HEADER MEMBRANE PROTEIN 18-SEP-21 7VGV TITLE ANION FREE FORM OF LIGHT-DRIVEN CHLORIDE ION-PUMPING RHODOPSIN, NM-R3, TITLE 2 STRUCTURE DETERMINED BY SERIAL FEMTOSECOND CRYSTALLOGRAPHY AT SACLA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLORIDE PUMPING RHODOPSIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NONLABENS MARINUS S1-08; SOURCE 3 ORGANISM_TAXID: 1454201; SOURCE 4 GENE: CLR, NMS_1267; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SACLA SERIAL FEMTOSECOND CRYSTALLOGRAPHY CELL-FREE SYNTHESIS KEYWDS 2 BACTERIAL TYPE RHODOPSIN CHLORIDE ION PUMP RHODOPSIN, MEMBRANE KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,E.NANGO,T.NAKANE,F.LUO,T.KIMURA-SOMEYA,M.SHIROUZU REVDAT 4 29-NOV-23 7VGV 1 REMARK REVDAT 3 06-SEP-23 7VGV 1 REMARK REVDAT 2 09-MAR-22 7VGV 1 JRNL REVDAT 1 16-FEB-22 7VGV 0 JRNL AUTH T.HOSAKA,T.NOMURA,M.KUBO,T.NAKANE,L.FANGJIA,S.I.SEKINE, JRNL AUTH 2 T.ITO,K.MURAYAMA,K.IHARA,H.EHARA,K.KASHIWAGI,K.KATSURA, JRNL AUTH 3 R.AKASAKA,T.HISANO,T.TANAKA,R.TANAKA,T.ARIMA,A.YAMASHITA, JRNL AUTH 4 M.SUGAHARA,H.NAITOW,Y.MATSUURA,S.YOSHIZAWA,K.TONO,S.OWADA, JRNL AUTH 5 O.NUREKI,T.KIMURA-SOMEYA,S.IWATA,E.NANGO,M.SHIROUZU JRNL TITL CONFORMATIONAL ALTERATIONS IN UNIDIRECTIONAL ION TRANSPORT JRNL TITL 2 OF A LIGHT-DRIVEN CHLORIDE PUMP REVEALED USING X-RAY FREE JRNL TITL 3 ELECTRON LASERS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35197289 JRNL DOI 10.1073/PNAS.2117433119 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4600 - 6.0200 0.99 2852 137 0.2161 0.2394 REMARK 3 2 6.0200 - 4.7800 1.00 2722 135 0.2375 0.2375 REMARK 3 3 4.7800 - 4.1800 1.00 2660 166 0.1838 0.2049 REMARK 3 4 4.1800 - 3.8000 1.00 2675 115 0.1849 0.2178 REMARK 3 5 3.8000 - 3.5200 1.00 2638 159 0.1919 0.2308 REMARK 3 6 3.5200 - 3.3200 1.00 2652 119 0.1909 0.2111 REMARK 3 7 3.3200 - 3.1500 1.00 2610 146 0.1973 0.2565 REMARK 3 8 3.1500 - 3.0100 1.00 2651 124 0.2005 0.2738 REMARK 3 9 3.0100 - 2.9000 1.00 2637 114 0.2059 0.2510 REMARK 3 10 2.9000 - 2.8000 1.00 2640 131 0.2064 0.2747 REMARK 3 11 2.8000 - 2.7100 1.00 2578 146 0.2032 0.2464 REMARK 3 12 2.7100 - 2.6300 1.00 2597 143 0.2089 0.2356 REMARK 3 13 2.6300 - 2.5600 1.00 2632 119 0.2339 0.2500 REMARK 3 14 2.5600 - 2.5000 1.00 2575 156 0.2383 0.2848 REMARK 3 15 2.5000 - 2.4400 1.00 2623 121 0.2553 0.3282 REMARK 3 16 2.4400 - 2.3900 1.00 2593 138 0.2707 0.3392 REMARK 3 17 2.3900 - 2.3400 1.00 2607 139 0.2810 0.2860 REMARK 3 18 2.3400 - 2.3000 1.00 2589 151 0.2964 0.3435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024647. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : BL3 REMARK 200 X-RAY GENERATOR MODEL : SACLA BEAMLINE BL3 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.771 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MPCCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL 0.61 REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL 0.61 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50102 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 136.0 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5B2N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES (PH7.0), 400-700 MM K REMARK 280 PHOSPHATE, AND 24-30% PEG400, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 115.