HEADER OXYGEN TRANSPORT 02-OCT-21 7VLF TITLE OXY-DEOXY INTERMEDIATE OF V2 HEMOGLOBIN AT 26% OXYGEN SATURATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR A1 GLOBIN; COMPND 3 CHAIN: A, E; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: EXTRACELLULAR A2 GLOBIN; COMPND 6 CHAIN: B, F; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: EXTRACELLULAR B2 GLOBIN; COMPND 9 CHAIN: C, G; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: EXTRACELLULAR B1 GLOBIN; COMPND 12 CHAIN: D, H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMELLIBRACHIA SATSUMA; SOURCE 3 ORGANISM_COMMON: HYDROTHERMAL VENT TUBEWORM; SOURCE 4 ORGANISM_TAXID: 104711; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: LAMELLIBRACHIA SATSUMA; SOURCE 7 ORGANISM_COMMON: HYDROTHERMAL VENT TUBEWORM; SOURCE 8 ORGANISM_TAXID: 104711; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: LAMELLIBRACHIA SATSUMA; SOURCE 11 ORGANISM_COMMON: HYDROTHERMAL VENT TUBEWORM; SOURCE 12 ORGANISM_TAXID: 104711; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: LAMELLIBRACHIA SATSUMA; SOURCE 15 ORGANISM_COMMON: HYDROTHERMAL VENT TUBEWORM; SOURCE 16 ORGANISM_TAXID: 104711 KEYWDS ALLOSTERY, STRUCTURAL TRANSITION, GIANT HEMOGLOBIN, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.NUMOTO,S.ONODA,Y.KAWANO,H.OKUMURA,S.BABA,Y.FUKUMORI,K.MIKI,N.ITO REVDAT 3 29-NOV-23 7VLF 1 REMARK REVDAT 2 20-JUL-22 7VLF 1 JRNL REVDAT 1 18-MAY-22 7VLF 0 JRNL AUTH N.NUMOTO,S.ONODA,Y.KAWANO,H.OKUMURA,S.BABA,Y.FUKUMORI, JRNL AUTH 2 K.MIKI,N.ITO JRNL TITL STRUCTURES OF OXYGEN DISSOCIATION INTERMEDIATES OF 400 KDA JRNL TITL 2 V2 HEMOGLOBIN PROVIDE COARSE SNAPSHOTS OF THE PROTEIN JRNL TITL 3 ALLOSTERY. JRNL REF BIOPHYS PHYSICOBIO. V. 19 1 2022 JRNL REFN ESSN 2189-4779 JRNL PMID 35797404 JRNL DOI 10.2142/BIOPHYSICO.BPPB-V19.0019 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 56.630 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0100 - 6.2500 0.95 2733 150 0.1833 0.2253 REMARK 3 2 6.2500 - 4.9800 0.95 2702 136 0.2141 0.2601 REMARK 3 3 4.9800 - 4.3500 0.95 2701 145 0.1966 0.2048 REMARK 3 4 4.3500 - 3.9600 0.95 2714 144 0.2088 0.2342 REMARK 3 5 3.9600 - 3.6800 0.96 2708 126 0.2271 0.2800 REMARK 3 6 3.6800 - 3.4600 0.95 2696 151 0.2417 0.2754 REMARK 3 7 3.4600 - 3.2900 0.95 2677 138 0.2691 0.3087 REMARK 3 8 3.2900 - 3.1400 0.95 2659 154 0.2809 0.3234 REMARK 3 9 3.1400 - 3.0200 0.95 2678 153 0.2904 0.3022 REMARK 3 10 3.0200 - 2.9200 0.95 2700 156 0.3003 0.3322 REMARK 3 11 2.9200 - 2.8300 0.95 2663 135 0.3013 0.3128 REMARK 3 12 2.8300 - 2.7500 0.95 2699 155 0.3193 0.3309 REMARK 3 13 2.7500 - 2.6700 0.96 2699 