HEADER HYDROLASE 20-SEP-21 7VH4 TITLE CRYSTAL STRUCTURE OF OLIGORIBONUCLEASE OF ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGORIBONUCLEASE; COMPND 3 CHAIN: D, C, B, A; COMPND 4 EC: 3.1.13.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ORN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-HIS10-SMT3 KEYWDS OLIGORIBONUCLEASE, ORN, RNASE H-LIKE FOLD, GENE REGULATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BADHWAR,B.TANEJA REVDAT 3 29-NOV-23 7VH4 1 REMARK REVDAT 2 21-DEC-22 7VH4 1 JRNL REVDAT 1 28-SEP-22 7VH4 0 JRNL AUTH P.BADHWAR,S.H.KHAN,B.TANEJA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF A MYCOBACTERIAL JRNL TITL 2 OLIGORIBONUCLEASE REVEALS A UNIQUE C-TERMINAL TAIL THAT JRNL TITL 3 STABILIZES THE HOMODIMER. JRNL REF J.BIOL.CHEM. V. 298 02595 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36244449 JRNL DOI 10.1016/J.JBC.2022.102595 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2314 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5705 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.77000 REMARK 3 B22 (A**2) : -2.77000 REMARK 3 B33 (A**2) : 5.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.381 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.886 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5964 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5555 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8082 ; 1.422 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12853 ; 1.271 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 722 ; 6.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 366 ;33.156 ;21.749 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1061 ;13.907 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;20.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6657 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 D 3 181 C 3 181 5916 0.050 0.050 REMARK 3 2 D 3 181 B 3 181 5853 0.070 0.050 REMARK 3 3 D 3 181 A 3 181 5843 0.060 0.050 REMARK 3 4 C 3 181 B 3 181 5860 0.070 0.050 REMARK 3 5 C 3 181 A 3 181 5885 0.060 0.050 REMARK 3 6 B 2 181 A 2 181 5960 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7VH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-SEP-21. REMARK 100 THE DEPOSITION ID IS D_1300024597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7-8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI JUNGFRAU 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 59.