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 266 REMARK 465 MET A 267 REMARK 465 ASP A 268 REMARK 465 SER A 269 REMARK 465 LYS A 270 REMARK 465 ALA A 271 REMARK 465 ALA A 272 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 266 REMARK 465 MET B 267 REMARK 465 ASP B 268 REMARK 465 SER B 269 REMARK 465 LYS B 270 REMARK 465 ALA B 271 REMARK 465 ALA B 272 REMARK 465 GLY C -6 REMARK 465 SER C -5 REMARK 465 SER C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 SER C -1 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 GLY C 266 REMARK 465 MET C 267 REMARK 465 ASP C 268 REMARK 465 SER C 269 REMARK 465 LYS C 270 REMARK 465 ALA C 271 REMARK 465 ALA C 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 119 CE NZ REMARK 470 ILE A 265 CG1 CG2 CD1 REMARK 470 LYS B 119 CD CE NZ REMARK 470 ILE B 265 CG1 CG2 CD1 REMARK 470 ILE C 265 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS A 235 C15 RET A 301 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 214 74.61 -153.84 REMARK 500 MET B 214 67.80 -152.67 REMARK 500 MET C 214 72.33 -151.55 REMARK 500 REMARK 500 REMARK: NULL DBREF 7VGV A 1 272 UNP W8VZW3 W8VZW3_9FLAO 1 272 DBREF 7VGV B 1 272 UNP W8VZW3 W8VZW3_9FLAO 1 272 DBREF 7VGV C 1 272 UNP W8VZW3 W8VZW3_9FLAO 1 272 SEQADV 7VGV GLY A -6 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER A -5 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER A -4 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY A -3 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER A -2 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER A -1 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY A 0 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY B -6 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER B -5 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER B -4 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY B -3 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER B -2 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER B -1 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY B 0 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY C -6 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER C -5 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER C -4 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY C -3 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER C -2 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV SER C -1 UNP W8VZW3 EXPRESSION TAG SEQADV 7VGV GLY C 0 UNP W8VZW3 EXPRESSION TAG SEQRES 1 A 279 GLY SER SER GLY SER SER GLY MET LYS ASN ILE GLU SER SEQRES 2 A 279 LEU PHE ASP TYR SER ALA GLY GLN PHE GLU PHE ILE ASP SEQRES 3 A 279 HIS LEU LEU THR MET GLY VAL GLY VAL HIS PHE ALA ALA SEQRES 4 A 279 LEU ILE PHE PHE LEU VAL VAL SER GLN PHE VAL ALA PRO SEQRES 5 A 279 LYS TYR ARG ILE ALA THR ALA LEU SER CYS ILE VAL MET SEQRES 6 A 279 VAL SER ALA GLY LEU ILE LEU ASN SER GLN ALA VAL MET SEQRES 7 A 279 TRP THR ASP ALA TYR ALA TYR VAL ASP GLY SER TYR GLN SEQRES 8 A 279 LEU GLN ASP LEU THR PHE SER ASN GLY TYR ARG TYR VAL SEQRES 9 A 279 ASN TRP MET ALA THR ILE PRO CYS LEU LEU LEU GLN LEU SEQRES 10 A 279 LEU ILE VAL LEU ASN LEU LYS