HEADER VIRAL PROTEIN 29-SEP-21 7VK7 TITLE CRYSTAL STRUCTURE OF SARS-COV-2 MPRO AT 2.4 A RESOLUTION-11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MAIN PROTEASE; COMPND 5 EC: 3.4.22.69; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, MAIN PROTEASE, SFX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,C.DAG REVDAT 2 29-NOV-23 7VK7 1 REMARK REVDAT 1 26-JAN-22 7VK7 0 JRNL AUTH O.GUVEN,M.GUL,E.AYAN,J.A.JOHNSON,B.CAKILKAYA,G.USTA, JRNL AUTH 2 F.B.ERTEM,N.TOKAY,B.YUKSEL,O.GOCENLER,C.BUYUKDAG,S.BOTHA, JRNL AUTH 3 G.KETAWALA,Z.SU,B.HAYES,F.POITEVIN,A.BATYUK,C.H.YOON, JRNL AUTH 4 C.KUPITZ,S.DURDAGI,R.G.SIERRA,H.DEMIRCI JRNL TITL CASE STUDY OF HIGH-THROUGHPUT DRUG SCREENING AND REMOTE DATA JRNL TITL 2 COLLECTION FOR SARS-COV-2 MAIN PROTEASE BY USING SERIAL JRNL TITL 3 FEMTOSECOND X-RAY CRYSTALLOGRAPHY JRNL REF CRYSTALS V. 11 2021 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST11121579 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9300 - 5.3300 0.99 2786 146 0.1955 0.1881 REMARK 3 2 5.3300 - 4.2400 1.00 2673 143 0.1710 0.1938 REMARK 3 3 4.2400 - 3.7000 1.00 2651 141 0.1812 0.2030 REMARK 3 4 3.7000 - 3.3600 1.00 2636 142 0.2035 0.2533 REMARK 3 5 3.3600 - 3.1200 1.00 2622 138 0.2348 0.3302 REMARK 3 6 3.1200 - 2.9400 1.00 2601 138 0.2371 0.2725 REMARK 3 7 2.9400 - 2.7900 1.00 2607 142 0.2793 0.3753 REMARK 3 8 2.7900 - 2.6700 1.00 2594 134 0.2828 0.3170 REMARK 3 9 2.6700 - 2.5700 1.00 2587 138 0.3015 0.3585 REMARK 3 10 2.5700 - 2.4800 1.00 2568 142 0.3776 0.4723 REMARK 3 11 2.4800 - 2.4000 1.00 2599 137 0.3353 0.3579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3732 8.1696 -19.0292 REMARK 3 T TENSOR REMARK 3 T11: 0.3881 T22: 0.5577 REMARK 3 T33: 0.4167 T12: -0.0345 REMARK 3 T13: -0.0097 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.3526 L22: 0.9673 REMARK 3 L33: 1.9661 L12: -0.5706 REMARK 3 L13: 0.5761 L23: 0.2486 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.0229 S13: -0.1021 REMARK 3 S21: 0.0837 S22: -0.0493 S23: 0.0643 REMARK 3 S31: -0.0330 S32: -0.1580 S33: 0.0426 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4841 8.1030 -24.2061 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.5646 REMARK 3 T33: 0.4666 T12: 0.0609 REMARK 3 T13: 0.0466 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.5838 L22: 0.6701 REMARK 3 L33: 2.4499 L12: 0.3960 REMARK 3 L13: 1.0571 L23: 0.8978 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: -0.3489 S13: 0.0539 REMARK 3 S21: 0.0998 S22: -0.1081 S23: 0.1909 REMARK 3 S31: 0.0276 S32: -0.4636 S33: 0.0468 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2547 8.6027 -20.6151 REMARK 3 T TENSOR REMARK 3 T11: 0.4235 T22: 0.5444 REMARK 3 T33: 0.4549 T12: 0.0863 REMARK 3 T13: -0.1143 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 9.6014 L22: 0.8948 REMARK 3 L33: 8.1258 L12: -2.3041 REMARK 3 L13: -1.3360 L23: -1.3182 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: 0.2712 S13: -0.9963 REMARK 3 S21: -0.2012 S22: 0.3430 S23: -0.4012 REMARK 3 S31: 0.1805 S32: -0.2272 S33: -0.2657 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3630 4.3976 -32.9797 REMARK 3 T TENSOR REMARK 3 T11: 0.4145 T22: 0.5863 REMARK 3 T33: 0.5672 T12: 0.0223 REMARK 3 T13: 0.0630 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.0587 L22: 0.2738 REMARK 3 L33: 1.1334 L12: 1.1528 REMARK 3 L13: 1.1091 L23: 0.0398 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: 0.5012 S13: -0.4199 REMARK 3 S21: -0.1964 S22: -0.0329 S23: -0.3436 REMARK 3 S31: 0.3228 S32: -0.0433 S33: 0.1542 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6189 8.7759 -34.