data_7VM9 # _entry.id 7VM9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7VM9 pdb_00007vm9 10.2210/pdb7vm9/pdb WWPDB D_1300019262 ? ? BMRB 36448 ? 10.13018/BMR36448 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-16 2 'Structure model' 1 1 2022-04-13 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7VM9 _pdbx_database_status.recvd_initial_deposition_date 2021-10-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structures of DNA minidumbbell formed with two regular CTTTG pentaloops' _pdbx_database_related.db_id 36448 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ngai, C.K.' 1 0000-0003-0088-4961 'Guo, P.' 2 0000-0001-7760-5786 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs Lett.' _citation.journal_id_ASTM FEBLAL _citation.journal_id_CSD 0165 _citation.journal_id_ISSN 0014-5793 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 596 _citation.language ? _citation.page_first 826 _citation.page_last 840 _citation.title ;A purine and a backbone discontinuous site alter the structure and thermal stability of DNA minidumbbells containing two pentaloops. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/1873-3468.14293 _citation.pdbx_database_id_PubMed 35060128 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ngai, C.K.' 1 ? primary 'Lam, S.L.' 2 ? primary 'Lee, H.K.' 3 ? primary 'Guo, P.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*TP*TP*GP*CP*TP*TP*TP*G)-3') ; 3016.974 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 9 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(DT)(DT)(DG)(DC)(DT)(DT)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTTTGCTTTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 101 NA NA A . C 2 NA 1 102 102 NA NA A . D 2 NA 1 103 103 NA NA A . E 2 NA 1 104 104 NA NA A . F 2 NA 1 105 105 NA NA A . G 2 NA 1 106 106 NA NA A . H 2 NA 1 107 107 NA NA A . I 2 NA 1 108 108 NA NA A . J 2 NA 1 109 109 NA NA A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7VM9 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7VM9 _struct.title 'Solution NMR structures of DNA minidumbbell formed with two regular CTTTG pentaloops' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7VM9 _struct_keywords.text 'DNA, DNA STRUCTURE, MINIDUMBBELL, CTTTG PENTALOOP' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7VM9 _struct_ref.pdbx_db_accession 7VM9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7VM9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7VM9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1030 ? 1 MORE -83 ? 1 'SSA (A^2)' 1930 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 2 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.630 ? ? metalc2 metalc ? ? A DT 2 OP2 ? ? ? 1_555 D NA . NA ? ? A DT 2 A NA 103 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc3 metalc ? ? A DT 3 O2 ? ? ? 1_555 G NA . NA ? ? A DT 3 A NA 106 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc4 metalc ? ? A DT 3 OP2 ? ? ? 1_555 J NA . NA ? ? A DT 3 A NA 109 1_555 ? ? ? ? ? ? ? 2.477 ? ? metalc5 metalc ? ? A DT 4 "O4'" ? ? ? 1_555 G NA . NA ? ? A DT 4 A NA 106 1_555 ? ? ? ? ? ? ? 2.915 ? ? metalc6 metalc ? ? A DT 4 O2 ? ? ? 1_555 G NA . NA ? ? A DT 4 A NA 106 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc7 metalc ? ? A DT 4 OP1 ? ? ? 1_555 I NA . NA ? ? A DT 4 A NA 108 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc8 metalc ? ? A DG 5 OP1 ? ? ? 1_555 B NA . NA ? ? A DG 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.693 ? ? metalc9 metalc ? ? A DG 5 OP2 ? ? ? 1_555 B NA . NA ? ? A DG 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.589 ? ? metalc10 metalc ? ? A DG 5 O6 ? ? ? 1_555 G NA . NA ? ? A DG 5 A NA 106 1_555 ? ? ? ? ? ? ? 2.598 ? ? metalc11 metalc ? ? A DG 5 OP1 ? ? ? 1_555 I NA . NA ? ? A DG 5 A NA 108 1_555 ? ? ? ? ? ? ? 2.569 ? ? metalc12 metalc ? ? A DG 5 "O5'" ? ? ? 1_555 I NA . NA ? ? A DG 5 A NA 108 1_555 ? ? ? ? ? ? ? 2.670 ? ? metalc13 metalc ? ? A DC 6 OP1 ? ? ? 1_555 C NA . NA ? ? A DC 6 A NA 102 1_555 ? ? ? ? ? ? ? 2.561 ? ? metalc14 metalc ? ? A DT 7 OP1 ? ? ? 1_555 C NA . NA ? ? A DT 7 A NA 102 1_555 ? ? ? ? ? ? ? 2.857 ? ? metalc15 metalc ? ? A DT 7 OP2 ? ? ? 1_555 C NA . NA ? ? A DT 7 A NA 102 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc16 metalc ? ? A DT 7 "O4'" ? ? ? 1_555 H NA . NA ? ? A DT 7 A NA 107 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc17 metalc ? ? A DT 7 O2 ? ? ? 1_555 H NA . NA ? ? A DT 7 A NA 107 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc18 metalc ? ? A DT 8 O2 ? ? ? 1_555 E NA . NA ? ? A DT 8 A NA 104 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc19 metalc ? ? A DT 8 OP1 ? ? ? 1_555 H NA . NA ? ? A DT 8 A NA 107 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc20 metalc ? ? A DT 9 OP2 ? ? ? 1_555 E NA . NA ? ? A DT 9 A NA 104 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc21 metalc ? ? A DT 9 "O3'" ? ? ? 1_555 F NA . NA ? ? A DT 9 A NA 105 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc22 metalc ? ? A DG 10 OP1 ? ? ? 1_555 E NA . NA ? ? A DG 10 A NA 104 1_555 ? ? ? ? ? ? ? 2.512 ? ? metalc23 metalc ? ? A DG 10 OP2 ? ? ? 