122 0.3276 0.3291 REMARK 3 14 2.6700 - 2.6100 0.95 2677 153 0.3270 0.3522 REMARK 3 15 2.6100 - 2.5500 0.95 2684 133 0.3430 0.3427 REMARK 3 16 2.5500 - 2.5000 0.95 2693 141 0.3536 0.3598 REMARK 3 17 2.5000 - 2.4500 0.95 2696 128 0.3578 0.3751 REMARK 3 18 2.4500 - 2.4000 0.95 2673 141 0.3626 0.3307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.732 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.2000 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 9779 REMARK 3 ANGLE : 0.601 13350 REMARK 3 CHIRALITY : 0.034 1396 REMARK 3 PLANARITY : 0.004 1708 REMARK 3 DIHEDRAL : 18.959 5621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51085 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.53500 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3WCU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-17% (W/V) PEG 3350, 100MM HEPES REMARK 280 -NAOH PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 97.34000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.34000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 97.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 24-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 93640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 125570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -815.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 109.00900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 54.50450 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 94.40456 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 144 REMARK 465 GLY H 25 REMARK 465 ALA H 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 143 -6.75 -58.79 REMARK 500 PHE B 47 52.11 -113.00 REMARK 500 ASP C 46 32.37 -81.63 REMARK 500 THR C 145 40.91 -103.75 REMARK 500 PHE D 3 -61.76 -103.27 REMARK 500 PHE D 51 45.93 -88.68 REMARK 500 SER E 48 31.49 -85.47 REMARK 500 VAL E 49 6.27 -150.49 REMARK 500 ASN G 3 12.44 58.10 REMARK 500 THR G 26 -71.95 -73.86 REMARK 500 PHE H 3 -72.69 -98.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HEM A 200 NA 94.7 REMARK 620 3 HEM A 200 NB 96.3 88.8 REMARK 620 4 HEM A 200 NC 89.9 174.9 88.7 REMARK 620 5 HEM A 200 ND 90.2 91.7 173.5 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 95 NE2 REMARK 620 2 HEM B 201 NA 93.4 REMARK 620 3 HEM B 201 NB 74.3 87.9 REMARK 620 4 HEM B 201 NC 82.3 174.5 87.6 REMARK 620 5 HEM B 201 ND 103.6 93.3 177.6 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 109 OE1 REMARK 620 2 GLU B 109 OE2 47.0 REMARK 620 3 ASP B 135 OD1 75.3 76.6 REMARK 620 4 HOH B 308 O 91.0 137.5 87.