HEADER BIOSYNTHETIC PROTEIN 27-SEP-21 7VIL TITLE SOLUTION STRUCTURE OF SUBUNIT EPSILON OF THE MYCOBACTERIUM ABSCESSUS TITLE 2 F-ATP SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE EPSILON CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP SYNTHASE F1 SECTOR EPSILON SUBUNIT,F-ATPASE EPSILON COMPND 5 SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTEROIDES ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: ATPC, D2E76_04560, ERS075656_01892; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS F-ATP SYNTHASE, SUBUNIT EPSILON, BIOENERGETICS, MYCOBACTERIUM KEYWDS 2 ABSCESSUS, MEMBRANE ENZYME, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SHIN,G.GRUEBER,C.F.WONG REVDAT 3 15-MAY-24 7VIL 1 REMARK REVDAT 2 19-APR-23 7VIL 1 JRNL REVDAT 1 05-OCT-22 7VIL 0 JRNL AUTH J.SHIN,A.HARIKISHORE,C.F.WONG,P.RAGUNATHAN,T.DICK,G.GRUBER JRNL TITL ATOMIC SOLUTION STRUCTURE OF MYCOBACTERIUM ABSCESSUS F-ATP JRNL TITL 2 SYNTHASE SUBUNIT EPSILON AND IDENTIFICATION OF EP1MABF1 AS A JRNL TITL 3 TARGETED INHIBITOR. JRNL REF FEBS J. V. 289 6308 2022 JRNL REFN ISSN 1742-464X JRNL PMID 35612822 JRNL DOI 10.1111/FEBS.16536 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024733. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-15N] F-ATP SYNTHASE REMARK 210 SUBUNIT EPSILON, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.01 % W/V SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.5 MM REMARK 210 [U-13C; U-15N] F-ATP SYNTHASE REMARK 210 SUBUNIT EPSILON, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.01 % W/V SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, NMRDRAW, REMARK 210 SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 16 117.17 -167.88 REMARK 500 1 HIS A 36 39.27 178.83 REMARK 500 1 THR A 74 42.39 -154.27 REMARK 500 2 SER A 16 117.32 -172.08 REMARK 500 2 HIS A 36 39.20 179.39 REMARK 500 2 GLU A 55 108.04 -58.31 REMARK 500 2 THR A 74 40.37 -158.07 REMARK 500 3 ILE A 14 -63.30 -106.33 REMARK 500 3 SER A 16 117.34 -167.81 REMARK 500 3 HIS A 36 40.59 175.69 REMARK 500 4 ILE A 14 -62.60 -104.99 REMARK 500 4 HIS A 36 39.62 176.66 REMARK 500 4 LEU A 40 138.26 -173.86 REMARK 500 4 GLU A 55 107.88 -57.75 REMARK 500 4 THR A 74 42.29 -165.07 REMARK 500 5 SER A 16 117.26 -172.09 REMARK 500 5 HIS A 36 41.58 173.01 REMARK 500 5 THR A 74 42.41 -165.12 REMARK 500 6 SER A 16 117.31 -170.30 REMARK 500 6 HIS A 36 77.63 172.09 REMARK 500 6 GLU A 55 108.03 -57.87 REMARK 500 6 THR A 74 37.06 -151.63 REMARK 500 7 SER A 16 117.32 -170.18 REMARK 500 7 HIS A 36 40.17 175.08 REMARK 500 7 GLU A 55 108.03 -58.31 REMARK 500 7 THR A 74 41.86 -165.12 REMARK 500 8 ILE A 14 -62.72 -109.97 REMARK 500 8 SER A 16 117.30 -172.05 REMARK 500 8 HIS A 36 40.47 