HEADER TRANSFERASE 02-OCT-21 7VLB TITLE CRYSTAL STRUCTURE OF UGT109A1 FROM BACILLUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SPIZIZENII; SOURCE 3 ORGANISM_TAXID: 96241; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS GLYCOSYL TRANSFERASE, UGT109A1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.Q.CHEN,Y.ZHANG REVDAT 2 29-NOV-23 7VLB 1 REMARK REVDAT 1 05-OCT-22 7VLB 0 JRNL AUTH L.Q.CHEN,Y.ZHANG JRNL TITL CRYSTAL STRUCTURE OF UGT109A1 FROM BACILLUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.845 REMARK 3 FREE R VALUE TEST SET COUNT : 1297 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.46400 REMARK 3 B22 (A**2) : 1.46400 REMARK 3 B33 (A**2) : -2.92900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.403 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5937 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5682 ; 0.035 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8032 ; 1.728 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13156 ; 2.329 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 734 ; 7.968 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;39.237 ;24.618 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1075 ;19.871 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.538 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 777 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6655 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1239 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1460 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 22 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2831 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 152 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2948 ; 6.386 ; 9.146 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2947 ; 6.385 ; 9.144 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3678 ; 9.829 ;13.711 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3679 ; 9.828 ;13.714 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2988 ; 6.350 ; 9.505 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2987 ; 6.349 ; 9.506 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4354 ; 9.743 ;14.038 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4355 ; 9.742 ;14.037 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7VLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26821 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1IIR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.86500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 68.93700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 68.93700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.79750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 68.93700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 68.93700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.93250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 68.93700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.93700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.79750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 68.93700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.93700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.93250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ALA A 389 REMARK 465 VAL A 390 REMARK 465 PRO