HEADER TRANSFERASE 08-SEP-21 7VEE TITLE THE LIGAND-FREE STRUCTURE OF GFSA KSQ-AT DIDOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES GRAMINOFACIENS; SOURCE 3 ORGANISM_TAXID: 68212; SOURCE 4 GENE: GFSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLD III KEYWDS DECARBOXYLASE, THIOLASE FOLD, POLYKETIDE BIOSYNTHESIS, BIOSYNTHETIC KEYWDS 2 PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.CHISUGA,A.MIYANAGA,A.NAGAI,F.KUDO,T.EGUCHI REVDAT 3 29-NOV-23 7VEE 1 REMARK REVDAT 2 02-FEB-22 7VEE 1 JRNL REVDAT 1 12-JAN-22 7VEE 0 JRNL AUTH T.CHISUGA,A.NAGAI,A.MIYANAGA,E.GOTO,K.KISHIKAWA,F.KUDO, JRNL AUTH 2 T.EGUCHI JRNL TITL STRUCTURAL INSIGHT INTO THE REACTION MECHANISM OF JRNL TITL 2 KETOSYNTHASE-LIKE DECARBOXYLASE IN A LOADING MODULE OF JRNL TITL 3 MODULAR POLYKETIDE SYNTHASES. JRNL REF ACS CHEM.BIOL. V. 17 198 2022 JRNL REFN ESSN 1554-8937 JRNL PMID 34985877 JRNL DOI 10.1021/ACSCHEMBIO.1C00856 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1950 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2753 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3940 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6090 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.38000 REMARK 3 B22 (A**2) : -3.38000 REMARK 3 B33 (A**2) : 10.98000 REMARK 3 B12 (A**2) : -1.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.352 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6208 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5885 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8438 ; 1.427 ; 1.627 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13496 ; 1.205 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 820 ; 6.860 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;28.869 ;19.748 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 919 ;17.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;19.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7164 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1400 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): -61.7760 34.0410 1.1690 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0875 REMARK 3 T33: 0.1342 T12: 0.0242 REMARK 3 T13: 0.0005 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 0.0761 L22: 0.3704 REMARK 3 L33: 0.1697 L12: -0.0404 REMARK 3 L13: -0.0152 L23: 0.2317 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: -0.0073 S13: 0.0249 REMARK 3 S21: -0.0684 S22: 0.0354 S23: 0.0462 REMARK 3 S31: -0.0576 S32: -0.0090 S33: -0.0178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7VEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.03300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4MZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, GLYCEROL, SODIUM REMARK 280 CHLORIDE, HEPES, PH 6.