GLY LYS GLU LEU PHE SER SEQRES 11 A 279 THR ALA THR TRP LEU ILE LEU ALA ALA TRP GLY MET ILE SEQRES 12 A 279 ILE THR GLY TYR VAL GLY GLN LEU TYR GLU VAL ASP ASP SEQRES 13 A 279 ILE ALA GLN LEU MET ILE TRP GLY ALA VAL SER THR ALA SEQRES 14 A 279 PHE PHE VAL VAL MET ASN TRP ILE VAL GLY THR LYS ILE SEQRES 15 A 279 PHE LYS ASN ARG ALA THR MET LEU GLY GLY THR ASP SER SEQRES 16 A 279 THR ILE THR LYS VAL PHE TRP LEU MET MET PHE ALA TRP SEQRES 17 A 279 THR LEU TYR PRO ILE ALA TYR LEU VAL PRO ALA PHE MET SEQRES 18 A 279 ASN ASN ALA ASP GLY VAL VAL LEU ARG GLN LEU LEU PHE SEQRES 19 A 279 THR ILE ALA ASP ILE SER SER LYS VAL ILE TYR GLY LEU SEQRES 20 A 279 MET ILE THR TYR ILE ALA ILE GLN GLN SER ALA ALA ALA SEQRES 21 A 279 GLY TYR VAL PRO ALA GLN GLN ALA LEU GLY ARG ILE GLY SEQRES 22 A 279 MET ASP SER LYS ALA ALA SEQRES 1 B 279 GLY SER SER GLY SER SER GLY MET LYS ASN ILE GLU SER SEQRES 2 B 279 LEU PHE ASP TYR SER ALA GLY GLN PHE GLU PHE ILE ASP SEQRES 3 B 279 HIS LEU LEU THR MET GLY VAL GLY VAL HIS PHE ALA ALA SEQRES 4 B 279 LEU ILE PHE PHE LEU VAL VAL SER GLN PHE VAL ALA PRO SEQRES 5 B 279 LYS TYR ARG ILE ALA THR ALA LEU SER CYS ILE VAL MET SEQRES 6 B 279 VAL SER ALA GLY LEU ILE LEU ASN SER GLN ALA VAL MET SEQRES 7 B 279 TRP THR ASP ALA TYR ALA TYR VAL ASP GLY SER TYR GLN SEQRES 8 B 279 LEU GLN ASP LEU THR PHE SER ASN GLY TYR ARG TYR VAL SEQRES 9 B 279 ASN TRP MET ALA THR ILE PRO CYS LEU LEU LEU GLN LEU SEQRES 10 B 279 LEU ILE VAL LEU ASN LEU LYS GLY LYS GLU LEU PHE SER SEQRES 11 B 279 THR ALA THR TRP LEU ILE LEU ALA ALA TRP GLY MET ILE SEQRES 12 B 279 ILE THR GLY TYR VAL GLY GLN LEU TYR GLU VAL ASP ASP SEQRES 13 B 279 ILE ALA GLN LEU MET ILE TRP GLY ALA VAL SER THR ALA SEQRES 14 B 279 PHE PHE VAL VAL MET ASN TRP ILE VAL GLY THR LYS ILE SEQRES 15 B 279 PHE LYS ASN ARG ALA THR MET LEU GLY GLY THR ASP SER SEQRES 16 B 279 THR ILE THR LYS VAL PHE TRP LEU MET MET PHE ALA TRP SEQRES 17 B 279 THR LEU TYR PRO ILE ALA TYR LEU VAL PRO ALA PHE MET SEQRES 18 B 279 ASN ASN ALA ASP GLY VAL VAL LEU ARG GLN LEU LEU PHE SEQRES 19 B 279 THR ILE ALA ASP ILE SER SER LYS VAL ILE TYR GLY LEU SEQRES 20 B 279 MET ILE THR TYR ILE ALA ILE GLN GLN SER ALA ALA ALA SEQRES 21 B 279 GLY TYR VAL PRO ALA GLN GLN ALA LEU GLY ARG ILE GLY SEQRES 22 B 279 MET ASP SER LYS ALA ALA SEQRES 1 C 279 GLY SER SER GLY SER SER GLY MET LYS ASN ILE GLU SER SEQRES 2 C 279 LEU PHE ASP TYR SER ALA GLY GLN PHE GLU PHE ILE ASP SEQRES 3 C 279 HIS LEU LEU THR MET GLY VAL GLY VAL HIS PHE ALA ALA SEQRES 4 C 279 LEU ILE PHE PHE LEU VAL VAL SER GLN PHE VAL ALA PRO SEQRES 5 C 279 LYS TYR ARG ILE ALA THR ALA LEU SER CYS ILE VAL MET SEQRES 6 C 279 VAL SER ALA GLY LEU ILE LEU ASN SER GLN ALA VAL MET SEQRES 7 C 279 TRP THR ASP ALA TYR ALA TYR VAL ASP GLY SER TYR GLN SEQRES 8 C 279 LEU GLN ASP LEU THR PHE SER ASN GLY TYR ARG TYR VAL SEQRES 9 C 279 ASN TRP MET ALA THR ILE PRO CYS LEU LEU LEU GLN LEU SEQRES 10 C 279 LEU ILE VAL LEU ASN LEU LYS GLY LYS GLU LEU PHE SER SEQRES 11 C 279 THR ALA THR TRP LEU ILE LEU ALA ALA TRP GLY MET ILE SEQRES 12 C 279 ILE THR GLY TYR VAL GLY GLN LEU TYR GLU VAL ASP ASP SEQRES 13 C 279 ILE ALA GLN LEU MET ILE TRP GLY ALA VAL SER THR ALA SEQRES 14 C 279 PHE PHE VAL VAL MET