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 99 NE2 REMARK 620 2 HEM C 200 NA 87.6 REMARK 620 3 HEM C 200 NB 90.3 87.9 REMARK 620 4 HEM C 200 NC 93.9 177.3 89.8 REMARK 620 5 HEM C 200 ND 92.0 90.8 177.3 91.5 REMARK 620 6 OXY C 201 O1 175.4 96.3 92.2 82.3 85.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 99 NE2 REMARK 620 2 HEM D 201 NA 84.8 REMARK 620 3 HEM D 201 NB 92.6 88.1 REMARK 620 4 HEM D 201 NC 101.3 173.8 90.7 REMARK 620 5 HEM D 201 ND 95.4 89.3 171.3 91.1 REMARK 620 6 OXY D 202 O1 174.3 100.9 87.1 73.0 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 94 NE2 REMARK 620 2 HEM E 200 NA 95.7 REMARK 620 3 HEM E 200 NB 103.4 90.2 REMARK 620 4 HEM E 200 NC 83.4 178.3 88.6 REMARK 620 5 HEM E 200 ND 78.0 90.2 178.5 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM F 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 95 NE2 REMARK 620 2 HEM F 201 NA 85.7 REMARK 620 3 HEM F 201 NB 73.0 88.3 REMARK 620 4 HEM F 201 NC 87.0 172.6 90.7 REMARK 620 5 HEM F 201 ND 98.8 89.7 171.7 90.3 REMARK 620 6 OXY F 202 O1 173.2 101.1 106.8 86.3 81.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA F 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN F 106 OD1 REMARK 620 2 GLU F 109 OE1 67.4 REMARK 620 3 ASP F 135 OD1 98.2 68.2 REMARK 620 4 ASP F 135 OD2 141.0 98.4 44.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM G 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS G 99 NE2 REMARK 620 2 HEM G 200 NA 91.0 REMARK 620 3 HEM G 200 NB 91.6 88.7 REMARK 620 4 HEM G 200 NC 92.9 176.0 90.1 REMARK 620 5 HEM G 200 ND 93.7 89.5 174.4 91.4 REMARK 620 6 OXY G 201 O1 176.8 92.2 88.7 84.0 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM H 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 99 NE2 REMARK 620 2 HEM H 201 NA 93.7 REMARK 620 3 HEM H 201 NB 89.1 89.3 REMARK 620 4 HEM H 201 NC 86.4 178.8 89.5 REMARK 620 5 HEM H 201 ND 93.0 89.9 177.8 91.3 REMARK 620 N 1 2 3 4 DBREF 7VLF A 1 146 UNP S0BBU7 S0BBU7_LAMSA 20 165 DBREF 7VLF B 1 144 UNP S0BBR6 S0BBR6_LAMSA 17 160 DBREF 7VLF C 1 150 UNP S0BCU7 S0BCU7_LAMSA 17 166 DBREF 7VLF D 1 149 UNP S0BAP9 S0BAP9_LAMSA 20 168 DBREF 7VLF E 1 146 UNP S0BBU7 S0BBU7_LAMSA 20 165 DBREF 7VLF F 1 144 UNP S0BBR6 S0BBR6_LAMSA 17 160 DBREF 7VLF G 1 150 UNP S0BCU7 S0BCU7_LAMSA 17 166 DBREF 7VLF H 1 149 UNP S0BAP9 S0BAP9_LAMSA 20 168 SEQRES 1 A 146 ASP CYS ASN ILE LEU GLN ARG LEU LYS VAL LYS MET GLN SEQRES 2 A 146 TRP ALA LYS ALA TYR GLY PHE GLY THR GLU ARG ALA LYS SEQRES 3 A 146 PHE GLY ASN SER LEU TRP THR SER ILE PHE ASN TYR ALA SEQRES 4 A 146 PRO ASP ALA ARG ASP LEU PHE LYS SER VAL LYS SER GLU SEQRES 5 A 146 ASP MET ARG SER PRO GLN PHE LYS ALA HIS ILE ALA ARG