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 115.38150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.61554 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 39.31667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 115.38150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.61554 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.31667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 115.38150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.61554 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.31667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 115.38150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 66.61554 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.31667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 115.38150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 66.61554 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.31667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 115.38150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 66.61554 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.31667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 133.23108 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 78.63333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 133.23108 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 78.63333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 133.23108 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 78.63333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 133.23108 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.63333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 133.23108 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 78.63333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 133.23108 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 78.63333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 ASN A 8 REMARK 465 HIS A 9 REMARK 465 LYS A 10 REMARK 465 VAL A 11 REMARK 465 HIS A 12 REMARK 465 MET A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 SER A 16 REMARK 465 GLN A 17 REMARK 465 ASN A 18 REMARK 465 SER A 19 REMARK 465 GLU A 20 REMARK 465 PHE A 21 REMARK 465 GLU A 22 REMARK 465 THR A 23 REMARK 465 PRO A 68 REMARK 465 PRO A 69 REMARK 465 SER A 70 REMARK 465 THR A 71 REMARK 465 GLU A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 SER A 75 REMARK 465 ALA A 76 REMARK 465 ASP A 77 REMARK 465 GLY A 78 REMARK 465 GLU A 79 REMARK 465 ALA A 80 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 465 GLU A 159 REMARK 465 GLY A 160 REMARK 465 ARG A 161 REMARK 465 ALA A 162 REMARK 465 PRO A 424 REMARK 465 SER A 425 REMARK 465 GLY A 426 REMARK 465 GLY A 427 REMARK 465 GLY A 428 REMARK 465 ARG A 429 REMARK 465 VAL A 454 REMARK 465 PRO A 455 REMARK 465 GLU A 456 REMARK 465 ASP A 457 REMARK 465 GLY A 458 REMARK 465 GLU A 459 REMARK 465 THR A 460 REMARK 465 THR A 461 REMARK 465 SER A 462 REMARK 465 GLU A 463 REMARK 465 ALA A 464 REMARK 465 GLY A 465 REMARK 465 ALA A 466 REMARK 465 THR A 467 REMARK 465 GLY A 468 REMARK 465 PRO A 469 REMARK 465 ASP A 470 REMARK 465 SER A 471 REMARK 465 GLY A 472 REMARK 465 PRO A 473 REMARK 465 GLY A 547 REMARK 465 SER A 548 REMARK 465 PRO A 549 REMARK 465 VAL A 550 REMARK 465 THR A 551 REMARK 465 ALA A 552 REMARK 465 ALA A 553 REMARK 465 GLY A 554 REMARK 465 ALA A 555 REMARK 465 VAL A 556 