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IGI REMARK 200 REMARK 200 REMARK: THIN, FLAT, SHEET-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM SODIUM HEPES, PH 7.5, 0.25 M REMARK 280 SODIUM ACETATE, 25 % V/V PEG-3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.91550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.28700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.28700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.95775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.28700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.28700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.87325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.28700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.28700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.95775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.28700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.28700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.87325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.91550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -50.28700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 50.28700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -36.95775 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 157 REMARK 465 HIS D 158 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLN C 155 REMARK 465 GLY C 156 REMARK 465 THR C 157 REMARK 465 HIS C 158 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 156 REMARK 465 THR B 157 REMARK 465 HIS B 158 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LYS A 154 REMARK 465 GLN A 155 REMARK 465 GLY A 156 REMARK 465 THR A 157 REMARK 465 HIS A 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 145 58.61 -159.03 REMARK 500 LYS C 145 57.55 -162.19 REMARK 500 LYS B 145 58.10 -159.99 REMARK 500 LYS A 145 57.54 -159.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 12 OD1 REMARK 620 2 HOH D 301 O 73.8 REMARK 620 3 HOH D 314 O 75.9 77.4 REMARK 620 4 HOH D 319 O 83.7 155.1 86.8 REMARK 620 5 HOH D 333 O 84.6 89.5 158.8 99.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 124 O REMARK 620 2 PHE D 127 O 85.2 REMARK 620 3 HOH C 317 O 155.1 119.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 306 O REMARK 620 2 GLU B 124 O 139.8 REMARK 620 3 PHE B 127 O 127.6 87.6 REMARK 620 4 HOH B 704 O 56.0 108.7 144.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 12 OD1 REMARK 620 2 GLU C 14 OE2 76.1 REMARK 620 3 HOH C 315 O 78.1 96.4 REMARK 620 4 HOH C 336 O 86.7 138.6 116.7 REMARK 620 N 1 2 3 DBREF1 7VH4 D 1 181 UNP A0A6D2W9V9_ECOLI DBREF2 7VH4 D A0A6D2W9V9 1 181 DBREF1 7VH4 C 1 181 UNP A0A6D2W9V9_ECOLI DBREF2 7VH4 C A0A6D2W9V9 1 181 DBREF1 7VH4 B 1 181 UNP A0A6D2W9V9_ECOLI DBREF2 7VH4 B A0A6D2W9V9 1 181 DBREF1 7VH4 A 1 181 UNP A0A6D2W9V9_ECOLI DBREF2 7VH4 A A0A6D2W9V9 1 181 SEQADV 7VH4 SER D 0 UNP A0A6D2W9V EXPRESSION