HEADER OXIDOREDUCTASE 29-SEP-21 7VKD TITLE REDUCED ENZYME OF FAD-DPENDENT GLUCOSE DEHYDROGENASE AT PH6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMC OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; SOURCE 3 ORGANISM_COMMON: YELLOW KOJI MOLD; SOURCE 4 ORGANISM_TAXID: 5062; SOURCE 5 GENE: OAORY_01010120; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLUCOSE DEHYDROGENASE, REDUCED ENZYME, FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKAJIMA,Y.NISHIYA,K.ITO REVDAT 2 12-OCT-22 7VKD 1 AUTHOR REVDAT 1 05-OCT-22 7VKD 0 JRNL AUTH Y.NAKAJIMA JRNL TITL CONFORMATIONAL CHANGE OF CATALYTIC RESIDUE IN REDUCED ENZYME JRNL TITL 2 OF FAD-DEPENDENT GLUCOSE DEHYDROGENASE AT PH6.5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 72749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3739 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1470 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.1820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.154 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4482 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6121 ; 1.664 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 573 ; 6.495 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;36.812 ;24.670 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;11.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3437 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2262 ; 1.015 ; 1.314 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2827 ; 1.579 ; 1.971 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2220 ; 1.839 ; 1.471 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7766 ; 4.737 ;12.601 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 7VKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.15800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NA TARTRATE, BIS-TRIS REMARK 280 PROPANE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.93350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.04500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.96675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.04500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.90025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.04500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.96675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.04500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.90025 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.93350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 ALA A 246 REMARK 465 SER A 571 REMARK 465 ALA A 572 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 243 CG OD1 ND2 REMARK 470 LYS A 570 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1292 O HOH A 1292 7555 2.05 REMARK 500 O HOH A 1219 O HOH A 1219 8554 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 523 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 -123.12 -112.21 REMARK 500 ARG A 100 -116.32 -102.86 REMARK 500 LYS A 270 -74.15 -112.01 REMARK 500 ARG A 280 -40.43 -133.22 REMARK 500 ALA A 511 59.98 -142.48 REMARK 500 ASN A 533 28.88 -150.79 REMARK 500 ASP A 538 -172.12 -176.