REMARK 465 ASP A 557 REMARK 465 GLY A 558 REMARK 465 SER A 608 REMARK 465 GLU A 609 REMARK 465 GLY A 610 REMARK 465 TRP A 611 REMARK 465 ALA A 612 REMARK 465 ALA A 855 REMARK 465 GLU A 856 REMARK 465 GLY A 857 REMARK 465 GLY A 858 REMARK 465 ALA A 859 REMARK 465 GLY A 860 REMARK 465 ASN A 920 REMARK 465 VAL A 921 REMARK 465 PRO A 922 REMARK 465 GLU A 923 REMARK 465 LEU A 924 REMARK 465 ALA A 925 REMARK 465 VAL A 926 REMARK 465 SER A 927 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 821 OD2 ASP A 824 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 27 116.73 -37.45 REMARK 500 PHE A 251 -9.89 77.87 REMARK 500 ALA A 255 118.15 -34.09 REMARK 500 ASN A 256 20.87 -152.19 REMARK 500 ASP A 356 -73.57 -71.33 REMARK 500 GLU A 372 -113.94 61.67 REMARK 500 SER A 399 -50.69 -124.79 REMARK 500 PRO A 406 93.05 -69.53 REMARK 500 ALA A 452 161.66 -49.65 REMARK 500 THR A 521 137.38 -36.39 REMARK 500 MET A 576 96.94 -4.45 REMARK 500 LEU A 605 77.79 -111.51 REMARK 500 SER A 662 -113.74 56.78 REMARK 500 SER A 696 -177.02 -66.28 REMARK 500 CYS A 807 31.14 -97.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 7VEE A 7 927 PDB 7VEE 7VEE 7 927 SEQRES 1 A 921 MET ASN HIS LYS VAL HIS MET GLY ARG SER GLN ASN SER SEQRES 2 A 921 GLU PHE GLU THR ALA SER ASP GLU PRO ILE ALA VAL ILE SEQRES 3 A 921 GLY LEU SER CYS ARG LEU PRO LYS ALA SER GLY PRO GLN SEQRES 4 A 921 GLU LEU TRP GLN LEU LEU ASP ASP GLY ALA SER ALA VAL SEQRES 5 A 921 THR ARG VAL PRO ALA ASP ARG GLU THR PRO PRO SER THR SEQRES 6 A 921 GLU GLU GLU SER ALA ASP GLY GLU ALA ALA GLY ALA ARG SEQRES 7 A 921 TRP GLY GLY PHE LEU ASP ARG VAL ASP THR PHE ASP ALA SEQRES 8 A 921 GLY PHE PHE GLY ILE SER PRO ARG GLU ALA ALA ALA MET SEQRES 9 A 921 ASP PRO GLN GLN ARG LEU VAL LEU GLU LEU SER TRP GLU SEQRES 10 A 921 ALA LEU GLU GLY ALA GLY LEU VAL PRO ALA THR LEU ARG SEQRES 11 A 921 ASP THR GLY LEU GLY VAL PHE VAL GLY ALA ALA ARG ASP SEQRES 12 A 921 ASP TYR ALA THR LEU TYR ARG ARG ARG GLU GLY ARG ALA SEQRES 13 A 921 VAL ASP HIS HIS ALA MET THR GLY LEU HIS ARG SER LEU SEQRES 14 A 921 ILE ALA ASN ARG ILE SER TYR ALA LEU GLY ALA HIS GLY SEQRES 15 A 921 PRO SER MET VAL VAL ASP THR GLY GLN SER SER SER LEU SEQRES 16 A 921 VAL ALA VAL HIS LEU ALA CYS GLU SER LEU ARG ARG GLY SEQRES 17 A 921 GLU SER ASP ILE ALA LEU ALA GLY GLY VAL ASN LEU ASN SEQRES 18 A 921 ILE ALA ALA GLU SER ALA ARG GLU THR ALA ALA PHE GLY SEQRES 19 A 921 GLY LEU SER PRO ASP GLY GLN CYS PHE THR PHE ASP ALA SEQRES 20 A 921 ARG ALA ASN GLY PHE VAL ARG GLY GLU GLY GLY GLY LEU SEQRES 21 A 921 VAL VAL LEU LYS THR LEU ARG ARG ALA LEU ALA ASP GLY SEQRES 22 A 921 ASP LEU VAL HIS GLY VAL ILE LEU ALA SER ALA VAL ASN SEQRES 23 A 921 ASN ASP GLY PRO SER ASP THR LEU THR THR PRO SER ARG SEQRES 24 A 921 ARG ALA GLN GLU SER LEU LEU THR ARG VAL TYR ARG ARG SEQRES 25 A 921 ALA GLY VAL THR PRO THR GLU VAL GLY TYR VAL GLU LEU SEQRES 26 A 921 HIS GLY THR GLY THR LYS VAL GLY ASP PRO ILE GLU ALA SEQRES 27 A 921 ALA ALA LEU GLY ALA VAL LEU GLY THR GLY ARG ASP THR SEQRES 28 A 921 PRO LEU PRO VAL GLY SER ILE LYS THR ASN ILE GLY HIS SEQRES 29 A 