SEQRES 6 A 146 VAL ILE GLY GLY LEU ASP ARG VAL ILE SER MET PHE ASP SEQRES 7 A 146 ASN GLU ASP ALA LEU ASN ALA ASP LEU GLU HIS LEU LYS SEQRES 8 A 146 SER GLN HIS ASP PRO ARG GLY LEU ASP ALA LEU ASN PHE SEQRES 9 A 146 VAL VAL PHE GLY LYS ALA LEU PHE ALA THR VAL GLY GLY SEQRES 10 A 146 GLN PHE GLY VAL CYS PHE ASP LEU PRO ALA TRP GLU SER SEQRES 11 A 146 CYS TYR LYS VAL ILE ALA MET GLY ILE THR GLY ASN ASP SEQRES 12 A 146 MET PHE SER SEQRES 1 B 144 SER GLU CYS GLY PRO LEU GLN ARG LEU LYS VAL LYS ARG SEQRES 2 B 144 GLN TRP ALA GLU ALA TYR GLY SER GLY ASN GLY ARG GLU SEQRES 3 B 144 GLU PHE GLY HIS PHE ILE TRP ALA ASN VAL PHE LYS VAL SEQRES 4 B 144 ALA PRO SER ALA ARG ASP MET PHE LYS ARG VAL ARG GLY SEQRES 5 B 144 ASP ASN ILE TYR THR PRO ALA PHE ARG ALA HIS ALA THR SEQRES 6 B 144 ARG VAL LEU GLY GLY LEU ASP MET CYS VAL ALA LEU LEU SEQRES 7 B 144 ASP ASP GLU SER VAL LEU ASN THR GLN LEU ALA HIS LEU SEQRES 8 B 144 ALA SER GLN HIS SER SER ARG GLY VAL SER ALA GLU GLN SEQRES 9 B 144 TYR ASN VAL VAL GLU HIS ALA VAL MET MET GLY VAL GLU SEQRES 10 B 144 HIS GLU ILE GLY GLN ASN VAL PHE ASP LYS ASP ALA TRP SEQRES 11 B 144 GLN ALA CYS LEU ASP VAL ILE THR SER GLY ILE GLN GLY SEQRES 12 B 144 ASN SEQRES 1 C 150 SER SER ASN SER CYS THR THR GLU ASP ARG ARG GLU MET SEQRES 2 C 150 GLN LEU MET TRP ALA ASN VAL TRP SER ALA GLN PHE THR SEQRES 3 C 150 GLY ARG ARG LEU ALA ILE ALA GLN ALA VAL PHE LYS ASP SEQRES 4 C 150 LEU PHE ALA HIS VAL PRO ASP ALA VAL GLY LEU PHE ASP SEQRES 5 C 150 ARG VAL HIS GLY THR GLU ILE ASP SER SER GLU PHE LYS SEQRES 6 C 150 ALA HIS CYS ILE ARG VAL VAL ASN GLY LEU ASP SER ALA SEQRES 7 C 150 ILE GLY LEU LEU SER ASP PRO SER THR LEU ASN GLU GLN SEQRES 8 C 150 LEU SER HIS LEU ALA THR GLN HIS GLN GLU ARG ALA GLY SEQRES 9 C 150 VAL THR LYS GLY GLY PHE SER ALA ILE ALA GLN SER PHE SEQRES 10 C 150 LEU ARG VAL MET PRO GLN VAL ALA SER CYS PHE ASN PRO SEQRES 11 C 150 ASP ALA TRP SER ARG CYS PHE ASN ARG ILE THR ASN GLY SEQRES 12 C 150 MET THR GLU GLY LEU ALA GLU SEQRES 1 D 149 SER GLU PHE CYS SER GLU ALA ASP ALA THR ILE VAL ILE SEQRES 2 D 149 LYS GLN TRP ASN GLN ILE TYR ASN ALA GLY ILE GLY ALA SEQRES 3 D 149 LYS SER ARG TRP THR MET GLY ASN GLU ILE PHE SER SER SEQRES 4 D 149 LEU PHE LYS LEU LYS PRO GLU SER GLU VAL LEU PHE ASN SEQRES 5 D 149 ASN VAL ASN VAL ALA ASN MET SER SER GLY ALA PHE HIS SEQRES 6 D 149 ALA HIS THR VAL ARG VAL LEU SER GLY LEU ASP MET GLY SEQRES 7 D 149 ILE ASN TYR LEU ASN ASP ALA GLY THR LEU THR SER LEU SEQRES 8 D 149 THR ALA HIS LEU ALA ALA GLN HIS VAL ALA ARG THR GLY SEQRES 9 D 149 LEU LYS ALA VAL TYR PHE ASP ALA MET GLY LYS VAL LEU SEQRES 10 D 149 MET THR VAL