1_555 F NA . NA ? ? A DG 10 A NA 105 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc24 metalc ? ? A DG 10 "O4'" ? ? ? 1_555 F NA . NA ? ? A DG 10 A NA 105 1_555 ? ? ? ? ? ? ? 2.720 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 1 A DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 1 A DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 1 A DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 6 A DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 6 A DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 6 A DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 2 ? A DT 2 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP2 ? A DT 2 ? A DT 2 ? 1_555 58.7 ? 2 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 "O4'" ? A DT 4 ? A DT 4 ? 1_555 67.5 ? 3 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O2 ? A DT 4 ? A DT 4 ? 1_555 78.0 ? 4 "O4'" ? A DT 4 ? A DT 4 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O2 ? A DT 4 ? A DT 4 ? 1_555 80.7 ? 5 O2 ? A DT 3 ? A DT 3 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 75.0 ? 6 "O4'" ? A DT 4 ? A DT 4 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 119.6 ? 7 O2 ? A DT 4 ? A DT 4 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 134.8 ? 8 OP1 ? A DT 4 ? A DT 4 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 OP1 ? A DG 5 ? A DG 5 ? 1_555 107.8 ? 9 OP1 ? A DT 4 ? A DT 4 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 "O5'" ? A DG 5 ? A DG 5 ? 1_555 107.4 ? 10 OP1 ? A DG 5 ? A DG 5 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 "O5'" ? A DG 5 ? A DG 5 ? 1_555 56.9 ? 11 OP1 ? A DG 5 ? A DG 5 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP2 ? A DG 5 ? A DG 5 ? 1_555 57.6 ? 12 OP1 ? A DC 6 ? A DC 6 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP1 ? A DT 7 ? A DT 7 ? 1_555 123.0 ? 13 OP1 ? A DC 6 ? A DC 6 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DT 7 ? A DT 7 ? 1_555 153.2 ? 14 OP1 ? A DT 7 ? A DT 7 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DT 7 ? A DT 7 ? 1_555 54.8 ? 15 "O4'" ? A DT 7 ? A DT 7 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O2 ? A DT 7 ? A DT 7 ? 1_555 80.7 ? 16 "O4'" ? A DT 7 ? A DT 7 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP1 ? A DT 8 ? A DT 8 ? 1_555 69.3 ? 17 O2 ? A DT 7 ? A DT 7 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP1 ? A DT 8 ? A DT 8 ? 1_555 102.5 ? 18 O2 ? A DT 8 ? A DT 8 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP2 ? A DT 9 ? A DT 9 ? 1_555 91.0 ? 19 O2 ? A DT 8 ? A DT 8 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DG 10 ? A DG 10 ? 1_555 122.9 ? 20 OP2 ? A DT 9 ? A DT 9 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DG 10 ? A DG 10 ? 1_555 111.7 ? 21 "O3'" ? A DT 9 ? A DT 9 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DG 10 ? A DG 10 ? 1_555 57.4 ? 22 "O3'" ? A DT 9 ? A DT 9 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 "O4'" ? A DG 10 ? A DG 10 ? 1_555 67.0 ? 23 OP2 ? A DG 10 ? A DG 10 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 "O4'" ? A DG 10 ? A DG 10 ? 1_555 90.9 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.67 108.30 2.37 0.30 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.13 108.30 1.83 0.30 N 3 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.07 108.30 2.77 0.30 N 4 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.42 108.30 3.12 0.30 N 5 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.11 119.70 7.41 1.20 Y 6 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.57 108.30 4.27 0.30 N 7 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DT 9 ? ? 127.29 119.70 7.59 1.20 Y 8 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 114.86 108.30 6.56 0.30 N 9 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.03 108.30 2.73 0.30 N 10 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.43 108.30 3.13 0.30 N 11 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.84 108.30 4.54 0.30 N 12 2 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.38 119.70 7.68 1.20 Y 13 2 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.13 108.30 1.83 0.30 N 14 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.32 108.30 4.02 0.30 N 15 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.79 108.30 3.49 0.30 N 16 2 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 127.38 119.70 7.68 1.20 Y 17 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.49 108.30 3.19 0.30 N 18 2 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.29 119.70 7.59 1.20 Y 19 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.93 108.30 3.63 0.30 N 20 2 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DT 9 ? ? 126.93 119.70 7.23 1.20 Y 21 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 114.22 108.30 5.92 0.30 N 22 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.07 108.30 2.77 0.30 N 23 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.12 108.30 3.82 0.30 N 24 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.80 108.30 3.50 0.30 N 25 3 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.10 119.70 7.40 1.20 Y 26 3 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.19 108.30 2.89 0.30 N 27 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.05 108.30 4.75 0.30 N 28 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.79 108.30 3.49 0.30 N 29 3 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 127.58 119.70 7.88 1.20 Y 30 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.30 108.30 3.00 0.30 N 31 3 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 128.21 119.70 8.51 1.20 Y 32 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.45 108.30 4.15 0.30 N 33 3 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DT 9 ? ? 