HEADER RNA BINDING PROTEIN 29-SEP-21 7VK9 TITLE CRYSTAL STRUCTURE OF XCAS9 P411T COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPCAS9,SPYCAS9; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES SEROTYPE M1; SOURCE 3 ORGANISM_TAXID: 301447; SOURCE 4 GENE: CAS9, CSN1, SPY_1046; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CRISPR-CAS9 VARIANT, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.BAO,H.Y.LIU,Y.Z.LUO,Y.J.SONG REVDAT 3 29-NOV-23 7VK9 1 REMARK REVDAT 2 19-OCT-22 7VK9 1 JRNL REVDAT 1 06-APR-22 7VK9 0 JRNL AUTH H.LIU,Y.ZHOU,Y.SONG,Q.ZHANG,Y.KAN,X.TANG,Q.XIAO,Q.XIANG, JRNL AUTH 2 H.LIU,Y.LUO,R.BAO JRNL TITL STRUCTURAL AND DYNAMICS STUDIES OF THE SPCAS9 VARIANT JRNL TITL 2 PROVIDE INSIGHTS INTO THE REGULATORY ROLE OF THE REC1 DOMAIN JRNL REF ACS CATALYSIS V. 12 8687 2022 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.2C01804 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 65941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9800 - 6.9800 0.98 4663 152 0.1712 0.2087 REMARK 3 2 6.9800 - 5.5400 1.00 4638 143 0.2096 0.2448 REMARK 3 3 5.5400 - 4.8400 1.00 4595 145 0.1667 0.2144 REMARK 3 4 4.8400 - 4.4000 1.00 4591 145 0.1453 0.1868 REMARK 3 5 4.4000 - 4.0900 1.00 4586 140 0.1534 0.1700 REMARK 3 6 4.0900 - 3.8500 1.00 4568 143 0.1649 0.1892 REMARK 3 7 3.8500 - 3.6500 1.00 4528 142 0.1796 0.2361 REMARK 3 8 3.6500 - 3.4900 1.00 4582 142 0.1935 0.2524 REMARK 3 9 3.4900 - 3.3600 1.00 4536 140 0.2179 0.2611 REMARK 3 10 3.3600 - 3.2400 1.00 4542 144 0.2319 0.3121 REMARK 3 11 3.2400 - 3.1400 1.00 4546 141 0.2511 0.3091 REMARK 3 12 3.1400 - 3.0500 1.00 4520 141 0.2732 0.3146 REMARK 3 13 3.0500 - 2.9700 1.00 4514 140 0.2899 0.3369 REMARK 3 14 2.9700 - 2.9000 1.00 4531 143 0.3128 0.3361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 10614 REMARK 3 ANGLE : 1.201 14273 REMARK 3 CHIRALITY : 0.075 1591 REMARK 3 PLANARITY : 0.006 1829 REMARK 3 DIHEDRAL : 22.984 4089 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VK9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4CMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE PH 7.0, 1M REMARK 280 SODIUM CITRATE TRIBASIC DEHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.66167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.32333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 