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.3319 T22: 0.5956 REMARK 3 T33: 0.5783 T12: -0.0139 REMARK 3 T13: 0.0368 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 7.2363 L22: 3.4066 REMARK 3 L33: 3.3565 L12: -1.5797 REMARK 3 L13: -1.6097 L23: 0.6573 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: -0.3841 S13: 0.3938 REMARK 3 S21: 0.0951 S22: 0.0520 S23: -0.1076 REMARK 3 S31: 0.0132 S32: 0.1211 S33: 0.0566 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6571 11.4095 -0.5775 REMARK 3 T TENSOR REMARK 3 T11: 0.4062 T22: 0.4341 REMARK 3 T33: 0.5522 T12: 0.0445 REMARK 3 T13: -0.0482 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 3.0684 L22: 1.9625 REMARK 3 L33: 2.6986 L12: -0.9459 REMARK 3 L13: 0.8659 L23: -0.7187 REMARK 3 S TENSOR REMARK 3 S11: 0.2991 S12: -0.1370 S13: 0.3645 REMARK 3 S21: 0.0636 S22: -0.4254 S23: -0.3914 REMARK 3 S31: -0.1631 S32: -0.0141 S33: 0.0599 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8603 16.9565 10.0634 REMARK 3 T TENSOR REMARK 3 T11: 0.6815 T22: 0.6019 REMARK 3 T33: 0.6915 T12: -0.0733 REMARK 3 T13: -0.1629 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 5.7188 L22: 4.7759 REMARK 3 L33: 3.6048 L12: -0.2568 REMARK 3 L13: 0.1593 L23: -0.2650 REMARK 3 S TENSOR REMARK 3 S11: -0.1795 S12: -0.3586 S13: 0.6419 REMARK 3 S21: 0.4180 S22: 0.0036 S23: -0.9378 REMARK 3 S31: -0.8575 S32: 0.6438 S33: 0.1971 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0508 1.2248 -5.1256 REMARK 3 T TENSOR REMARK 3 T11: 0.4537 T22: 0.5185 REMARK 3 T33: 0.5543 T12: -0.0239 REMARK 3 T13: -0.0553 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.3530 L22: 2.7606 REMARK 3 L33: 5.0873 L12: -3.0580 REMARK 3 L13: -0.0639 L23: 0.5358 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.1313 S13: -0.0927 REMARK 3 S21: 0.0217 S22: -0.1876 S23: 0.0874 REMARK 3 S31: -0.0407 S32: 0.4565 S33: 0.0741 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5368 5.6033 -4.7609 REMARK 3 T TENSOR REMARK 3 T11: 0.5947 T22: 0.7135 REMARK 3 T33: 0.7450 T12: 0.1925 REMARK 3 T13: -0.0075 T23: -0.1687 REMARK 3 L TENSOR REMARK 3 L11: 3.4947 L22: 7.3914 REMARK 3 L33: 7.1612 L12: -1.1515 REMARK 3 L13: 2.8891 L23: 0.8739 REMARK 3 S TENSOR REMARK 3 S11: 0.1471 S12: 0.3122 S13: 0.6232 REMARK 3 S21: -0.0933 S22: -0.3935 S23: 0.2753 REMARK 3 S31: -0.2212 S32: 0.1343 S33: 0.4450 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1688 -2.4255 -5.0013 REMARK 3 T TENSOR REMARK 3 T11: 0.4192 T22: 0.5819 REMARK 3 T33: 0.5388 T12: 0.0515 REMARK 3 T13: -0.0208 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.1641 L22: 3.4452 REMARK 3 L33: 4.7392 L12: 1.4707 REMARK 3 L13: 1.6472 L23: 3.7907 REMARK 3 S TENSOR REMARK 3 S11: -0.1292 S12: 0.1171 S13: -0.0953 REMARK 3 S21: -0.1029 S22: 0.4426 S23: -0.3289 REMARK 3 S31: -0.0130 S32: 0.5323 S33: -0.3763 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2049 -25.1225 -19.9493 REMARK 3 T TENSOR REMARK 3 T11: 0.8025 T22: 0.5894 REMARK 3 T33: 