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1320 DISTANCE = 5.94 ANGSTROMS DBREF1 7VKD A 2 572 UNP A0A1S9DW10_ASPOZ DBREF2 7VKD A A0A1S9DW10 23 593 SEQADV 7VKD MET A 1 UNP A0A1S9DW1 INITIATING METHIONINE SEQRES 1 A 572 MET LYS ASN THR THR THR TYR ASP TYR ILE VAL VAL GLY SEQRES 2 A 572 GLY GLY THR SER GLY LEU VAL VAL ALA ASN ARG LEU SER SEQRES 3 A 572 GLU ASN PRO ASP VAL SER VAL LEU LEU LEU GLU ALA GLY SEQRES 4 A 572 ALA SER VAL PHE ASN ASN PRO ASP VAL THR ASN ALA ASN SEQRES 5 A 572 GLY TYR GLY LEU ALA PHE GLY SER ALA ILE ASP TRP GLN SEQRES 6 A 572 TYR GLN SER ILE ASN GLN SER TYR ALA GLY GLY LYS GLN SEQRES 7 A 572 GLN VAL LEU ARG ALA GLY LYS ALA LEU GLY GLY THR SER SEQRES 8 A 572 THR ILE ASN GLY MET ALA TYR THR ARG ALA GLU ASP VAL SEQRES 9 A 572 GLN ILE ASP VAL TRP GLN LYS LEU GLY ASN GLU GLY TRP SEQRES 10 A 572 THR TRP LYS ASP LEU LEU PRO TYR TYR LEU LYS SER GLU SEQRES 11 A 572 ASN LEU THR ALA PRO THR SER SER GLN VAL ALA ALA GLY SEQRES 12 A 572 ALA ALA TYR ASN PRO ALA VAL ASN GLY LYS GLU GLY PRO SEQRES 13 A 572 LEU LYS VAL GLY TRP SER GLY SER LEU ALA SER GLY ASN SEQRES 14 A 572 LEU SER VAL ALA LEU ASN ARG THR PHE GLN ALA ALA GLY SEQRES 15 A 572 VAL PRO TRP VAL GLU ASP VAL ASN GLY GLY LYS MET ARG SEQRES 16 A 572 GLY PHE ASN ILE TYR PRO SER THR LEU ASP VAL ASP LEU SEQRES 17 A 572 ASN VAL ARG GLU ASP ALA ALA ARG ALA TYR TYR PHE PRO SEQRES 18 A 572 TYR ASP ASP ARG LYS ASN LEU HIS LEU LEU GLU ASN THR SEQRES 19 A 572 THR ALA ASN ARG LEU PHE TRP LYS ASN GLY SER ALA GLU SEQRES 20 A 572 GLU ALA ILE ALA ASP GLY VAL GLU ILE THR SER ALA ASP SEQRES 21 A 572 GLY LYS VAL THR ARG VAL HIS ALA LYS LYS GLU VAL ILE SEQRES 22 A 572 ILE SER ALA GLY ALA LEU ARG SER PRO LEU ILE LEU GLU SEQRES 23 A 572 LEU SER GLY VAL GLY ASN PRO THR ILE LEU LYS LYS ASN SEQRES 24 A 572 ASN ILE THR PRO ARG VAL ASP LEU PRO THR VAL GLY GLU SEQRES 25 A 572 ASN LEU GLN ASP GLN PHE ASN ASN GLY MET ALA GLY GLU SEQRES 26 A 572 GLY TYR GLY VAL LEU ALA GLY ALA SER THR VAL THR TYR SEQRES 27 A 572 PRO SER ILE SER ASP VAL PHE GLY ASN GLU THR ASP SER SEQRES 28 A 572 ILE VAL ALA SER LEU ARG SER GLN LEU SER ASP TYR ALA SEQRES 29 A 572 ALA ALA THR VAL LYS VAL SER ASN GLY HIS MET LYS GLN SEQRES 30 A 572 GLU ASP LEU GLU ARG LEU TYR GLN LEU GLN PHE ASP LEU SEQRES 31 A 572 ILE VAL LYS ASP LYS VAL PRO ILE ALA GLU ILE LEU PHE SEQRES 32 A 572 HIS PRO GLY GLY GLY ASN ALA VAL SER SER GLU PHE TRP SEQRES 33 A 572 GLY LEU LEU PRO PHE ALA ARG GLY ASN ILE HIS ILE SER SEQRES 34 A 572 SER ASN ASP PRO THR ALA PRO ALA ALA ILE ASN PRO ASN SEQRES 35 A 572 TYR PHE MET PHE GLU TRP ASP GLY LYS SER GLN ALA GLY SEQRES 36 A 572 ILE ALA LYS TYR ILE ARG LYS ILE LEU ARG SER ALA PRO SEQRES 37 A 572 LEU ASN LYS LEU ILE ALA LYS GLU THR LYS PRO GLY LEU SEQRES 38 A 572 SER GLU ILE PRO ALA THR ALA ALA ASP GLU LYS TRP VAL SEQRES 39 A 572 GLU TRP LEU LYS ALA ASN TYR ARG SER ASN PHE HIS PRO SEQRES 40 A 572 VAL GLY THR ALA ALA MET MET PRO ARG SER ILE GLY GLY SEQRES 41 A 572 VAL VAL ASP ASN ARG LEU ARG VAL TYR GLY THR SER ASN SEQRES 42 A 572 VAL ARG VAL VAL