95.32333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.66167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 GLU A 129 REMARK 465 ASP A 130 REMARK 465 LYS A 131 REMARK 465 LYS A 132 REMARK 465 HIS A 133 REMARK 465 GLU A 134 REMARK 465 ARG A 135 REMARK 465 GLY A 478 REMARK 465 ASN A 479 REMARK 465 SER A 480 REMARK 465 ARG A 481 REMARK 465 PHE A 482 REMARK 465 ALA A 483 REMARK 465 TRP A 484 REMARK 465 MET A 485 REMARK 465 THR A 486 REMARK 465 ARG A 487 REMARK 465 LYS A 488 REMARK 465 SER A 489 REMARK 465 GLU A 490 REMARK 465 GLU A 491 REMARK 465 THR A 492 REMARK 465 ILE A 493 REMARK 465 THR A 494 REMARK 465 PRO A 495 REMARK 465 TRP A 496 REMARK 465 ASN A 497 REMARK 465 PHE A 498 REMARK 465 GLU A 499 REMARK 465 LYS A 500 REMARK 465 VAL A 501 REMARK 465 VAL A 502 REMARK 465 ASP A 503 REMARK 465 LYS A 504 REMARK 465 GLY A 505 REMARK 465 ALA A 506 REMARK 465 SER A 507 REMARK 465 ALA A 508 REMARK 465 GLN A 509 REMARK 465 SER A 510 REMARK 465 PHE A 511 REMARK 465 ILE A 512 REMARK 465 GLU A 513 REMARK 465 ARG A 514 REMARK 465 MET A 515 REMARK 465 THR A 516 REMARK 465 GLY A 1124 REMARK 465 PHE A 1125 REMARK 465 SER A 1126 REMARK 465 LYS A 1127 REMARK 465 GLU A 1128 REMARK 465 SER A 1129 REMARK 465 ILE A 1130 REMARK 465 LEU A 1131 REMARK 465 PRO A 1132 REMARK 465 LYS A 1133 REMARK 465 ARG A 1134 REMARK 465 ASN A 1135 REMARK 465 SER A 1136 REMARK 465 ASP A 1137 REMARK 465 LYS A 1138 REMARK 465 LEU A 1139 REMARK 465 ILE A 1140 REMARK 465 ALA A 1141 REMARK 465 ARG A 1142 REMARK 465 LYS A 1143 REMARK 465 LYS A 1144 REMARK 465 ASP A 1145 REMARK 465 TRP A 1146 REMARK 465 ASP A 1147 REMARK 465 PRO A 1148 REMARK 465 LYS A 1149 REMARK 465 LYS A 1150 REMARK 465 TYR A 1151 REMARK 465 GLY A 1152 REMARK 465 GLY A 1153 REMARK 465 PHE A 1154 REMARK 465 ASP A 1155 REMARK 465 GLU A 1170 REMARK 465 LYS A 1171 REMARK 465 GLY A 1172 REMARK 465 LYS A 1173 REMARK 465 SER A 1174 REMARK 465 LYS A 1175 REMARK 465 LYS A 1176 REMARK 465 GLY A 1386 REMARK 465 GLY A 1387 REMARK 465 ASP A 1388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 517 CG OD1 ND2 REMARK 470 LYS A 590 CG CD CE NZ REMARK 470 LYS A1208 CG CD CE NZ REMARK 470 LYS A1211 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 1230 OE2 GLU