TAG SEQADV 7VH4 SER C 0 UNP A0A6D2W9V EXPRESSION TAG SEQADV 7VH4 SER B 0 UNP A0A6D2W9V EXPRESSION TAG SEQADV 7VH4 SER A 0 UNP A0A6D2W9V EXPRESSION TAG SEQRES 1 D 182 SER MET SER ALA ASN GLU ASN ASN LEU ILE TRP ILE ASP SEQRES 2 D 182 LEU GLU MET THR GLY LEU ASP PRO GLU ARG ASP ARG ILE SEQRES 3 D 182 ILE GLU ILE ALA THR LEU VAL THR ASP ALA ASN LEU ASN SEQRES 4 D 182 ILE LEU ALA GLU GLY PRO THR ILE ALA VAL HIS GLN SER SEQRES 5 D 182 ASP GLU GLN LEU ALA LEU MET ASP ASP TRP ASN VAL ARG SEQRES 6 D 182 THR HIS THR ALA SER GLY LEU VAL GLU ARG VAL LYS ALA SEQRES 7 D 182 SER THR MET GLY ASP ARG GLU ALA GLU LEU ALA THR LEU SEQRES 8 D 182 GLU PHE LEU LYS GLN TRP VAL PRO ALA GLY LYS SER PRO SEQRES 9 D 182 ILE CYS GLY ASN SER ILE GLY GLN ASP ARG ARG PHE LEU SEQRES 10 D 182 PHE LYS TYR MET PRO GLU LEU GLU ALA TYR PHE HIS TYR SEQRES 11 D 182 ARG TYR LEU ASP VAL SER THR LEU LYS GLU LEU ALA ARG SEQRES 12 D 182 ARG TRP LYS PRO GLU ILE LEU ASP GLY PHE THR LYS GLN SEQRES 13 D 182 GLY THR HIS GLN ALA MET ASP ASP ILE ARG GLU SER VAL SEQRES 14 D 182 ALA GLU LEU ALA TYR TYR ARG GLU HIS PHE ILE LYS LEU SEQRES 1 C 182 SER MET SER ALA ASN GLU ASN ASN LEU ILE TRP ILE ASP SEQRES 2 C 182 LEU GLU MET THR GLY LEU ASP PRO GLU ARG ASP ARG ILE SEQRES 3 C 182 ILE GLU ILE ALA THR LEU VAL THR ASP ALA ASN LEU ASN SEQRES 4 C 182 ILE LEU ALA GLU GLY PRO THR ILE ALA VAL HIS GLN SER SEQRES 5 C 182 ASP GLU GLN LEU ALA LEU MET ASP ASP TRP ASN VAL ARG SEQRES 6 C 182 THR HIS THR ALA SER GLY LEU VAL GLU ARG VAL LYS ALA SEQRES 7 C 182 SER THR MET GLY ASP ARG GLU ALA GLU LEU ALA THR LEU SEQRES 8 C 182 GLU PHE LEU LYS GLN TRP VAL PRO ALA GLY LYS SER PRO SEQRES 9 C 182 ILE CYS GLY ASN SER ILE GLY GLN ASP ARG ARG PHE LEU SEQRES 10 C 182 PHE LYS TYR MET PRO GLU LEU GLU ALA TYR PHE HIS TYR SEQRES 11 C 182 ARG TYR LEU ASP VAL SER THR LEU LYS GLU LEU ALA ARG SEQRES 12 C 182 ARG TRP LYS PRO GLU ILE LEU ASP GLY PHE THR LYS GLN SEQRES 13 C 182 GLY THR HIS GLN ALA MET ASP ASP ILE ARG GLU SER VAL SEQRES 14 C 182 ALA GLU LEU ALA TYR TYR ARG GLU HIS PHE ILE LYS LEU SEQRES 1 B 182 SER MET SER ALA ASN GLU ASN ASN LEU ILE TRP ILE ASP SEQRES 2 B 182 LEU GLU MET THR GLY LEU ASP PRO GLU ARG ASP ARG ILE SEQRES 3 B 182 ILE GLU ILE ALA THR LEU VAL THR ASP ALA ASN LEU ASN SEQRES 4 B 182 ILE LEU ALA GLU GLY PRO THR ILE ALA VAL HIS GLN SER SEQRES 5 B 182 ASP GLU GLN LEU ALA LEU MET ASP ASP TRP ASN VAL ARG SEQRES 6 B 182 THR HIS THR ALA SER GLY LEU VAL GLU ARG VAL LYS ALA SEQRES 7 B 182 SER THR MET GLY ASP ARG GLU ALA GLU LEU ALA THR LEU SEQRES 8 B 182 GLU PHE LEU LYS GLN TRP VAL PRO ALA GLY LYS SER PRO SEQRES 9 B 182 ILE CYS GLY ASN SER ILE GLY GLN ASP ARG ARG PHE LEU SEQRES 10 B 182 