LEU PRO SER LEU ILE ASP ASN PHE ASN PRO SEQRES 11 D 149 ASP ALA TRP ARG ASN CYS LEU LEU PRO LEU LYS ASN ALA SEQRES 12 D 149 ILE ALA LYS GLY LEU PRO SEQRES 1 E 146 ASP CYS ASN ILE LEU GLN ARG LEU LYS VAL LYS MET GLN SEQRES 2 E 146 TRP ALA LYS ALA TYR GLY PHE GLY THR GLU ARG ALA LYS SEQRES 3 E 146 PHE GLY ASN SER LEU TRP THR SER ILE PHE ASN TYR ALA SEQRES 4 E 146 PRO ASP ALA ARG ASP LEU PHE LYS SER VAL LYS SER GLU SEQRES 5 E 146 ASP MET ARG SER PRO GLN PHE LYS ALA HIS ILE ALA ARG SEQRES 6 E 146 VAL ILE GLY GLY LEU ASP ARG VAL ILE SER MET PHE ASP SEQRES 7 E 146 ASN GLU ASP ALA LEU ASN ALA ASP LEU GLU HIS LEU LYS SEQRES 8 E 146 SER GLN HIS ASP PRO ARG GLY LEU ASP ALA LEU ASN PHE SEQRES 9 E 146 VAL VAL PHE GLY LYS ALA LEU PHE ALA THR VAL GLY GLY SEQRES 10 E 146 GLN PHE GLY VAL CYS PHE ASP LEU PRO ALA TRP GLU SER SEQRES 11 E 146 CYS TYR LYS VAL ILE ALA MET GLY ILE THR GLY ASN ASP SEQRES 12 E 146 MET PHE SER SEQRES 1 F 144 SER GLU CYS GLY PRO LEU GLN ARG LEU LYS VAL LYS ARG SEQRES 2 F 144 GLN TRP ALA GLU ALA TYR GLY SER GLY ASN GLY ARG GLU SEQRES 3 F 144 GLU PHE GLY HIS PHE ILE TRP ALA ASN VAL PHE LYS VAL SEQRES 4 F 144 ALA PRO SER ALA ARG ASP MET PHE LYS ARG VAL ARG GLY SEQRES 5 F 144 ASP ASN ILE TYR THR PRO ALA PHE ARG ALA HIS ALA THR SEQRES 6 F 144 ARG VAL LEU GLY GLY LEU ASP MET CYS VAL ALA LEU LEU SEQRES 7 F 144 ASP ASP GLU SER VAL LEU ASN THR GLN LEU ALA HIS LEU SEQRES 8 F 144 ALA SER GLN HIS SER SER ARG GLY VAL SER ALA GLU GLN SEQRES 9 F 144 TYR ASN VAL VAL GLU HIS ALA VAL MET MET GLY VAL GLU SEQRES 10 F 144 HIS GLU ILE GLY GLN ASN VAL PHE ASP LYS ASP ALA TRP SEQRES 11 F 144 GLN ALA CYS LEU ASP VAL ILE THR SER GLY ILE GLN GLY SEQRES 12 F 144 ASN SEQRES 1 G 150 SER SER ASN SER CYS THR THR GLU ASP ARG ARG GLU MET SEQRES 2 G 150 GLN LEU MET TRP ALA ASN VAL TRP SER ALA GLN PHE THR SEQRES 3 G 150 GLY ARG ARG LEU ALA ILE ALA GLN ALA VAL PHE LYS ASP SEQRES 4 G 150 LEU PHE ALA HIS VAL PRO ASP ALA VAL GLY LEU PHE ASP SEQRES 5 G 150 ARG VAL HIS GLY THR GLU ILE ASP SER SER GLU PHE LYS SEQRES 6 G 150 ALA HIS CYS ILE ARG VAL VAL ASN GLY LEU ASP SER ALA SEQRES 7 G 150 ILE GLY LEU LEU SER ASP PRO SER THR LEU ASN GLU GLN SEQRES 8 G 150 LEU SER HIS LEU ALA THR GLN HIS GLN GLU ARG ALA GLY SEQRES 9 G 150 VAL THR LYS GLY GLY PHE SER ALA ILE ALA GLN SER PHE SEQRES 10 G 150 LEU ARG VAL MET PRO GLN VAL ALA SER CYS PHE ASN PRO SEQRES 11 G 150 ASP ALA TRP SER ARG CYS PHE ASN ARG ILE THR ASN GLY SEQRES 12 G 150 MET THR GLU GLY LEU ALA GLU SEQRES 1 H 149 SER GLU PHE CYS SER GLU ALA ASP ALA THR ILE VAL ILE SEQRES 2 H 149 LYS GLN TRP ASN GLN ILE TYR ASN ALA GLY ILE GLY ALA SEQRES 3 H 