A 1361 1.85 REMARK 500 NZ LYS A 1345 O ASP A 1348 1.88 REMARK 500 NZ LYS A 1275 O HOH A 1401 2.06 REMARK 500 OG1 THR A 269 OE1 GLU A 390 2.14 REMARK 500 OE2 GLU A 653 NZ LYS A 672 2.18 REMARK 500 OD2 ASP A 74 OH TYR A 1221 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 604 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 GLU A 604 N - CA - C ANGL. DEV. = 28.8 DEGREES REMARK 500 PHE A1057 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 114 91.66 -169.52 REMARK 500 LEU A 126 58.99 -109.50 REMARK 500 VAL A 127 -20.51 -144.32 REMARK 500 ASN A 219 63.27 -118.07 REMARK 500 SER A 233 63.87 -113.90 REMARK 500 ARG A 235 52.72 -101.34 REMARK 500 ALA A 335 60.50 -116.18 REMARK 500 LEU A 363 52.40 -140.54 REMARK 500 LYS A 366 7.81 -67.94 REMARK 500 PHE A 425 45.72 -142.72 REMARK 500 TYR A 471 75.48 -107.03 REMARK 500 CYS A 594 63.51 60.63 REMARK 500 GLU A 604 -69.77 -99.70 REMARK 500 ARG A 674 76.25 -106.54 REMARK 500 ASP A 706 58.09 -151.77 REMARK 500 ASN A 889 -143.59 -122.70 REMARK 500 ASP A 967 35.98 80.93 REMARK 500 PHE A 992 59.01 -113.84 REMARK 500 ARG A 996 -31.46 -32.17 REMARK 500 PHE A1028 11.18 -145.63 REMARK 500 GLU A1048 2.14 -64.50 REMARK 500 ALA A1052 47.93 -90.38 REMARK 500 MET A1109 113.36 -31.97 REMARK 500 THR A1122 -10.60 -144.02 REMARK 500 ALA A1167 -176.97 -172.47 REMARK 500 ALA A1204 13.88 -64.20 REMARK 500 LEU A1226 -143.41 -119.46 REMARK 500 LYS A1264 26.24 -69.28 REMARK 500 PHE A1347 -135.25 58.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1492 DISTANCE = 6.86 ANGSTROMS DBREF 7VK9 A 21 1388 UNP Q99ZW2 CAS9_STRP1 1 1368 SEQADV 7VK9 THR A 282 UNP Q99ZW2 ALA 262 ENGINEERED MUTATION SEQADV 7VK9 LEU A 344 UNP Q99ZW2 ARG 324 ENGINEERED MUTATION SEQADV 7VK9 ILE A 429 UNP Q99ZW2 SER 409 ENGINEERED MUTATION SEQADV 7VK9 THR A 431 UNP Q99ZW2 PRO 411 ENGINEERED MUTATION SEQADV 7VK9 LYS A 500 UNP Q99ZW2 GLU 480 ENGINEERED MUTATION SEQADV 7VK9 ASP A 563 UNP Q99ZW2 GLU 543 ENGINEERED MUTATION SEQADV 7VK9 ILE A 714 UNP Q99ZW2 MET 694 ENGINEERED MUTATION SEQADV 7VK9 VAL A 1239 UNP Q99ZW2 GLU 1219 ENGINEERED MUTATION SEQRES 1 A 1368 MET ASP LYS LYS TYR SER ILE GLY LEU ASP ILE GLY THR SEQRES 2 A 1368 ASN SER VAL GLY TRP ALA VAL ILE THR ASP GLU TYR LYS SEQRES 3 A 1368 VAL PRO SER LYS LYS PHE LYS VAL LEU GLY