PHE LYS TYR MET PRO GLU LEU GLU ALA TYR PHE HIS TYR SEQRES 11 B 182 ARG TYR LEU ASP VAL SER THR LEU LYS GLU LEU ALA ARG SEQRES 12 B 182 ARG TRP LYS PRO GLU ILE LEU ASP GLY PHE THR LYS GLN SEQRES 13 B 182 GLY THR HIS GLN ALA MET ASP ASP ILE ARG GLU SER VAL SEQRES 14 B 182 ALA GLU LEU ALA TYR TYR ARG GLU HIS PHE ILE LYS LEU SEQRES 1 A 182 SER MET SER ALA ASN GLU ASN ASN LEU ILE TRP ILE ASP SEQRES 2 A 182 LEU GLU MET THR GLY LEU ASP PRO GLU ARG ASP ARG ILE SEQRES 3 A 182 ILE GLU ILE ALA THR LEU VAL THR ASP ALA ASN LEU ASN SEQRES 4 A 182 ILE LEU ALA GLU GLY PRO THR ILE ALA VAL HIS GLN SER SEQRES 5 A 182 ASP GLU GLN LEU ALA LEU MET ASP ASP TRP ASN VAL ARG SEQRES 6 A 182 THR HIS THR ALA SER GLY LEU VAL GLU ARG VAL LYS ALA SEQRES 7 A 182 SER THR MET GLY ASP ARG GLU ALA GLU LEU ALA THR LEU SEQRES 8 A 182 GLU PHE LEU LYS GLN TRP VAL PRO ALA GLY LYS SER PRO SEQRES 9 A 182 ILE CYS GLY ASN SER ILE GLY GLN ASP ARG ARG PHE LEU SEQRES 10 A 182 PHE LYS TYR MET PRO GLU LEU GLU ALA TYR PHE HIS TYR SEQRES 11 A 182 ARG TYR LEU ASP VAL SER THR LEU LYS GLU LEU ALA ARG SEQRES 12 A 182 ARG TRP LYS PRO GLU ILE LEU ASP GLY PHE THR LYS GLN SEQRES 13 A 182 GLY THR HIS GLN ALA MET ASP ASP ILE ARG GLU SER VAL SEQRES 14 A 182 ALA GLU LEU ALA TYR TYR ARG GLU HIS PHE ILE LYS LEU HET ACT D 201 4 HET MG D 202 1 HET NA D 203 1 HET ACT C 201 4 HET PEG C 202 7 HET MG C 203 1 HET NA B 601 1 HET PEG B 602 7 HET ACT A 201 4 HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 6 MG 2(MG 2+) FORMUL 7 NA 2(NA 1+) FORMUL 9 PEG 2(C4 H10 O3) FORMUL 14 HOH *181(H2 O) HELIX 1 AA1 SER D 51 LEU D 57 1 7 HELIX 2 AA2 ASP D 59 SER D 69 1 11 HELIX 3 AA3 GLY D 70 SER D 78 1 9 HELIX 4 AA4 GLY D 81 GLN D 95 1 15 HELIX 5 AA5 ILE D 109 MET D 120 1 12 HELIX 6 AA6 MET D 120 PHE D 127 1 8 HELIX 7 AA7 VAL D 134 LYS D 145 1 12 HELIX 8 AA8 PRO D 146 GLY D 151 5 6 HELIX 9 AA9 ALA D 160 PHE D 178 1 19 HELIX 10 AB1 SER C 51 LEU C 57 1 7 HELIX 11 AB2 ASP C 59 SER C 69 1 11 HELIX 12 AB3 GLY C 70 SER C 78 1 9 HELIX 13 AB4 GLY C 81 LYS C 94 1 14 HELIX 14 AB5 ILE C 109 MET C 120 1 12 HELIX 15 AB6 MET C 120 PHE C 127 1 8 HELIX 16 AB7 VAL C 134 LYS C 145 1 12 HELIX 17 AB8 PRO C 146 GLY C 151 5 6 HELIX 18 AB9 ALA C 160 PHE C 178 1 19 HELIX 19 AC1 SER B 51 LEU B 57 1 7 HELIX 20 AC2 ASP B 59 SER B 69 1 11 HELIX 21 AC3 GLY B 70 SER B 78 1 9 HELIX 22 AC4 GLY B 81 GLN B 95 1 15 HELIX 23 AC5 ILE B 109 MET B 120 1 12 HELIX 24 AC6 MET B 120 PHE B 127 1 8 HELIX 25 AC7 VAL B 134 LYS B 145 1 12 HELIX 26 AC8 PRO B 146 GLY B 151 5 6 HELIX 27 AC9 ALA B 160 PHE B 178 1 19 HELIX 28 AD1 SER A 51 LEU A 57 1 7 HELIX 29 AD2 ASP A 59 SER A 69 1 11 HELIX 30 AD3 GLY A 70 SER A 78 1 9 HELIX 31 AD4 GLY A 81 