ASP ALA SER VAL LEU PRO PHE GLN VAL SEQRES 43 A 572 CYS GLY HIS LEU VAL SER THR LEU TYR ALA VAL ALA GLU SEQRES 44 A 572 ARG ALA SER ASP LEU ILE LYS GLU ASP ALA LYS SER ALA HET FDA A 600 53 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 HOH *620(H2 O) HELIX 1 AA1 SER A 17 SER A 26 1 10 HELIX 2 AA2 ASN A 45 ASN A 50 1 6 HELIX 3 AA3 GLY A 88 ILE A 93 5 6 HELIX 4 AA4 GLU A 102 LEU A 112 1 11 HELIX 5 AA5 THR A 118 SER A 129 1 12 HELIX 6 AA6 THR A 136 ALA A 142 1 7 HELIX 7 AA7 ASN A 147 ASN A 151 5 5 HELIX 8 AA8 GLY A 168 ALA A 181 1 14 HELIX 9 AA9 ASP A 213 TYR A 219 1 7 HELIX 10 AB1 PHE A 220 ASP A 223 5 4 HELIX 11 AB2 ARG A 280 SER A 288 1 9 HELIX 12 AB3 ASN A 292 ASN A 299 1 8 HELIX 13 AB4 SER A 340 GLY A 346 1 7 HELIX 14 AB5 GLU A 348 SER A 371 1 24 HELIX 15 AB6 LYS A 376 LYS A 393 1 18 HELIX 16 AB7 PHE A 446 ARG A 465 1 20 HELIX 17 AB8 PRO A 468 LYS A 471 5 4 HELIX 18 AB9 ALA A 489 TYR A 501 1 13 HELIX 19 AC1 PRO A 515 GLY A 519 5 5 HELIX 20 AC2 ASP A 538 LEU A 542 5 5 HELIX 21 AC3 HIS A 549 LYS A 570 1 22 SHEET 1 AA1 6 LEU A 228 LEU A 231 0 SHEET 2 AA1 6 VAL A 33 LEU A 36 1 N VAL A 33 O HIS A 229 SHEET 3 AA1 6 THR A 6 VAL A 12 1 N VAL A 11 O LEU A 34 SHEET 4 AA1 6 VAL A 263 ILE A 274 1 O ILE A 273 N VAL A 12 SHEET 5 AA1 6 ALA A 251 THR A 257 -1 N ILE A 256 O THR A 264 SHEET 6 AA1 6 THR A 235 TRP A 241 -1 N ASN A 237 O GLU A 255 SHEET 1 AA2 5 LEU A 228 LEU A 231 0 SHEET 2 AA2 5 VAL A 33 LEU A 36 1 N VAL A 33 O HIS A 229 SHEET 3 AA2 5 THR A 6 VAL A 12 1 N VAL A 11 O LEU A 34 SHEET 4 AA2 5 VAL A 263 ILE A 274 1 O ILE A 273 N VAL A 12 SHEET 5 AA2 5 VAL A 534 VAL A 536 1 O ARG A 535 N ILE A 274 SHEET 1 AA3 2 TYR A 66 GLN A 67 0 SHEET 2 AA3 2 VAL A 80 LEU A 81 -1 O LEU A 81 N TYR A 66 SHEET 1 AA4 2 GLU A 130 LEU A 132 0 SHEET 2 AA4 2 LEU A 157 VAL A 159 1 O LEU A 157 N ASN A 131 SHEET 1 AA5 6 GLY A 196 ASN A 198 0 SHEET 2 AA5 6 THR A 335 TYR A 338 -1 O TYR A 338 N GLY A 196 SHEET 3 AA5 6 ALA A 399 GLY A 407 -1 O PHE A 403 N THR A 335 SHEET 4 AA5 6 ALA A 410 GLY A 417 -1 O GLU A 414 N LEU A 402 SHEET 5 AA5 6 PHE A 318 GLY A 326 -1 N MET A 322 O SER A 413 SHEET 6 AA5 6 ILE A 473 LYS A 478 -1 O THR A 477 N ALA A 323 SHEET 1 AA6 6 GLY A 196 ASN A 198 0 SHEET 2 AA6 6 THR A 335 TYR A 338 -1 O TYR A 338 N GLY A 196 SHEET 3 AA6 6 ALA A 399 GLY A 407 -1 O PHE A 403 N THR A 335 SHEET 4 AA6 6 ALA A 410 GLY A 417 -1 O GLU A 414 N LEU A 402 SHEET 5 AA6 6 PHE A 318 GLY A 326 -1 N MET A 322 O SER A 413 SHEET 6 AA6 6 ARG A 502 SER A 503 -1 O ARG A 502 N ASN A 319 SHEET 1 AA7 2 LEU A 204 ASP A 205 0 SHEET 2 AA7 2 VAL A 210 ARG A 211 -1 O VAL A 210 N ASP A 205 SHEET 1 AA8 2 VAL A 290 GLY A 291 0 SHEET 2 AA8 2 VAL A 305 ASP A 306 1 O VAL A 305 N GLY A 291 SHEET 1 AA9 3 GLU A 312 LEU A 314 0 SHEET 2 AA9 3 GLY A 424 HIS A 427 -1 O GLY A 424 N LEU A 314 SHEET 3 AA9 3 ALA A 438 ASN A 440 -1 O ASN A 440 N ASN A 425 CISPEP 1 ALA A 467 PRO A 468 0 1.36 CISPEP 2 LYS A 478 PRO A 479 0 -2.46 CRYST1 94.090 94.090 123.867 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010628 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008073 0.00000