ASN TRP ILE VAL GLY THR LYS ILE SEQRES 15 C 279 PHE LYS ASN ARG ALA THR MET LEU GLY GLY THR ASP SER SEQRES 16 C 279 THR ILE THR LYS VAL PHE TRP LEU MET MET PHE ALA TRP SEQRES 17 C 279 THR LEU TYR PRO ILE ALA TYR LEU VAL PRO ALA PHE MET SEQRES 18 C 279 ASN ASN ALA ASP GLY VAL VAL LEU ARG GLN LEU LEU PHE SEQRES 19 C 279 THR ILE ALA ASP ILE SER SER LYS VAL ILE TYR GLY LEU SEQRES 20 C 279 MET ILE THR TYR ILE ALA ILE GLN GLN SER ALA ALA ALA SEQRES 21 C 279 GLY TYR VAL PRO ALA GLN GLN ALA LEU GLY ARG ILE GLY SEQRES 22 C 279 MET ASP SER LYS ALA ALA HET RET A 301 20 HET HEX A 302 6 HET HEX A 303 6 HET DD9 A 304 9 HET DD9 A 305 9 HET C14 A 306 14 HET R16 A 307 16 HET RET B 301 20 HET HEX B 302 6 HET HEX B 303 6 HET HEX B 304 6 HET DD9 B 305 9 HET C14 B 306 14 HET OCT B 307 8 HET RET C 301 20 HET CL C 302 1 HET CL C 303 1 HET HEX C 304 6 HETNAM RET RETINAL HETNAM HEX HEXANE HETNAM DD9 NONANE HETNAM C14 TETRADECANE HETNAM R16 HEXADECANE HETNAM OCT N-OCTANE HETNAM CL CHLORIDE ION FORMUL 4 RET 3(C20 H28 O) FORMUL 5 HEX 6(C6 H14) FORMUL 7 DD9 3(C9 H20) FORMUL 9 C14 2(C14 H30) FORMUL 10 R16 C16 H34 FORMUL 17 OCT C8 H18 FORMUL 19 CL 2(CL 1-) FORMUL 22 HOH *70(H2 O) HELIX 1 AA1 ASN A 3 PHE A 8 5 6 HELIX 2 AA2 SER A 11 SER A 40 1 30 HELIX 3 AA3 GLN A 41 VAL A 43 5 3 HELIX 4 AA4 ALA A 44 ALA A 75 1 32 HELIX 5 AA5 ASN A 92 LEU A 114 1 23 HELIX 6 AA6 LYS A 117 LEU A 144 1 28 HELIX 7 AA7 ASP A 149 ARG A 179 1 31 HELIX 8 AA8 ALA A 180 MET A 182 5 3 HELIX 9 AA9 GLY A 185 LEU A 209 1 25 HELIX 10 AB1 LEU A 209 MET A 214 1 6 HELIX 11 AB2 ASN A 216 LYS A 235 1 20 HELIX 12 AB3 LYS A 235 ALA A 253 1 19 HELIX 13 AB4 TYR A 255 ILE A 265 1 11 HELIX 14 AB5 ASN B 3 PHE B 8 5 6 HELIX 15 AB6 ALA B 12 SER B 40 1 29 HELIX 16 AB7 GLN B 41 VAL B 43 5 3 HELIX 17 AB8 TYR B 47 ALA B 75 1 29 HELIX 18 AB9 ASN B 92 LEU B 114 1 23 HELIX 19 AC1 LYS B 117 LEU B 144 1 28 HELIX 20 AC2 ASP B 149 ARG B 179 1 31 HELIX 21 AC3 ALA B 180 MET B 182 5 3 HELIX 22 AC4 GLY B 185 LEU B 209 1 25 HELIX 23 AC5 LEU B 209 MET B 214 1 6 HELIX 24 AC6 ASN B 216 ALA B 253 1 38 HELIX 25 AC7 TYR B 255 ILE B 265 1 11 HELIX 26 AC8 ASN C 3 PHE C 8 5 6 HELIX 27 AC9 SER C 11 SER C 40 1 30 HELIX 28 AD1 GLN C 41 VAL C 43 5 3 HELIX 29 AD2 ALA C 44 ALA C 75 1 32 HELIX 30 AD3 ASN C 92 LEU C 114 1 23 HELIX 31 AD4 LYS C 117 LEU C 144 1 28 HELIX 32 AD5 ASP C 149 ARG C 179 1 31 HELIX 33 AD6 ALA C 180 MET C 182 5 3 HELIX 34 AD7 GLY C 185 LEU C 209 1 25 HELIX 35 AD8 LEU C 209 MET C 214 1 6 HELIX 36 AD9 ASN C 216 LYS C 235 1 20 HELIX 37 AE1 LYS C 235 ALA C 253 1 19 HELIX 38 AE2 TYR C 255 ILE C 265 1 11 SHEET 1 AA1 2 TYR A 76 VAL A 79 0 SHEET 2 AA1 2 SER A 82 LEU A 85 -1 O SER A 82 N VAL A 79 SHEET 1 AA2 3 TYR B 10 SER B 11 0 SHEET 2 AA2 3 SER B 82 LEU B 85 -1 O TYR B 83 N TYR B 10 SHEET 3 AA2 3 TYR B 76 VAL B 79 -1 N VAL B 79 O SER B 82 SHEET 1 AA3 2 TYR C 76 VAL C 79 0 SHEET 2 AA3 2 SER C 82 LEU C 85 -1 O SER C 82 N VAL C 79 LINK NZ LYS A 235 C15 RET A 301 1555 1555 1.43 LINK NZ LYS B 235 C15 RET B 301 1555 1555 1.43 LINK NZ LYS C 235 C15 RET C 301 1555 1555 1.43 CRYST1 68.400 69.500 231.400 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014620 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004322 0.00000