921 LEU GLU GLY ALA ALA GLY ILE ALA GLY LEU ILE LYS ALA SEQRES 30 A 921 LEU LEU GLN LEU ARG ARG ARG ARG LEU VAL PRO SER LEU SEQRES 31 A 921 ASN PHE SER THR PRO ASN PRO ASP ILE PRO LEU ASP ALA SEQRES 32 A 921 LEU ASN LEU ARG VAL GLN GLN GLU SER ALA PRO TRP ALA SEQRES 33 A 921 THR PRO SER GLY GLY GLY ARG THR LEU VAL ALA GLY VAL SEQRES 34 A 921 SER SER PHE GLY MET GLY GLY THR ASN CYS HIS VAL VAL SEQRES 35 A 921 VAL SER ALA ALA PRO VAL PRO GLU ASP GLY GLU THR THR SEQRES 36 A 921 SER GLU ALA GLY ALA THR GLY PRO ASP SER GLY PRO ALA SEQRES 37 A 921 LEU LEU PRO TRP VAL VAL SER ALA ARG SER PRO GLN ALA SEQRES 38 A 921 LEU ARG ASP GLN ALA GLY ARG LEU ALA ALA TRP ALA ASP SEQRES 39 A 921 SER PRO ALA GLY ARG GLU ALA SER PRO VAL ASP ILE GLY SEQRES 40 A 921 TRP SER LEU ALA THR SER ARG THR HIS PHE GLU TYR ARG SEQRES 41 A 921 ALA VAL VAL SER GLY SER ASP ARG ASP GLU LEU VAL ALA SEQRES 42 A 921 SER LEU ARG ALA LEU ALA SER GLY SER PRO VAL THR ALA SEQRES 43 A 921 ALA GLY ALA VAL ASP GLY GLY GLY ARG LEU GLY LEU VAL SEQRES 44 A 921 PHE SER GLY GLN GLY SER GLN ARG ALA GLY MET GLY ARG SEQRES 45 A 921 GLU LEU TYR VAL ALA PHE PRO VAL PHE ALA GLU ALA PHE SEQRES 46 A 921 ASP GLU VAL CYS GLY VAL LEU ASP GLU VAL MET GLY ALA SEQRES 47 A 921 LEU PRO PRO SER GLU GLY TRP ALA GLY SER LEU ARG GLU SEQRES 48 A 921 VAL MET PHE GLU VAL SER SER ASP LEU LEU ASP GLU THR SEQRES 49 A 921 GLY PHE THR GLN PRO ALA LEU PHE ALA PHE GLU VAL ALA SEQRES 50 A 921 LEU TYR ARG LEU LEU GLU SER TRP GLY VAL ALA GLY GLU SEQRES 51 A 921 VAL VAL ALA GLY HIS SER VAL GLY GLU ILE ALA ALA VAL SEQRES 52 A 921 HIS VAL ALA GLY VAL LEU SER LEU ALA ASP ALA CYS ALA SEQRES 53 A 921 LEU VAL ALA ALA ARG GLY ARG LEU MET GLN GLY LEU PRO SEQRES 54 A 921 SER GLY GLY ALA MET VAL ALA VAL GLU ALA SER GLU GLU SEQRES 55 A 921 GLU VAL THR ALA LEU LEU ALA GLY ARG GLU GLY GLU VAL SEQRES 56 A 921 GLY ILE GLY ALA VAL ASN GLY PRO ARG SER VAL VAL VAL SEQRES 57 A 921 SER GLY GLY VAL ALA VAL VAL GLU GLU VAL ALA ALA HIS SEQRES 58 A 921 PHE ALA GLY LEU GLY ARG ARG ALA ARG ARG LEU LYS VAL SEQRES 59 A 921 SER HIS ALA PHE HIS SER PRO LEU MET ASP PRO MET LEU SEQRES 60 A 921 GLU ASP PHE GLY ARG VAL VAL ALA GLY LEU SER PHE ALA SEQRES 61 A 921 VAL PRO GLU LEU THR VAL VAL SER GLY LEU THR GLY ALA SEQRES 62 A 921 VAL VAL SER ALA ASP GLU LEU CYS SER VAL GLY TYR TRP SEQRES 63 A 921 VAL ARG HIS ALA ARG GLU ALA VAL ARG PHE ALA ASP ALA SEQRES 64 A 921 VAL GLY ALA MET ALA GLY VAL GLY VAL GLY ARG PHE VAL SEQRES 65 A 921 GLU VAL GLY PRO GLY GLY VAL LEU SER ALA LEU VAL ARG SEQRES 66 A 921 GLU CYS LEU ALA GLU GLY GLY ALA GLY SER VAL VAL ALA SEQRES 67 A 921 ALA VAL ARG GLY ASN ARG ALA GLU PRO VAL ALA LEU LEU SEQRES 68 A 921 SER ALA VAL GLY GLU LEU PHE ALA ASP GLY TYR PRO VAL SEQRES 69 A 921 ASP TRP THR ALA TYR PHE ALA GLY TRP PRO ALA ALA ARG SEQRES 70 A 921 VAL GLU LEU PRO THR TYR ALA PHE GLN ARG SER ARG HIS SEQRES 71 A 921 TRP LEU GLU ASN VAL PRO GLU LEU ALA VAL SER HET GOL A1001 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *18(H2 O) HELIX 1 AA1 GLY A 43 ASP A 53 1 11 HELIX 2 AA2 ALA A 97 GLY A 101 5 5 HELIX 3 