149 LYS SER ARG TRP THR MET GLY ASN GLU ILE PHE SER SER SEQRES 4 H 149 LEU PHE LYS LEU LYS PRO GLU SER GLU VAL LEU PHE ASN SEQRES 5 H 149 ASN VAL ASN VAL ALA ASN MET SER SER GLY ALA PHE HIS SEQRES 6 H 149 ALA HIS THR VAL ARG VAL LEU SER GLY LEU ASP MET GLY SEQRES 7 H 149 ILE ASN TYR LEU ASN ASP ALA GLY THR LEU THR SER LEU SEQRES 8 H 149 THR ALA HIS LEU ALA ALA GLN HIS VAL ALA ARG THR GLY SEQRES 9 H 149 LEU LYS ALA VAL TYR PHE ASP ALA MET GLY LYS VAL LEU SEQRES 10 H 149 MET THR VAL LEU PRO SER LEU ILE ASP ASN PHE ASN PRO SEQRES 11 H 149 ASP ALA TRP ARG ASN CYS LEU LEU PRO LEU LYS ASN ALA SEQRES 12 H 149 ILE ALA LYS GLY LEU PRO HET NAG I 1 14 HET FUC I 2 10 HET NAG J 1 14 HET FUC J 2 10 HET HEM A 200 43 HET HEM B 201 43 HET CA B 202 1 HET HEM C 200 43 HET OXY C 201 2 HET HEM D 201 43 HET OXY D 202 2 HET HEM E 200 43 HET HEM F 201 43 HET OXY F 202 2 HET CA F 203 1 HET HEM G 200 43 HET OXY G 201 2 HET HEM H 201 43 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETNAM OXY OXYGEN MOLECULE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN HEM HEME FORMUL 9 NAG 2(C8 H15 N O6) FORMUL 9 FUC 2(C6 H12 O5) FORMUL 11 HEM 8(C34 H32 FE N4 O4) FORMUL 13 CA 2(CA 2+) FORMUL 15 OXY 4(O2) FORMUL 25 HOH *113(H2 O) HELIX 1 AA1 ASN A 3 GLY A 19 1 17 HELIX 2 AA2 GLY A 21 ALA A 39 1 19 HELIX 3 AA3 PRO A 40 LYS A 50 5 11 HELIX 4 AA4 SER A 56 MET A 76 1 21 HELIX 5 AA5 ASN A 79 ASP A 95 1 17 HELIX 6 AA6 PRO A 96 GLY A 98 5 3 HELIX 7 AA7 ALA A 101 GLY A 120 1 20 HELIX 8 AA8 ASP A 124 THR A 140 1 17 HELIX 9 AA9 ASN A 142 SER A 146 5 5 HELIX 10 AB1 GLY B 4 GLY B 20 1 17 HELIX 11 AB2 GLY B 24 ALA B 40 1 17 HELIX 12 AB3 PRO B 41 PHE B 47 5 7 HELIX 13 AB4 THR B 57 LEU B 77 1 21 HELIX 14 AB5 ASP B 80 SER B 97 1 18 HELIX 15 AB6 SER B 101 GLY B 121 1 21 HELIX 16 AB7 ASP B 126 GLY B 143 1 18 HELIX 17 AB8 THR C 6 TRP C 21 1 16 HELIX 18 AB9 GLY C 27 VAL C 44 1 18 HELIX 19 AC1 PRO C 45 PHE C 51 5 7 HELIX 20 AC2 SER C 61 LEU C 81 1 21 HELIX 21 AC3 ASP C 84 GLN C 100 1 17 HELIX 22 AC4 THR C 106 ALA C 125 1 20 HELIX 23 AC5 ASN C 129 THR C 145 1 17 HELIX 24 AC6 SER D 5 TYR D 20 1 16 HELIX 25 AC7 GLY D 25 LYS D 44 1 20 HELIX 26 AC8 PRO D 45 PHE D 51 5 7 HELIX 27 AC9 SER D 61 TYR D 81 1 21 HELIX 28 AD1 ASP D 84 ARG D 102 1 19 HELIX 29 AD2 LYS D 106 LEU D 121 1 16 HELIX 30 AD3 PRO D 122 LEU D 124 5 3 HELIX 31 AD4 ASN D 129 ALA D 145 1 17 HELIX 32 AD5 ASN E 3 GLY E 19 1 17 HELIX 33 AD6 GLY E 21 ALA E 39 1 19 HELIX 34 AD7 PRO E 40 LYS E 50 5 11 HELIX 35 AD8 SER E 56 SER E 75 1 20 HELIX 36 AD9 ASN E 79 ASP E 95 1 17 HELIX 37 AE1 PRO E 96 GLY E 98 5 3 HELIX 38 AE2 ALA E 101 GLY E 120 1 20 HELIX 39 AE3 