ASN THR ASP SEQRES 4 A 1368 ARG HIS SER ILE LYS LYS ASN LEU ILE GLY ALA LEU LEU SEQRES 5 A 1368 PHE ASP SER GLY GLU THR ALA GLU ALA THR ARG LEU LYS SEQRES 6 A 1368 ARG THR ALA ARG ARG ARG TYR THR ARG ARG LYS ASN ARG SEQRES 7 A 1368 ILE CYS TYR LEU GLN GLU ILE PHE SER ASN GLU MET ALA SEQRES 8 A 1368 LYS VAL ASP ASP SER PHE PHE HIS ARG LEU GLU GLU SER SEQRES 9 A 1368 PHE LEU VAL GLU GLU ASP LYS LYS HIS GLU ARG HIS PRO SEQRES 10 A 1368 ILE PHE GLY ASN ILE VAL ASP GLU VAL ALA TYR HIS GLU SEQRES 11 A 1368 LYS TYR PRO THR ILE TYR HIS LEU ARG LYS LYS LEU VAL SEQRES 12 A 1368 ASP SER THR ASP LYS ALA ASP LEU ARG LEU ILE TYR LEU SEQRES 13 A 1368 ALA LEU ALA HIS MET ILE LYS PHE ARG GLY HIS PHE LEU SEQRES 14 A 1368 ILE GLU GLY ASP LEU ASN PRO ASP ASN SER ASP VAL ASP SEQRES 15 A 1368 LYS LEU PHE ILE GLN LEU VAL GLN THR TYR ASN GLN LEU SEQRES 16 A 1368 PHE GLU GLU ASN PRO ILE ASN ALA SER GLY VAL ASP ALA SEQRES 17 A 1368 LYS ALA ILE LEU SER ALA ARG LEU SER LYS SER ARG ARG SEQRES 18 A 1368 LEU GLU ASN LEU ILE ALA GLN LEU PRO GLY GLU LYS LYS SEQRES 19 A 1368 ASN GLY LEU PHE GLY ASN LEU ILE ALA LEU SER LEU GLY SEQRES 20 A 1368 LEU THR PRO ASN PHE LYS SER ASN PHE ASP LEU ALA GLU SEQRES 21 A 1368 ASP THR LYS LEU GLN LEU SER LYS ASP THR TYR ASP ASP SEQRES 22 A 1368 ASP LEU ASP ASN LEU LEU ALA GLN ILE GLY ASP GLN TYR SEQRES 23 A 1368 ALA ASP LEU PHE LEU ALA ALA LYS ASN LEU SER ASP ALA SEQRES 24 A 1368 ILE LEU LEU SER ASP ILE LEU ARG VAL ASN THR GLU ILE SEQRES 25 A 1368 THR LYS ALA PRO LEU SER ALA SER MET ILE LYS LEU TYR SEQRES 26 A 1368 ASP GLU HIS HIS GLN ASP LEU THR LEU LEU LYS ALA LEU SEQRES 27 A 1368 VAL ARG GLN GLN LEU PRO GLU LYS TYR LYS GLU ILE PHE SEQRES 28 A 1368 PHE ASP GLN SER LYS ASN GLY TYR ALA GLY TYR ILE ASP SEQRES 29 A 1368 GLY GLY ALA SER GLN GLU GLU PHE TYR LYS PHE ILE LYS SEQRES 30 A 1368 PRO ILE LEU GLU LYS MET ASP GLY THR GLU GLU LEU LEU SEQRES 31 A 1368 VAL LYS LEU ASN ARG GLU ASP LEU LEU ARG LYS GLN ARG SEQRES 32 A 1368 THR PHE ASP ASN GLY ILE ILE THR HIS GLN ILE HIS LEU SEQRES 33 A 1368 GLY GLU LEU HIS ALA ILE LEU ARG ARG GLN GLU ASP PHE SEQRES 34 A 1368 TYR PRO PHE LEU LYS ASP ASN ARG GLU LYS ILE GLU LYS SEQRES 35 A 1368 ILE LEU THR PHE ARG ILE PRO TYR TYR VAL GLY PRO LEU SEQRES 36 A 1368 ALA ARG GLY ASN SER ARG PHE ALA TRP MET