0.6246 T12: 0.2162 REMARK 3 T13: -0.1267 T23: -0.0985 REMARK 3 L TENSOR REMARK 3 L11: 4.9698 L22: 5.5846 REMARK 3 L33: 7.2666 L12: 0.0554 REMARK 3 L13: -0.8191 L23: 2.9121 REMARK 3 S TENSOR REMARK 3 S11: -0.3528 S12: -0.2082 S13: -0.8913 REMARK 3 S21: 0.8541 S22: 0.5521 S23: -0.7966 REMARK 3 S31: 0.6442 S32: 0.3504 S33: 0.0577 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 237 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1934 -17.9929 -17.2041 REMARK 3 T TENSOR REMARK 3 T11: 0.6695 T22: 0.5771 REMARK 3 T33: 0.5629 T12: -0.0040 REMARK 3 T13: 0.0539 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 5.3947 L22: 7.0564 REMARK 3 L33: 7.8542 L12: 1.5072 REMARK 3 L13: 2.8662 L23: 5.5546 REMARK 3 S TENSOR REMARK 3 S11: -0.2429 S12: -0.1141 S13: 0.0484 REMARK 3 S21: 0.4794 S22: 0.1364 S23: 0.1714 REMARK 3 S31: 0.6563 S32: -0.1484 S33: 0.0860 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : SLAC EPIX10K 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7CWC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE, 0.1M REMARK 280 TRIS 8.5, 30% W/V PEG 4000, PH 8.5, BATCH MODE, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.75000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.75000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 301 REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 302 REMARK 465 VAL B 303 REMARK 465 THR B 304 REMARK 465 PHE B 305 REMARK 465 GLN B 306 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ALA A 7 N CA C O CB REMARK 480 TYR A 118 N CA C O CB CG CD1 REMARK 480 TYR A 118 CD2 CE1 CE2 CZ OH REMARK 480 SER A 147 N CA C O CB OG REMARK 480 ARG A 222 N CA C O CB CG CD REMARK 480 ARG A 222 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 226 OD2 ASP B 229 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -120.93 52.62 REMARK 500 ASN A 84 -118.82 59.19 REMARK 500 TYR A 154 -104.54 57.83 REMARK 500 ARG A 217 11.49 -140.43 REMARK 500 ASP B 33 -118.65 52.50 REMARK 500 ASN B 84 -117.10 53.24 REMARK 500 TYR B 154 -102.71 58.71 REMARK 500 ARG B 279 -167.85 -126.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 429 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH B 430 DISTANCE = 8.78 ANGSTROMS DBREF 7VK7 A 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 DBREF 7VK7 B 1 306 UNP P0DTC1 R1A_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN FORMUL 3 HOH *61(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 GLY A 215 1 16 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 THR A 257 1 8 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 CYS A 300 1 9 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 SER B 46 LEU B 50 5 5 HELIX 14 AB5 ASN B 53 LYS B 61 1 9 HELIX 15 AB6 SER B 62 HIS B 64 5 3 HELIX 16 AB7 ILE B 200 ASN B 214 1 15 HELIX 17 AB8 THR B 226 TYR B 237 1 12 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 GLY B 275 1 16 HELIX 21 AC3 THR B 292 CYS B 300 1 9 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O GLY A 29 N VAL A 18 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N HIS A 164 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N VAL B 68 O LEU B 75 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 CRYST1 69.100 104.300 105.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009479 0.00000