A 391 REMARK 465 GLN A 392 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 SER B 59 REMARK 465 LEU B 60 REMARK 465 ASN B 61 REMARK 465 ILE B 62 REMARK 465 ASP B 63 REMARK 465 PRO B 64 REMARK 465 LYS B 65 REMARK 465 GLN B 66 REMARK 465 ILE B 67 REMARK 465 ARG B 68 REMARK 465 GLU B 69 REMARK 465 MET B 70 REMARK 465 MET B 71 REMARK 465 GLU B 72 REMARK 465 LYS B 73 REMARK 465 ASN B 74 REMARK 465 ASP B 75 REMARK 465 ALA B 76 REMARK 465 THR B 77 REMARK 465 LEU B 78 REMARK 465 SER B 79 REMARK 465 TYR B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 GLN B 160 REMARK 465 GLU B 161 REMARK 465 GLN B 162 REMARK 465 LEU B 163 REMARK 465 PRO B 164 REMARK 465 ALA B 165 REMARK 465 VAL B 166 REMARK 465 SER B 167 REMARK 465 ALA B 389 REMARK 465 VAL B 390 REMARK 465 PRO B 391 REMARK 465 GLN B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 57 CB - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 LEU B 110 N - CA - C ANGL. DEV. = -35.6 DEGREES REMARK 500 ALA B 111 N - CA - CB ANGL. DEV. = 28.1 DEGREES REMARK 500 ALA B 111 N - CA - C ANGL. DEV. = -30.1 DEGREES REMARK 500 LYS B 113 CB - CA - C ANGL. DEV. = -26.1 DEGREES REMARK 500 LYS B 113 N - CA - C ANGL. DEV. = -22.1 DEGREES REMARK 500 LEU B 114 N - CA - CB ANGL. DEV. = 26.1 DEGREES REMARK 500 LEU B 114 N - CA - C ANGL. DEV. = -27.8 DEGREES REMARK 500 ASP B 367 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 45.55 70.05 REMARK 500 SER A 129 -165.13 -115.69 REMARK 500 ASN A 140 -179.66 -69.39 REMARK 500 GLN A 160 -52.48 -128.36 REMARK 500 GLU A 161 -162.48 -121.28 REMARK 500 ALA A 165 -152.14 -166.82 REMARK 500 PHE A 181 32.92 -97.66 REMARK 500 ASP A 194 -156.94 -82.23 REMARK 500 SER A 203 69.60 -114.05 REMARK 500 THR A 208 128.35 -26.76 REMARK 500 GLU A 211 157.09 -46.12 REMARK 500 SER A 212 94.62 -62.90 REMARK 500 LEU A 213 72.83 -113.21 REMARK 500 ILE A 215 67.52 -157.31 REMARK 500 LYS A 217 -133.65 54.28 REMARK 500 ALA A 230 -46.30 -141.36 REMARK 500 PHE A 231 50.59 -109.76 REMARK 500 ASP A 247 16.35 55.76 REMARK 500 PRO A 269 154.45 -47.67 REMARK 500 ALA A 371 176.49 -59.74 REMARK 500 PRO B 12 59.03 -101.61 REMARK 500 VAL B 17 -56.71 -153.63 REMARK 500 ASP B 98 38.17 -154.81 REMARK 500 ALA B 111 -69.44 142.85 REMARK 500 LEU B 114 -82.98 140.26 REMARK 500 ASP B 117 3.50 -66.43 REMARK 500 SER B 129 -133.77 -103.06 REMARK 500 GLU B 169 151.06 -45.46 REMARK 500 LEU B 171 -65.27 -125.33 REMARK 500 GLU B 175 -179.38 -68.25 REMARK 500 PHE B 181 39.05 -95.89 REMARK 500 SER B 203 79.13 -109.79 REMARK 500 GLU B 209 133.65 -37.82 REMARK 500 GLU B 211 131.52 -36.74 REMARK 500 ALA B 233 65.22 -110.51 REMARK 500 GLN B 355 -81.91 56.45 REMARK 500 LYS B 386 59.71 -65.20 REMARK 500 LYS B 387 52.56 -158.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 272 THR A 273 149.85 REMARK 500 GLY A 353 ASP A 354 147.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 515 DISTANCE = 7.64 ANGSTROMS DBREF1 7VLB A 1 392 UNP A0A289QH46_BACPN DBREF2 7VLB A A0A289QH46 1 392 DBREF1 7VLB B 1 392 UNP A0A289QH46_BACPN DBREF2 7VLB B A0A289QH46 1 392 SEQRES 1 A 392 MET LYS LYS HIS HIS ILE SER MET ILE ASN ILE PRO ALA SEQRES 2 A 392 TYR GLY HIS VAL ASN PRO THR LEU ALA LEU VAL GLU LYS SEQRES 3 A 392 LEU CYS GLU LYS GLY HIS ARG VAL THR TYR ALA THR THR SEQRES 4 A 392 GLU GLU PHE ALA PRO ALA VAL GLN GLN ALA GLY GLY GLU SEQRES 5 A 392 