQRES 19 A 292 ASP TYR LYS PRO TYR PRO MET TYR PRO ALA THR THR SER SEQRES 20 A 292 LEU VAL ASN VAL VAL PRO LYS LEU ASN ALA THR GLY ARG SEQRES 21 A 292 ASP LEU LEU GLN ASN LEU LEU LYS CYS ASN PRO VAL GLN SEQRES 22 A 292 ARG ILE SER ALA GLU GLU ALA LEU GLN HIS PRO TYR PHE SEQRES 23 A 292 SER ASP PHE CYS PRO PRO SEQRES 1 B 292 SER GLN LYS TYR GLU LYS LEU GLU LYS ILE GLY GLU GLY SEQRES 2 B 292 THR TYR GLY THR VAL PHE LYS ALA LYS ASN ARG GLU THR SEQRES 3 B 292 HIS GLU ILE VAL ALA LEU LYS ARG VAL ARG LEU ASP ASP SEQRES 4 B 292 ASP ASP GLU GLY VAL PRO SER SER ALA LEU ARG GLU ILE SEQRES 5 B 292 CYS LEU LEU LYS GLU LEU LYS HIS LYS ASN ILE VAL ARG SEQRES 6 B 292 LEU HIS ASP VAL LEU HIS SER ASP LYS LYS LEU THR LEU SEQRES 7 B 292 VAL PHE GLU PHE CYS ASP GLN ASP LEU LYS LYS TYR PHE SEQRES 8 B 292 ASP SER CYS ASN GLY ASP LEU ASP PRO GLU ILE VAL LYS SEQRES 9 B 292 SER PHE LEU PHE GLN LEU LEU LYS GLY LEU GLY PHE CYS SEQRES 10 B 292 HIS SER ARG ASN VAL LEU HIS ARG ASP LEU LYS PRO GLN SEQRES 11 B 292 ASN LEU LEU ILE ASN ARG ASN GLY GLU LEU LYS LEU ALA SEQRES 12 B 292 ASP PHE GLY LEU ALA ARG ALA PHE GLY ILE PRO VAL ARG SEQRES 13 B 292 CYS TYR SER ALA GLU VAL VAL THR LEU TRP TYR ARG PRO SEQRES 14 B 292 PRO ASP VAL LEU PHE GLY ALA LYS LEU TYR SER THR SER SEQRES 15 B 292 ILE ASP MET TRP SER ALA GLY CYS ILE PHE ALA GLU LEU SEQRES 16 B 292 ALA ASN ALA GLY ARG PRO LEU PHE PRO GLY ASN ASP VAL SEQRES 17 B 292 ASP ASP GLN LEU LYS ARG ILE PHE ARG LEU LEU GLY THR SEQRES 18 B 292 PRO THR GLU GLU GLN TRP PRO SER MET THR LYS LEU PRO SEQRES 19 B 292 ASP TYR LYS PRO TYR PRO MET TYR PRO ALA THR THR SER SEQRES 20 B 292 LEU VAL ASN VAL VAL PRO LYS LEU ASN ALA THR GLY ARG SEQRES 21 B 292 ASP LEU LEU GLN ASN LEU LEU LYS CYS ASN PRO VAL GLN SEQRES 22 B 292 ARG ILE SER ALA GLU GLU ALA LEU GLN HIS PRO TYR PHE SEQRES 23 B 292 SER ASP PHE CYS PRO PRO SEQRES 1 C 209 MET GLN PRO PRO PRO ALA GLN PRO PRO ALA PRO PRO ALA SEQRES 2 C 209 SER GLN LEU SER GLY SER GLN THR GLY GLY SER SER SER SEQRES 3 C 209 VAL LYS LYS ALA PRO HIS PRO ALA VAL THR SER ALA GLY SEQRES 4 C 209 THR PRO LYS ARG VAL ILE VAL GLN ALA SER THR SER GLU SEQRES 5 C 209 LEU LEU ARG CYS LEU GLY GLU PHE LEU CYS ARG ARG CYS SEQRES 6 C 209 TYR ARG LEU LYS HIS LEU SER PRO THR ASP PRO VAL LEU SEQRES 7 C 209 TRP LEU ARG SER VAL ASP ARG SER LEU LEU LEU GLN GLY SEQRES 8 C 209 TRP GLN ASP GLN GLY PHE ILE THR PRO ALA ASN VAL VAL SEQRES 9 