ASP E 124 GLY E 141 1 18 HELIX 40 AE4 ASN E 142 SER E 146 5 5 HELIX 41 AE5 GLY F 4 GLY F 20 1 17 HELIX 42 AE6 GLY F 24 ALA F 40 1 17 HELIX 43 AE7 PRO F 41 LYS F 48 5 8 HELIX 44 AE8 THR F 57 LEU F 77 1 21 HELIX 45 AE9 ASP F 80 SER F 97 1 18 HELIX 46 AF1 SER F 101 GLY F 121 1 21 HELIX 47 AF2 ASP F 126 GLY F 143 1 18 HELIX 48 AF3 THR G 6 TRP G 21 1 16 HELIX 49 AF4 PHE G 25 VAL G 44 1 20 HELIX 50 AF5 PRO G 45 PHE G 51 5 7 HELIX 51 AF6 SER G 61 LEU G 81 1 21 HELIX 52 AF7 ASP G 84 GLN G 100 1 17 HELIX 53 AF8 THR G 106 ALA G 125 1 20 HELIX 54 AF9 ASN G 129 THR G 145 1 17 HELIX 55 AG1 SER H 5 TYR H 20 1 16 HELIX 56 AG2 SER H 28 LYS H 44 1 17 HELIX 57 AG3 PRO H 45 ASN H 52 5 8 HELIX 58 AG4 SER H 61 TYR H 81 1 21 HELIX 59 AG5 ASP H 84 ARG H 102 1 19 HELIX 60 AG6 LYS H 106 LEU H 121 1 16 HELIX 61 AG7 PRO H 122 LEU H 124 5 3 HELIX 62 AG8 ASN H 129 ALA H 145 1 17 SSBOND 1 CYS A 2 CYS A 131 1555 1555 2.03 SSBOND 2 CYS A 122 CYS C 127 1555 1555 2.03 SSBOND 3 CYS B 3 CYS B 133 1555 1555 2.03 SSBOND 4 CYS C 5 CYS C 136 1555 1555 2.03 SSBOND 5 CYS D 4 CYS D 136 1555 1555 2.04 SSBOND 6 CYS E 2 CYS E 131 1555 1555 2.03 SSBOND 7 CYS E 122 CYS G 127 1555 1555 2.03 SSBOND 8 CYS F 3 CYS F 133 1555 1555 2.03 SSBOND 9 CYS G 5 CYS G 136 1555 1555 2.03 SSBOND 10 CYS H 4 CYS H 136 1555 1555 2.03 LINK ND2 ASN D 58 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN H 58 C1 NAG J 1 1555 1555 1.44 LINK O6 NAG I 1 C1 FUC I 2 1555 1555 1.45 LINK O6 NAG J 1 C1 FUC J 2 1555 1555 1.45 LINK NE2 HIS A 94 FE HEM A 200 1555 1555 2.20 LINK NE2 HIS B 95 FE HEM B 201 1555 1555 2.17 LINK OE1 GLU B 109 CA CA B 202 1555 1555 2.70 LINK OE2 GLU B 109 CA CA B 202 1555 1555 2.80 LINK OD1 ASP B 135 CA CA B 202 1555 1555 2.50 LINK CA CA B 202 O HOH B 308 1555 1555 2.51 LINK NE2 HIS C 99 FE HEM C 200 1555 1555 2.20 LINK FE HEM C 200 O1 OXY C 201 1555 1555 1.80 LINK NE2 HIS D 99 FE HEM D 201 1555 1555 2.20 LINK FE HEM D 201 O1 OXY D 202 1555 1555 1.80 LINK NE2 HIS E 94 FE HEM E 200 1555 1555 2.20 LINK NE2 HIS F 95 FE HEM F 201 1555 1555 2.20 LINK OD1 ASN F 106 CA CA F 203 1555 1555 2.54 LINK OE1 GLU F 109 CA CA F 203 1555 1555 2.74 LINK OD1 ASP F 135 CA CA F 203 1555 1555 2.45 LINK OD2 ASP F 135 CA CA F 203 1555 1555 3.15 LINK FE HEM F 201 O1 OXY F 202 1555 1555 1.80 LINK NE2 HIS G 99 FE HEM G 200 1555 1555 2.20 LINK FE HEM G 200 O1 OXY G 201 1555 1555 1.80 LINK NE2 HIS H 99 FE HEM H 201 1555 1555 2.20 CRYST1 109.009 109.009 194.680 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009174 0.005296 0.000000 0.00000 SCALE2 0.000000 0.010593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005137 0.00000