THR ARG LYS SEQRES 37 A 1368 SER GLU GLU THR ILE THR PRO TRP ASN PHE GLU LYS VAL SEQRES 38 A 1368 VAL ASP LYS GLY ALA SER ALA GLN SER PHE ILE GLU ARG SEQRES 39 A 1368 MET THR ASN PHE ASP LYS ASN LEU PRO ASN GLU LYS VAL SEQRES 40 A 1368 LEU PRO LYS HIS SER LEU LEU TYR GLU TYR PHE THR VAL SEQRES 41 A 1368 TYR ASN GLU LEU THR LYS VAL LYS TYR VAL THR GLU GLY SEQRES 42 A 1368 MET ARG LYS PRO ALA PHE LEU SER GLY ASP GLN LYS LYS SEQRES 43 A 1368 ALA ILE VAL ASP LEU LEU PHE LYS THR ASN ARG LYS VAL SEQRES 44 A 1368 THR VAL LYS GLN LEU LYS GLU ASP TYR PHE LYS LYS ILE SEQRES 45 A 1368 GLU CYS PHE ASP SER VAL GLU ILE SER GLY VAL GLU ASP SEQRES 46 A 1368 ARG PHE ASN ALA SER LEU GLY THR TYR HIS ASP LEU LEU SEQRES 47 A 1368 LYS ILE ILE LYS ASP LYS ASP PHE LEU ASP ASN GLU GLU SEQRES 48 A 1368 ASN GLU ASP ILE LEU GLU ASP ILE VAL LEU THR LEU THR SEQRES 49 A 1368 LEU PHE GLU ASP ARG GLU MET ILE GLU GLU ARG LEU LYS SEQRES 50 A 1368 THR TYR ALA HIS LEU PHE ASP ASP LYS VAL MET LYS GLN SEQRES 51 A 1368 LEU LYS ARG ARG ARG TYR THR GLY TRP GLY ARG LEU SER SEQRES 52 A 1368 ARG LYS LEU ILE ASN GLY ILE ARG ASP LYS GLN SER GLY SEQRES 53 A 1368 LYS THR ILE LEU ASP PHE LEU LYS SER ASP GLY PHE ALA SEQRES 54 A 1368 ASN ARG ASN PHE ILE GLN LEU ILE HIS ASP ASP SER LEU SEQRES 55 A 1368 THR PHE LYS GLU ASP ILE GLN LYS ALA GLN VAL SER GLY SEQRES 56 A 1368 GLN GLY ASP SER LEU HIS GLU HIS ILE ALA ASN LEU ALA SEQRES 57 A 1368 GLY SER PRO ALA ILE LYS LYS GLY ILE LEU GLN THR VAL SEQRES 58 A 1368 LYS VAL VAL ASP GLU LEU VAL LYS VAL MET GLY ARG HIS SEQRES 59 A 1368 LYS PRO GLU ASN ILE VAL ILE GLU MET ALA ARG GLU ASN SEQRES 60 A 1368 GLN THR THR GLN LYS GLY GLN LYS ASN SER ARG GLU ARG SEQRES 61 A 1368 MET LYS ARG ILE GLU GLU GLY ILE LYS GLU LEU GLY SER SEQRES 62 A 1368 GLN ILE LEU LYS GLU HIS PRO VAL GLU ASN THR GLN LEU SEQRES 63 A 1368 GLN ASN GLU LYS LEU TYR LEU TYR TYR LEU GLN ASN GLY SEQRES 64 A 1368 ARG ASP MET TYR VAL ASP GLN GLU LEU ASP ILE ASN ARG SEQRES 65 A 1368 LEU SER ASP TYR ASP VAL ASP HIS ILE VAL PRO GLN SER SEQRES 66 A 1368 PHE LEU LYS ASP ASP SER ILE ASP ASN LYS VAL LEU THR SEQRES 67 A 1368 ARG SER ASP LYS ASN ARG GLY LYS SER ASP ASN VAL PRO SEQRES 68 A 1368 SER GLU GLU VAL VAL LYS LYS MET LYS ASN TYR TRP ARG SEQRES 69 A 1368 GLN LEU LEU ASN ALA LYS LEU