AA3 SER A 103 MET A 110 1 8 HELIX 4 AA4 ASP A 111 GLY A 129 1 19 HELIX 5 AA5 VAL A 131 ARG A 136 5 6 HELIX 6 AA6 ASP A 149 ARG A 158 1 10 HELIX 7 AA7 HIS A 166 HIS A 172 1 7 HELIX 8 AA8 SER A 174 LEU A 184 1 11 HELIX 9 AA9 THR A 195 GLN A 197 5 3 HELIX 10 AB1 SER A 198 ARG A 213 1 16 HELIX 11 AB2 ALA A 229 GLY A 240 1 12 HELIX 12 AB3 LEU A 272 GLY A 279 1 8 HELIX 13 AB4 SER A 304 GLY A 320 1 17 HELIX 14 AB5 VAL A 338 LEU A 351 1 14 HELIX 15 AB6 ILE A 364 GLY A 369 1 6 HELIX 16 AB7 LEU A 371 GLY A 373 5 3 HELIX 17 AB8 ALA A 374 ARG A 390 1 17 HELIX 18 AB9 PRO A 406 ASN A 411 1 6 HELIX 19 AC1 SER A 484 SER A 501 1 18 HELIX 20 AC2 SER A 501 GLU A 506 1 6 HELIX 21 AC3 SER A 508 SER A 519 1 12 HELIX 22 AC4 ASP A 533 ALA A 545 1 13 HELIX 23 AC5 GLY A 577 PHE A 584 1 8 HELIX 24 AC6 PHE A 584 LEU A 605 1 22 HELIX 25 AC7 SER A 614 GLU A 621 1 8 HELIX 26 AC8 ASP A 625 ASP A 628 5 4 HELIX 27 AC9 GLU A 629 TRP A 651 1 23 HELIX 28 AD1 VAL A 663 ALA A 672 1 10 HELIX 29 AD2 SER A 676 GLY A 693 1 18 HELIX 30 AD3 SER A 706 ALA A 715 1 10 HELIX 31 AD4 VAL A 738 LEU A 751 1 14 HELIX 32 AD5 SER A 766 LEU A 768 5 3 HELIX 33 AD6 MET A 769 ALA A 781 1 13 HELIX 34 AD7 SER A 802 CYS A 807 1 6 HELIX 35 AD8 SER A 808 GLU A 818 1 11 HELIX 36 AD9 ARG A 821 VAL A 832 1 12 HELIX 37 AE1 GLY A 844 LEU A 854 1 11 HELIX 38 AE2 ALA A 871 ASP A 886 1 16 HELIX 39 AE3 ASP A 891 PHE A 896 5 6 SHEET 1 AA111 SER A 190 VAL A 193 0 SHEET 2 AA111 GLY A 141 GLY A 145 1 N VAL A 142 O MET A 191 SHEET 3 AA111 ALA A 219 ASN A 225 1 O LEU A 220 N GLY A 141 SHEET 4 AA111 GLY A 263 THR A 271 -1 O LEU A 269 N ALA A 219 SHEET 5 AA111 ILE A 29 ARG A 37 -1 N ALA A 30 O LYS A 270 SHEET 6 AA111 GLY A 284 ASN A 293 -1 O ILE A 286 N ILE A 29 SHEET 7 AA111 THR A 443 SER A 450 -1 O VAL A 448 N LEU A 287 SHEET 8 AA111 VAL A 432 PHE A 438 -1 N ALA A 433 O VAL A 449 SHEET 9 AA111 TYR A 328 GLU A 330 1 N GLU A 330 O GLY A 434 SHEET 10 AA111 LEU A 359 GLY A 362 1 O PRO A 360 N VAL A 329 SHEET 11 AA111 LEU A 412 VAL A 414 1 O ARG A 413 N VAL A 361 SHEET 1 AA2 2 VAL A 58 ARG A 60 0 SHEET 2 AA2 2 TRP A 85 GLY A 87 -1 O GLY A 86 N THR A 59 SHEET 1 AA3 2 THR A 94 PHE A 95 0 SHEET 2 AA3 2 SER A 914 ARG A 915 -1 O SER A 914 N PHE A 95 SHEET 1 AA4 2 LEU A 476 ALA A 482 0 SHEET 2 AA4 2 TYR A 525 GLY A 531 -1 O GLY A 531 N LEU A 476 SHEET 1 AA5 6 VAL A 800 VAL A 801 0 SHEET 2 AA5 6 THR A 791 VAL A 793 -1 N VAL A 792 O VAL A 801 SHEET 3 AA5 6 VAL A 657 GLY A 660 1 N VAL A 658 O THR A 791 SHEET 4 AA5 6 ARG A 561 PHE A 566 1 N LEU A 564 O VAL A 657 SHEET 5 AA5 6 VAL A 834 VAL A 840 1 O ARG A 836 N GLY A 563 SHEET 6 AA5 6 VAL A 862 ALA A 864 1 O VAL A 863 N PHE A 837 SHEET 1 AA6 4 VAL A 721 GLY A 728 0 SHEET 2 AA6 4 SER A 731 GLY A 737 -1 O VAL A 733 N GLY A 724 SHEET 3 AA6 4 GLY A 698 VAL A 703 -1 N VAL A 703 O VAL A 732 SHEET 4 AA6 4 ALA A 755 ARG A 757 -1 O ARG A 756 N ALA A 702 CRYST1 230.763 230.763 117.950 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004333 0.002502 0.000000 0.00000 SCALE2 0.000000 0.005004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008478 0.00000