LYS A 94 1 14 HELIX 32 AD5 ILE A 109 MET A 120 1 12 HELIX 33 AD6 MET A 120 PHE A 127 1 8 HELIX 34 AD7 VAL A 134 LYS A 145 1 12 HELIX 35 AD8 PRO A 146 GLY A 151 5 6 HELIX 36 AD9 ALA A 160 PHE A 178 1 19 SHEET 1 AA1 3 ILE D 39 GLU D 42 0 SHEET 2 AA1 3 ILE D 25 THR D 33 -1 N VAL D 32 O ALA D 41 SHEET 3 AA1 3 ILE D 46 ALA D 47 -1 O ILE D 46 N ILE D 28 SHEET 1 AA2 5 ILE D 39 GLU D 42 0 SHEET 2 AA2 5 ILE D 25 THR D 33 -1 N VAL D 32 O ALA D 41 SHEET 3 AA2 5 LEU D 8 MET D 15 -1 N TRP D 10 O LEU D 31 SHEET 4 AA2 5 ILE D 104 GLY D 106 1 O CYS D 105 N ILE D 9 SHEET 5 AA2 5 TYR D 131 ASP D 133 1 O LEU D 132 N ILE D 104 SHEET 1 AA3 3 ILE C 39 GLU C 42 0 SHEET 2 AA3 3 ILE C 25 THR C 33 -1 N VAL C 32 O ALA C 41 SHEET 3 AA3 3 ILE C 46 ALA C 47 -1 O ILE C 46 N ILE C 28 SHEET 1 AA4 5 ILE C 39 GLU C 42 0 SHEET 2 AA4 5 ILE C 25 THR C 33 -1 N VAL C 32 O ALA C 41 SHEET 3 AA4 5 LEU C 8 MET C 15 -1 N TRP C 10 O LEU C 31 SHEET 4 AA4 5 ILE C 104 GLY C 106 1 O CYS C 105 N ILE C 9 SHEET 5 AA4 5 TYR C 131 ASP C 133 1 O LEU C 132 N ILE C 104 SHEET 1 AA5 3 ILE B 39 GLU B 42 0 SHEET 2 AA5 3 ILE B 25 THR B 33 -1 N VAL B 32 O ALA B 41 SHEET 3 AA5 3 ILE B 46 ALA B 47 -1 O ILE B 46 N ILE B 28 SHEET 1 AA6 5 ILE B 39 GLU B 42 0 SHEET 2 AA6 5 ILE B 25 THR B 33 -1 N VAL B 32 O ALA B 41 SHEET 3 AA6 5 LEU B 8 MET B 15 -1 N TRP B 10 O LEU B 31 SHEET 4 AA6 5 ILE B 104 GLY B 106 1 O CYS B 105 N ILE B 11 SHEET 5 AA6 5 TYR B 131 ASP B 133 1 O LEU B 132 N ILE B 104 SHEET 1 AA7 3 ILE A 39 GLU A 42 0 SHEET 2 AA7 3 ILE A 25 THR A 33 -1 N VAL A 32 O ALA A 41 SHEET 3 AA7 3 ILE A 46 ALA A 47 -1 O ILE A 46 N ILE A 28 SHEET 1 AA8 5 ILE A 39 GLU A 42 0 SHEET 2 AA8 5 ILE A 25 THR A 33 -1 N VAL A 32 O ALA A 41 SHEET 3 AA8 5 LEU A 8 MET A 15 -1 N TRP A 10 O LEU A 31 SHEET 4 AA8 5 ILE A 104 GLY A 106 1 O CYS A 105 N ILE A 9 SHEET 5 AA8 5 TYR A 131 ASP A 133 1 O LEU A 132 N ILE A 104 LINK OD1 ASP D 12 MG MG D 202 1555 1555 2.83 LINK O GLU D 124 NA NA D 203 1555 1555 3.14 LINK O PHE D 127 NA NA D 203 1555 1555 2.59 LINK MG MG D 202 O HOH D 301 1555 1555 2.70 LINK MG MG D 202 O HOH D 314 1555 1555 2.63 LINK MG MG D 202 O HOH D 319 1555 1555 2.60 LINK MG MG D 202 O HOH D 333 1555 1555 2.41 LINK NA NA D 203 O HOH C 317 1555 6555 2.33 LINK O HOH D 306 NA NA B 601 1555 1555 2.32 LINK OD1 ASP C 12 MG MG C 203 1555 1555 2.64 LINK OE2 GLU C 14 MG MG C 203 1555 1555 2.79 LINK MG MG C 203 O HOH C 315 1555 1555 2.84 LINK MG MG C 203 O HOH C 336 1555 1555 2.22 LINK O GLU B 124 NA NA B 601 1555 1555 3.00 LINK O PHE B 127 NA NA B 601 1555 1555 2.52 LINK NA NA B 601 O HOH B 704 1555 1555 3.18 CRYST1 100.574 100.574 147.831 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006764 0.00000