ILE THR GLN ARG LYS PHE SEQRES 70 A 1368 ASP ASN LEU THR LYS ALA GLU ARG GLY GLY LEU SER GLU SEQRES 71 A 1368 LEU ASP LYS ALA GLY PHE ILE LYS ARG GLN LEU VAL GLU SEQRES 72 A 1368 THR ARG GLN ILE THR LYS HIS VAL ALA GLN ILE LEU ASP SEQRES 73 A 1368 SER ARG MET ASN THR LYS TYR ASP GLU ASN ASP LYS LEU SEQRES 74 A 1368 ILE ARG GLU VAL LYS VAL ILE THR LEU LYS SER LYS LEU SEQRES 75 A 1368 VAL SER ASP PHE ARG LYS ASP PHE GLN PHE TYR LYS VAL SEQRES 76 A 1368 ARG GLU ILE ASN ASN TYR HIS HIS ALA HIS ASP ALA TYR SEQRES 77 A 1368 LEU ASN ALA VAL VAL GLY THR ALA LEU ILE LYS LYS TYR SEQRES 78 A 1368 PRO LYS LEU GLU SER GLU PHE VAL TYR GLY ASP TYR LYS SEQRES 79 A 1368 VAL TYR ASP VAL ARG LYS MET ILE ALA LYS SER GLU GLN SEQRES 80 A 1368 GLU ILE GLY LYS ALA THR ALA LYS TYR PHE PHE TYR SER SEQRES 81 A 1368 ASN ILE MET ASN PHE PHE LYS THR GLU ILE THR LEU ALA SEQRES 82 A 1368 ASN GLY GLU ILE ARG LYS ARG PRO LEU ILE GLU THR ASN SEQRES 83 A 1368 GLY GLU THR GLY GLU ILE VAL TRP ASP LYS GLY ARG ASP SEQRES 84 A 1368 PHE ALA THR VAL ARG LYS VAL LEU SER MET PRO GLN VAL SEQRES 85 A 1368 ASN ILE VAL LYS LYS THR GLU VAL GLN THR GLY GLY PHE SEQRES 86 A 1368 SER LYS GLU SER ILE LEU PRO LYS ARG ASN SER ASP LYS SEQRES 87 A 1368 LEU ILE ALA ARG LYS LYS ASP TRP ASP PRO LYS LYS TYR SEQRES 88 A 1368 GLY GLY PHE ASP SER PRO THR VAL ALA TYR SER VAL LEU SEQRES 89 A 1368 VAL VAL ALA LYS VAL GLU LYS GLY LYS SER LYS LYS LEU SEQRES 90 A 1368 LYS SER VAL LYS GLU LEU LEU GLY ILE THR ILE MET GLU SEQRES 91 A 1368 ARG SER SER PHE GLU LYS ASN PRO ILE ASP PHE LEU GLU SEQRES 92 A 1368 ALA LYS GLY TYR LYS GLU VAL LYS LYS ASP LEU ILE ILE SEQRES 93 A 1368 LYS LEU PRO LYS TYR SER LEU PHE GLU LEU GLU ASN GLY SEQRES 94 A 1368 ARG LYS ARG MET LEU ALA SER ALA GLY VAL LEU GLN LYS SEQRES 95 A 1368 GLY ASN GLU LEU ALA LEU PRO SER LYS TYR VAL ASN PHE SEQRES 96 A 1368 LEU TYR LEU ALA SER HIS TYR GLU LYS LEU LYS GLY SER SEQRES 97 A 1368 PRO GLU ASP ASN GLU GLN LYS GLN LEU PHE VAL GLU GLN SEQRES 98 A 1368 HIS LYS HIS TYR LEU ASP GLU ILE ILE GLU GLN ILE SER SEQRES 99 A 1368 GLU PHE SER LYS ARG VAL ILE LEU ALA ASP ALA ASN LEU SEQRES 100 A 1368 ASP LYS VAL LEU SER ALA TYR ASN LYS HIS ARG ASP LYS SEQRES 101 A 1368 PRO ILE ARG GLU GLN ALA GLU ASN ILE ILE HIS LEU PHE SEQRES 102 A 1368 THR LEU THR ASN