ALA LEU ILE TYR HIS THR SER LEU ASN ILE ASP PRO LYS SEQRES 6 A 392 GLN ILE ARG GLU MET MET GLU LYS ASN ASP ALA THR LEU SEQRES 7 A 392 SER LEU LEU LYS GLU SER LEU SER ILE LEU PRO GLN LEU SEQRES 8 A 392 GLU GLU LEU TYR LYS ASP ASP GLN PRO ASP LEU ILE ILE SEQRES 9 A 392 TYR ASP PHE VAL ALA LEU ALA GLY LYS LEU PHE ALA ASP SEQRES 10 A 392 LYS LEU ASN VAL PRO VAL ILE LYS LEU CYS SER SER TYR SEQRES 11 A 392 ALA GLN ASN GLU SER PHE GLN LEU GLY ASN GLU ASP MET SEQRES 12 A 392 LEU LYS LYS ILE LYS GLU ALA GLU ALA GLU PHE LYS ALA SEQRES 13 A 392 TYR LEU GLU GLN GLU GLN LEU PRO ALA VAL SER PHE GLU SEQRES 14 A 392 GLN LEU ALA VAL PRO GLU ALA LEU ASN ILE VAL PHE MET SEQRES 15 A 392 PRO LYS SER PHE GLN ILE GLN HIS GLU THR PHE ASP ASP SEQRES 16 A 392 ARG PHE CYS PHE VAL GLY PRO SER LEU GLY LYS ARG THR SEQRES 17 A 392 GLU GLN GLU SER LEU LEU ILE ASP LYS GLY ASP ARG PRO SEQRES 18 A 392 LEU MET LEU ILE SER LEU GLY THR ALA PHE ASN ALA TRP SEQRES 19 A 392 PRO GLU PHE TYR LYS MET CYS ILE ASP ALA PHE ARG ASP SEQRES 20 A 392 SER SER TRP GLN VAL ILE MET SER VAL GLY LYS SER ILE SEQRES 21 A 392 ASP PRO GLU SER LEU ASP ASP THR PRO ALA ASN PHE THR SEQRES 22 A 392 ILE ARG GLN SER VAL PRO GLN LEU GLU VAL LEU ALA LYS SEQRES 23 A 392 ALA ASP LEU PHE ILE SER HIS GLY GLY MET ASN SER THR SEQRES 24 A 392 MET GLU ALA MET ASN ALA GLY VAL PRO LEU VAL VAL ILE SEQRES 25 A 392 PRO GLN MET TYR GLU GLN GLU LEU THR ALA LYS ARG VAL SEQRES 26 A 392 ASP GLU LEU GLY LEU GLY VAL TYR LEU GLN ARG GLU GLU SEQRES 27 A 392 VAL THR VAL SER LYS LEU GLN GLU ALA VAL GLN ALA VAL SEQRES 28 A 392 SER GLY ASP GLN GLU LEU LEU SER ARG VAL LYS SER MET SEQRES 29 A 392 GLN LYS ASP VAL LYS GLU ALA GLY GLY ALA GLU ARG ALA SEQRES 30 A 392 ALA ALA GLU ILE GLU ALA PHE MET LYS LYS SER ALA VAL SEQRES 31 A 392 PRO GLN SEQRES 1 B 392 MET LYS LYS HIS HIS ILE SER MET ILE ASN ILE PRO ALA SEQRES 2 B 392 TYR GLY HIS VAL ASN PRO THR LEU ALA LEU VAL GLU LYS SEQRES 3 B 392 LEU CYS GLU LYS GLY HIS ARG VAL THR TYR ALA THR THR SEQRES 4 B 392 GLU GLU PHE ALA PRO ALA VAL GLN GLN ALA GLY GLY GLU SEQRES 5 B 392 ALA LEU ILE TYR HIS THR SER LEU ASN ILE ASP PRO LYS SEQRES 6 B 392 GLN ILE ARG GLU MET MET GLU LYS ASN ASP ALA THR LEU SEQRES 7 B 392 SER LEU LEU LYS GLU SER LEU SER ILE LEU PRO GLN LEU SEQRES 8 B 392 GLU GLU LEU TYR LYS ASP ASP GLN PRO ASP LEU ILE ILE SEQRES 9 B 392 TYR ASP PHE VAL ALA LEU ALA GLY LYS LEU PHE ALA ASP SEQRES 10 B 392 LYS LEU ASN VAL PRO VAL ILE LYS LEU CYS SER SER TYR SEQRES 11 B 392 ALA GLN ASN GLU SER PHE GLN LEU GLY ASN GLU ASP MET SEQRES 12 B 392 LEU LYS LYS ILE LYS GLU ALA GLU ALA GLU PHE LYS ALA SEQRES 13 B 392 TYR LEU GLU GLN GLU GLN LEU PRO ALA VAL SER PHE GLU SEQRES 14 B 392 GLN LEU ALA VAL PRO GLU ALA LEU ASN ILE VAL PHE MET SEQRES 15 B 392 PRO LYS SER PHE GLN ILE GLN HIS GLU THR PHE ASP ASP SEQRES 16 B 392 ARG PHE CYS PHE VAL GLY PRO SER LEU GLY LYS ARG THR SEQRES 17 B 392 GLU GLN GLU SER LEU LEU ILE ASP LYS GLY ASP ARG PRO SEQRES 18 B 392 LEU MET LEU ILE SER LEU GLY THR ALA PHE ASN ALA TRP SEQRES 19 B 392 PRO GLU PHE TYR LYS MET CYS ILE ASP ALA PHE ARG ASP SEQRES 20 B 392 SER SER TRP GLN VAL ILE MET SER VAL GLY LYS SER ILE SEQRES 21 B 392 ASP PRO GLU SER LEU ASP ASP THR PRO ALA ASN PHE THR SEQRES 22 B 392 ILE ARG GLN SER VAL PRO GLN LEU GLU VAL LEU ALA LYS SEQRES 23 B 392 ALA ASP LEU PHE ILE SER HIS GLY GLY MET