175.36 REMARK 500 8 THR A 74 42.20 -163.40 REMARK 500 8 GLU A 101 30.04 -98.44 REMARK 500 9 ILE A 14 -63.29 -103.13 REMARK 500 9 SER A 16 117.30 -168.39 REMARK 500 9 HIS A 36 39.06 -179.71 REMARK 500 9 THR A 74 40.37 -156.32 REMARK 500 10 ILE A 14 -60.26 -106.52 REMARK 500 10 SER A 16 117.12 -171.53 REMARK 500 10 HIS A 36 38.53 -179.22 REMARK 500 10 LEU A 40 147.43 -171.30 REMARK 500 10 GLU A 55 107.97 -58.25 REMARK 500 10 THR A 74 42.31 -165.14 REMARK 500 11 SER A 16 117.24 -168.34 REMARK 500 11 HIS A 36 40.12 176.69 REMARK 500 11 GLU A 55 108.01 -57.47 REMARK 500 11 THR A 74 42.35 -165.07 REMARK 500 12 HIS A 36 44.76 178.90 REMARK 500 13 ILE A 14 -63.74 -102.48 REMARK 500 13 SER A 16 117.30 -166.77 REMARK 500 13 HIS A 36 40.83 174.09 REMARK 500 13 THR A 74 42.37 -160.28 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36446 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF SUBUNIT EPSILON OF THE MYCOBACTERIUM REMARK 900 ABSCESSUS F-ATP SYNTHASE DBREF1 7VIL A 1 120 UNP A0A0U0YP27_9MYCO DBREF2 7VIL A A0A0U0YP27 2 121 SEQADV 7VIL MET A -6 UNP A0A0U0YP2 INITIATING METHIONINE SEQADV 7VIL HIS A -5 UNP A0A0U0YP2 EXPRESSION TAG SEQADV 7VIL HIS A -4 UNP A0A0U0YP2 EXPRESSION TAG SEQADV 7VIL HIS A -3 UNP A0A0U0YP2 EXPRESSION TAG SEQADV 7VIL HIS A -2 UNP A0A0U0YP2 EXPRESSION TAG SEQADV 7VIL HIS A -1 UNP A0A0U0YP2 EXPRESSION TAG SEQADV 7VIL HIS A 0 UNP A0A0U0YP2 EXPRESSION TAG SEQRES 1 A 127 MET HIS HIS HIS HIS HIS HIS SER GLU ILE ASP VAL GLU SEQRES 2 A 127 ILE VAL ALA VAL GLU ARG GLU ILE TRP SER GLY LYS ALA SEQRES 3 A 127 THR PHE VAL PHE THR ARG THR THR SER GLY GLU ILE GLY SEQRES 4 A 127 ILE LEU PRO HIS HIS ILE PRO LEU VAL ALA GLN LEU VAL SEQRES 5 A 127 ASP ASP ALA ALA VAL LYS ILE GLU ARG GLU GLY SER ASP SEQRES 6 A 127 ASP LEU TRP TRP ALA ILE ASP GLY GLY PHE LEU SER ILE SEQRES 7 A 127 THR ASP THR LYS VAL SER ILE LEU ALA GLU SER ALA GLN SEQRES 8 A 127 ALA ARG ALA ASP ILE ASP GLU ALA LYS ALA LYS THR ASP SEQRES 9 A 127 SER GLY SER GLU ASP PRO ARG VAL ALA ALA GLN GLY ARG SEQRES 10 A 127 ALA ARG LEU ARG ALA LEU GLY GLN THR VAL HELIX 1 AA1 ASP A 90 SER A 100 1 11 HELIX 2 AA2 ASP A 102 GLY A 117 1 16 SHEET 1 AA1 5 GLU A 13 ALA A 19 0 SHEET 2 AA1 5 ILE A 3 ALA A 9 -1 N ILE A 7 O ILE A 14 SHEET 3 AA1 5 VAL A 76 ALA A 80 1 O ILE A 78 N GLU A 6 SHEET 4 AA1 5 PHE A 68 ILE A 71 -1 N PHE A 68 O LEU A 79 SHEET 5 AA1 5 LEU A 40 GLN A 43 -1 N LEU A 40 O ILE A 71 SHEET 1 AA2 5 GLY A 29 ILE A 33 0 SHEET 2 AA2 5 PHE A 21 THR A 26 -1 N VAL A 22 O ILE A 33 SHEET 3 AA2 5 ALA A 49 ARG A 54 -1 O GLU A 53 N PHE A 21 SHEET 4 AA2 5 SER A 57 ILE A 64 -1 O LEU A 60 N ILE A 52 SHEET 5 AA2 5 ALA A 83 ALA A 85 -1 O GLN A 84 N ALA A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1