LEU GLY ALA PRO ALA ALA PHE LYS TYR SEQRES 103 A 1368 PHE ASP THR THR ILE ASP ARG LYS ARG TYR THR SER THR SEQRES 104 A 1368 LYS GLU VAL LEU ASP ALA THR LEU ILE HIS GLN SER ILE SEQRES 105 A 1368 THR GLY LEU TYR GLU THR ARG ILE ASP LEU SER GLN LEU SEQRES 106 A 1368 GLY GLY ASP FORMUL 2 HOH *92(H2 O) HELIX 1 AA1 THR A 42 LYS A 46 5 5 HELIX 2 AA2 THR A 78 LEU A 84 1 7 HELIX 3 AA3 THR A 87 ASP A 114 1 28 HELIX 4 AA4 SER A 116 PHE A 125 1 10 HELIX 5 AA5 ASN A 141 TYR A 152 1 12 HELIX 6 AA6 THR A 154 ASP A 164 1 11 HELIX 7 AA7 ASP A 170 ARG A 185 1 16 HELIX 8 AA8 ASN A 195 SER A 199 5 5 HELIX 9 AA9 ASP A 200 PHE A 216 1 17 HELIX 10 AB1 ASP A 227 SER A 233 1 7 HELIX 11 AB2 SER A 237 ALA A 247 1 11 HELIX 12 AB3 GLY A 256 GLY A 267 1 12 HELIX 13 AB4 THR A 290 GLY A 303 1 14 HELIX 14 AB5 TYR A 306 ARG A 327 1 22 HELIX 15 AB6 ALA A 335 LEU A 363 1 29 HELIX 16 AB7 LYS A 366 ASP A 373 1 8 HELIX 17 AB8 GLY A 378 GLY A 385 1 8 HELIX 18 AB9 SER A 388 LYS A 402 1 15 HELIX 19 AC1 THR A 406 ARG A 415 1 10 HELIX 20 AC2 GLY A 428 GLU A 447 1 20 HELIX 21 AC3 TYR A 450 ASN A 456 1 7 HELIX 22 AC4 ASN A 456 PHE A 466 1 11 HELIX 23 AC5 VAL A 472 ALA A 476 5 5 HELIX 24 AC6 SER A 532 THR A 545 1 14 HELIX 25 AC7 SER A 561 LEU A 572 1 12 HELIX 26 AC8 THR A 580 GLU A 586 1 7 HELIX 27 AC9 LEU A 611 LYS A 622 1 12 HELIX 28 AD1 ASP A 623 ASN A 629 1 7 HELIX 29 AD2 ASN A 632 PHE A 646 1 15 HELIX 30 AD3 ASP A 648 LYS A 657 1 10 HELIX 31 AD4 THR A 658 ALA A 660 5 3 HELIX 32 AD5 ASP A 664 LYS A 672 1 9 HELIX 33 AD6 SER A 683 GLY A 689 1 7 HELIX 34 AD7 THR A 698 SER A 705 1 8 HELIX 35 AD8 ASN A 712 ASP A 719 1 8 HELIX 36 AD9 THR A 723 GLY A 735 1 13 HELIX 37 AE1 SER A 739 ASN A 746 1 8 HELIX 38 AE2 SER A 750 MET A 771 1 22 HELIX 39 AE3 THR A 789 GLY A 812 1 24 HELIX 40 AE4 GLN A 814 HIS A 819 1 6 HELIX 41 AE5 GLU A 822 GLN A 827 5 6 HELIX 42 AE6 ASN A 828 GLN A 837 1 10 HELIX 43 AE7 ASP A 849 TYR A 856 5 8 HELIX 44 AE8 SER A 871 ASP A 873 5 3 HELIX 45 AE9 SER A 880 GLY A 885 5 6 HELIX 46 AF1 SER A 892 ALA A 909 1 18 HELIX 47 AF2 THR A 913 THR A 921 1 9 HELIX 48 AF3 LYS A 922 GLY A 926 5 5 HELIX 49 AF4 SER A 929 VAL A 942 1 14 HELIX 50 AF5 ARG A 945 ASN A 960 1 16 HELIX 51 AF6 LYS A 979 PHE A 990 1 12 HELIX 52 AF7 ASN A 1000 TYR A 1021 1 22 HELIX 53 AF8 PRO A 1022 PHE A 