C 209 PHE LEU TYR MET LEU CYS ARG ASP VAL ILE SER SER GLU SEQRES 10 C 209 VAL GLY SER ASP HIS GLU LEU GLN ALA VAL LEU LEU THR SEQRES 11 C 209 CYS LEU TYR LEU SER TYR SER TYR MET GLY ASN GLU ILE SEQRES 12 C 209 SER TYR PRO LEU LYS PRO PHE LEU VAL GLU SER CYS LYS SEQRES 13 C 209 GLU ALA PHE TRP ASP ARG CYS LEU SER VAL ILE ASN LEU SEQRES 14 C 209 MET SER SER LYS MET LEU GLN ILE ASN ALA ASP PRO HIS SEQRES 15 C 209 TYR PHE THR GLN VAL PHE SER ASP LEU LYS ASN GLU SER SEQRES 16 C 209 GLY GLN GLU ASP LYS LYS ARG LEU LEU LEU GLY LEU ASP SEQRES 17 C 209 ARG SEQRES 1 D 209 MET GLN PRO PRO PRO ALA GLN PRO PRO ALA PRO PRO ALA SEQRES 2 D 209 SER GLN LEU SER GLY SER GLN THR GLY GLY SER SER SER SEQRES 3 D 209 VAL LYS LYS ALA PRO HIS PRO ALA VAL THR SER ALA GLY SEQRES 4 D 209 THR PRO LYS ARG VAL ILE VAL GLN ALA SER THR SER GLU SEQRES 5 D 209 LEU LEU ARG CYS LEU GLY GLU PHE LEU CYS ARG ARG CYS SEQRES 6 D 209 TYR ARG LEU LYS HIS LEU SER PRO THR ASP PRO VAL LEU SEQRES 7 D 209 TRP LEU ARG SER VAL ASP ARG SER LEU LEU LEU GLN GLY SEQRES 8 D 209 TRP GLN ASP GLN GLY PHE ILE THR PRO ALA ASN VAL VAL SEQRES 9 D 209 PHE LEU TYR MET LEU CYS ARG ASP VAL ILE SER SER GLU SEQRES 10 D 209 VAL GLY SER ASP HIS GLU LEU GLN ALA VAL LEU LEU THR SEQRES 11 D 209 CYS LEU TYR LEU SER TYR SER TYR MET GLY ASN GLU ILE SEQRES 12 D 209 SER TYR PRO LEU LYS PRO PHE LEU VAL GLU SER CYS LYS SEQRES 13 D 209 GLU ALA PHE TRP ASP ARG CYS LEU SER VAL ILE ASN LEU SEQRES 14 D 209 MET SER SER LYS MET LEU GLN ILE ASN ALA ASP PRO HIS SEQRES 15 D 209 TYR PHE THR GLN VAL PHE SER ASP LEU LYS ASN GLU SER SEQRES 16 D 209 GLY GLN GLU ASP LYS LYS ARG LEU LEU LEU GLY LEU ASP SEQRES 17 D 209 ARG HET 63I A 301 33 HET PGE A 302 10 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET 63I B 301 33 HET EDO C 401 4 HETNAM 63I (1R)-1-[7-[(2-FLUORANYL-4-PYRAZOL-1-YL-PHENYL)AMINO]-1, HETNAM 2 63I 6-NAPHTHYRIDIN-2-YL]-1-(1-METHYLPIPERIDIN-4-YL)ETHANOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 63I 2(C25 H27 F N6 O) FORMUL 6 PGE C6 H14 O4 FORMUL 7 EDO 9(C2 H6 O2) FORMUL 17 HOH *69(H2 O) HELIX 1 AA1 GLY A 43 LYS A 56 1 14 HELIX 2 AA2 LEU A 87 CYS A 94 1 8 HELIX 3 AA3 ASP A 99 ARG A 120 1 22 HELIX 4 AA4 LYS A 128 GLN A 130 5 3 HELIX 5 AA5 THR A 164 ARG A 168 5 5 HELIX 6 AA6 PRO A 169 PHE A 174 1 6 HELIX 7 AA7 THR A 181 ALA A 196 1 16 HELIX 8 AA8 ASP A 207 GLY A 220 1 14 HELIX 9 AA9 SER A 229 LEU A 233 5 5 HELIX 