ASN SER THR SEQRES 24 B 392 MET GLU ALA MET ASN ALA GLY VAL PRO LEU VAL VAL ILE SEQRES 25 B 392 PRO GLN MET TYR GLU GLN GLU LEU THR ALA LYS ARG VAL SEQRES 26 B 392 ASP GLU LEU GLY LEU GLY VAL TYR LEU GLN ARG GLU GLU SEQRES 27 B 392 VAL THR VAL SER LYS LEU GLN GLU ALA VAL GLN ALA VAL SEQRES 28 B 392 SER GLY ASP GLN GLU LEU LEU SER ARG VAL LYS SER MET SEQRES 29 B 392 GLN LYS ASP VAL LYS GLU ALA GLY GLY ALA GLU ARG ALA SEQRES 30 B 392 ALA ALA GLU ILE GLU ALA PHE MET LYS LYS SER ALA VAL SEQRES 31 B 392 PRO GLN HET UDP A 401 36 HET UDP B 401 36 HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 3 UDP 2(C9 H14 N2 O12 P2) FORMUL 5 HOH *22(H2 O) HELIX 1 AA1 ALA A 13 LYS A 30 1 18 HELIX 2 AA2 THR A 39 GLU A 41 5 3 HELIX 3 AA3 PHE A 42 GLY A 50 1 9 HELIX 4 AA4 ASP A 63 GLU A 69 1 7 HELIX 5 AA5 THR A 77 LYS A 96 1 20 HELIX 6 AA6 ALA A 109 LEU A 119 1 11 HELIX 7 AA7 GLU A 149 LYS A 155 1 7 HELIX 8 AA8 GLN A 189 PHE A 193 5 5 HELIX 9 AA9 TRP A 234 ARG A 246 1 13 HELIX 10 AB1 PRO A 279 ALA A 285 1 7 HELIX 11 AB2 GLY A 295 ASN A 304 1 10 HELIX 12 AB3 MET A 315 LEU A 328 1 14 HELIX 13 AB4 THR A 340 SER A 352 1 13 HELIX 14 AB5 ASP A 354 ALA A 371 1 18 HELIX 15 AB6 GLY A 373 SER A 388 1 16 HELIX 16 AB7 PRO B 19 GLU B 29 1 11 HELIX 17 AB8 THR B 39 GLU B 41 5 3 HELIX 18 AB9 PHE B 42 GLY B 50 1 9 HELIX 19 AC1 LYS B 82 LYS B 96 1 15 HELIX 20 AC2 GLY B 112 ALA B 116 1 5 HELIX 21 AC3 ASP B 117 LEU B 119 5 3 HELIX 22 AC4 PRO B 183 GLN B 187 5 5 HELIX 23 AC5 GLN B 189 PHE B 193 5 5 HELIX 24 AC6 TRP B 234 ARG B 246 1 13 HELIX 25 AC7 ASP B 261 LEU B 265 5 5 HELIX 26 AC8 PRO B 279 ALA B 285 1 7 HELIX 27 AC9 GLY B 295 ALA B 305 1 11 HELIX 28 AD1 MET B 315 LEU B 328 1 14 HELIX 29 AD2 THR B 340 SER B 352 1 13 HELIX 30 AD3 GLN B 355 ALA B 371 1 17 HELIX 31 AD4 GLY B 372 LYS B 386 1 15 SHEET 1 AA1 7 GLU A 52 ILE A 55 0 SHEET 2 AA1 7 ARG A 33 THR A 38 1 N TYR A 36 O LEU A 54 SHEET 3 AA1 7 HIS A 5 ILE A 9 1 N ILE A 6 O ARG A 33 SHEET 4 AA1 7 LEU A 102 ASP A 106 1 O LEU A 102 N SER A 7 SHEET 5 AA1 7 VAL A 123 CYS A 127 1 O ILE A 124 N ILE A 103 SHEET 6 AA1 7 ASN A 178 VAL A 180 1 O ILE A 179 N CYS A 127 SHEET 7 AA1 7 PHE A 197 PHE A 199 1 O CYS A 198 N ASN A 178 SHEET 1 AA2 6 PHE A 272 ARG A 275 0 SHEET 2 AA2 6 GLN A 251 SER A 255 1 N MET A 254 O THR A 273 SHEET 3 AA2 6 LEU A 222 ILE A 225 1 N ILE A 225 O SER A 255 SHEET 4 AA2 6 LEU A 289 SER A 292 1 O ILE A 291 N LEU A 224 SHEET 5 AA2 6 LEU A 309 VAL A 311 1 O VAL A 310 N SER A 292 SHEET 6 AA2 6 GLY A 331 TYR A 333 1 O VAL A 332 N VAL A 311 SHEET 1 AA3 7 GLU B 52 ILE B 55 0 SHEET 2 AA3 7 ARG B 33 THR B 38 1 N TYR B 36 O GLU B 52 SHEET 3 AA3 7 HIS B 5 ILE B 9 1 N MET B 8 O THR B 35 SHEET 4 AA3 7 LEU B 102 ASP B 106 1 O LEU B 102 N SER B 7 SHEET 5 AA3 7 VAL B 123 CYS B 127 1 O LEU B 126 N TYR B 105 SHEET 6 AA3 7 ASN B 178 VAL B 180 1 O ILE B 179 N CYS B 127 SHEET 7 AA3 7 PHE B 197 PHE B 199 1 O CYS B 198 N VAL B 180 SHEET 1 AA4 6 PHE B 272 ARG B 275 0 SHEET 2 AA4 6 GLN B 251 SER B 255 1 N VAL B 252 O THR B 273 SHEET 3 AA4 6 LEU B 222 SER B 226 1 N ILE B 225 O SER B 255 SHEET 4 AA4 6 LEU B 289 SER B 292 1 O ILE B 291 N LEU B 224 SHEET 5 AA4 6 LEU B 309 VAL B 311 1 O VAL B 310 N SER B 292 SHEET 6 AA4 6 GLY B 331 TYR B 333 1 O VAL B 332 N VAL B 311 CRYST1 137.874 137.874 135.730 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007368 0.00000