1028 5 7 HELIX 54 AF9 ASP A 1037 ILE A 1042 5 6 HELIX 55 AG1 GLU A 1046 GLY A 1050 5 5 HELIX 56 AG2 ASN A 1061 LYS A 1067 5 7 HELIX 57 AG3 ARG A 1098 MET A 1109 1 12 HELIX 58 AG4 ILE A 1188 ASN A 1197 1 10 HELIX 59 AG5 ASN A 1197 ALA A 1204 1 8 HELIX 60 AG6 LYS A 1211 ILE A 1215 5 5 HELIX 61 AG7 GLU A 1227 GLY A 1229 5 3 HELIX 62 AG8 PRO A 1249 HIS A 1261 1 13 HELIX 63 AG9 SER A 1268 HIS A 1282 1 15 HELIX 64 AH1 HIS A 1284 ILE A 1301 1 18 HELIX 65 AH2 ALA A 1303 HIS A 1317 1 15 HELIX 66 AH3 PRO A 1321 ASN A 1337 1 17 HELIX 67 AH4 THR A 1359 ASP A 1364 5 6 HELIX 68 AH5 SER A 1383 LEU A 1385 5 3 SHEET 1 AA1 6 LYS A 974 THR A 977 0 SHEET 2 AA1 6 ASN A 778 MET A 783 1 N ILE A 781 O ILE A 976 SHEET 3 AA1 6 SER A 26 ILE A 31 1 N LEU A 29 O VAL A 780 SHEET 4 AA1 6 SER A 35 ILE A 41 -1 O ALA A 39 N GLY A 28 SHEET 5 AA1 6 ILE A 68 LEU A 72 -1 O LEU A 71 N VAL A 36 SHEET 6 AA1 6 ASN A1113 LYS A1116 1 O VAL A1115 N LEU A 72 SHEET 1 AA2 2 SER A 49 LYS A 53 0 SHEET 2 AA2 2 SER A 62 ASN A 66 -1 O ILE A 63 N PHE A 52 SHEET 1 AA3 6 LEU A 55 GLY A 56 0 SHEET 2 AA3 6 GLU A1377 ASP A1381 1 O ARG A1379 N LEU A 55 SHEET 3 AA3 6 THR A1366 GLN A1370 -1 N LEU A1367 O ILE A1380 SHEET 4 AA3 6 SER A1222 GLU A1225 -1 N LEU A1223 O ILE A1368 SHEET 5 AA3 6 LYS A1231 LEU A1234 -1 O ARG A1232 N PHE A1224 SHEET 6 AA3 6 LEU A1240 LYS A1242 -1 O GLN A1241 N MET A1233 SHEET 1 AA4 3 ALA A 558 PHE A 559 0 SHEET 2 AA4 3 LYS A 548 THR A 551 -1 N TYR A 549 O ALA A 558 SHEET 3 AA4 3 VAL A 598 SER A 601 -1 O SER A 601 N LYS A 548 SHEET 1 AA5 2 ASP A 857 HIS A 860 0 SHEET 2 AA5 2 LYS A 875 THR A 878 -1 O VAL A 876 N ASP A 859 SHEET 1 AA6 2 GLU A1069 THR A1071 0 SHEET 2 AA6 2 ILE A1077 LYS A1079 -1 O ARG A1078 N ILE A1070 SHEET 1 AA7 2 ILE A1083 THR A1085 0 SHEET 2 AA7 2 ILE A1092 ASP A1095 -1 O TRP A1094 N GLU A1084 SHEET 1 AA8 3 SER A1179 THR A1187 0 SHEET 2 AA8 3 VAL A1159 LYS A1168 -1 N VAL A1163 O LEU A1184 SHEET 3 AA8 3 ILE A1216 LEU A1218 -1 O LEU A1218 N SER A1162 SHEET 1 AA9 2 PHE A1344 TYR A1346 0 SHEET 2 AA9 2 THR A1349 ILE A1351 -1 O ILE A1351 N PHE A1344 CRYST1 190.023 190.023 142.985 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005263 0.003038 0.000000 0.00000 SCALE2 0.000000 0.006077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006994 0.00000