10 AB1 ASN A 256 LEU A 267 1 12 HELIX 11 AB2 ASN A 270 ARG A 274 5 5 HELIX 12 AB3 SER A 276 GLN A 282 1 7 HELIX 13 AB4 HIS A 283 SER A 287 5 5 HELIX 14 AB5 VAL B 44 LYS B 56 1 13 HELIX 15 AB6 LEU B 87 CYS B 94 1 8 HELIX 16 AB7 ASP B 99 ARG B 120 1 22 HELIX 17 AB8 LYS B 128 GLN B 130 5 3 HELIX 18 AB9 THR B 164 ARG B 168 5 5 HELIX 19 AC1 PRO B 169 PHE B 174 1 6 HELIX 20 AC2 THR B 181 ALA B 196 1 16 HELIX 21 AC3 ASP B 207 GLY B 220 1 14 HELIX 22 AC4 SER B 229 LEU B 233 5 5 HELIX 23 AC5 ASN B 256 LEU B 267 1 12 HELIX 24 AC6 ASN B 270 ARG B 274 5 5 HELIX 25 AC7 SER B 276 GLN B 282 1 7 HELIX 26 AC8 HIS B 283 SER B 287 5 5 HELIX 27 AC9 SER C 147 CYS C 163 1 17 HELIX 28 AD1 THR C 172 GLN C 188 1 17 HELIX 29 AD2 THR C 197 ILE C 212 1 16 HELIX 30 AD3 SER C 218 GLY C 238 1 21 HELIX 31 AD4 LEU C 245 LEU C 249 5 5 HELIX 32 AD5 CYS C 253 ASP C 278 1 26 HELIX 33 AD6 ASP C 278 ASN C 291 1 14 HELIX 34 AD7 THR D 148 LEU D 155 1 8 HELIX 35 AD8 THR D 172 GLN D 188 1 17 HELIX 36 AD9 THR D 197 ASP D 210 1 14 HELIX 37 AE1 SER D 218 GLY D 238 1 21 HELIX 38 AE2 LEU D 245 LEU D 249 5 5 HELIX 39 AE3 CYS D 253 ASP D 278 1 26 HELIX 40 AE4 ASP D 278 ASN D 291 1 14 SHEET 1 AA1 5 TYR A 4 GLU A 12 0 SHEET 2 AA1 5 THR A 17 ASN A 23 -1 O LYS A 20 N LEU A 7 SHEET 3 AA1 5 ILE A 29 ARG A 36 -1 O LEU A 32 N PHE A 19 SHEET 4 AA1 5 LYS A 75 GLU A 81 -1 O PHE A 80 N ALA A 31 SHEET 5 AA1 5 LEU A 66 SER A 72 -1 N ASP A 68 O VAL A 79 SHEET 1 AA2 3 GLN A 85 ASP A 86 0 SHEET 2 AA2 3 LEU A 132 ILE A 134 -1 O ILE A 134 N GLN A 85 SHEET 3 AA2 3 LEU A 140 LEU A 142 -1 O LYS A 141 N LEU A 133 SHEET 1 AA3 2 VAL A 122 LEU A 123 0 SHEET 2 AA3 2 ARG A 149 ALA A 150 -1 O ARG A 149 N LEU A 123 SHEET 1 AA4 5 TYR B 4 GLU B 8 0 SHEET 2 AA4 5 PHE B 19 ASN B 23 -1 O LYS B 20 N LEU B 7 SHEET 3 AA4 5 ILE B 29 ARG B 36 -1 O LEU B 32 N PHE B 19 SHEET 4 AA4 5 LYS B 75 GLU B 81 -1 O PHE B 80 N ALA B 31 SHEET 5 AA4 5 LEU B 66 SER B 72 -1 N ASP B 68 O VAL B 79 SHEET 1 AA5 3 GLN B 85 ASP B 86 0 SHEET 2 AA5 3 LEU B 132 ILE B 134 -1 O ILE B 134 N GLN B 85 SHEET 3 AA5 3 LEU B 140 LEU B 142 -1 O LYS B 141 N LEU B 133 SHEET 1 AA6 2 VAL B 122 LEU B 123 0 SHEET 2 AA6 2 ARG B 149 ALA B 150 -1 O ARG B 149 N LEU B 123 CRYST1 117.830 117.830 154.930 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008487 0.004900 0.000000 0.00000 SCALE2 0.000000 0.009800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006455 0.00000