127.18 119.70 7.48 1.20 Y 34 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 113.37 108.30 5.07 0.30 N 35 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.30 108.30 2.00 0.30 N 36 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.62 108.30 3.32 0.30 N 37 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.91 108.30 2.61 0.30 N 38 4 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.07 119.70 7.37 1.20 Y 39 4 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.68 108.30 2.38 0.30 N 40 4 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 112.50 108.30 4.20 0.30 N 41 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.95 108.30 3.65 0.30 N 42 4 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 127.24 119.70 7.54 1.20 Y 43 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.70 108.30 5.40 0.30 N 44 4 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 128.25 119.70 8.55 1.20 Y 45 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.63 108.30 3.33 0.30 N 46 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.00 108.30 3.70 0.30 N 47 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.65 108.30 2.35 0.30 N 48 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.63 108.30 3.33 0.30 N 49 5 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 126.92 119.70 7.22 1.20 Y 50 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.66 108.30 3.36 0.30 N 51 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.09 108.30 2.79 0.30 N 52 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.17 108.30 2.87 0.30 N 53 5 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 127.11 119.70 7.41 1.20 Y 54 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.19 108.30 3.89 0.30 N 55 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.92 108.30 3.62 0.30 N 56 5 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DT 9 ? ? 127.01 119.70 7.31 1.20 Y 57 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 113.91 108.30 5.61 0.30 N 58 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.32 108.30 2.02 0.30 N 59 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.40 108.30 5.10 0.30 N 60 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.02 108.30 3.72 0.30 N 61 6 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.10 119.70 7.40 1.20 Y 62 6 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.72 108.30 2.42 0.30 N 63 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 113.98 108.30 5.68 0.30 N 64 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.34 108.30 3.04 0.30 N 65 6 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 126.98 119.70 7.28 1.20 Y 66 6 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.75 108.30 4.45 0.30 N 67 6 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 128.36 119.70 8.66 1.20 Y 68 6 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.16 108.30 2.86 0.30 N 69 6 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 113.81 108.30 5.51 0.30 N 70 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.82 108.30 3.52 0.30 N 71 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.16 108.30 2.86 0.30 N 72 7 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 111.69 108.30 3.39 0.30 N 73 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.40 108.30 3.10 0.30 N 74 7 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 127.07 119.70 7.37 1.20 Y 75 7 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.50 108.30 2.20 0.30 N 76 7 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.88 108.30 3.58 0.30 N 77 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 114.25 108.30 5.95 0.30 N 78 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.62 108.30 4.32 0.30 N 79 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.82 108.30 4.52 0.30 N 80 8 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 127.60 119.70 7.90 1.20 Y 81 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.87 108.30 3.57 0.30 N 82 8 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 127.50 119.70 7.80 1.20 Y 83 8 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.40 108.30 4.10 0.30 N 84 8 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 128.23 119.70 8.53 1.20 Y 85 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.54 108.30 4.24 0.30 N 86 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.90 108.30 4.60 0.30 N 87 8 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.80 108.30 3.50 0.30 N 88 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.16 108.30 2.86 0.30 N 89 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.76 108.30 2.46 0.30 N 90 9 "C3'" A DT 2 ? ? "O3'" A DT 2 ? ? P A DT 3 ? ? 126.98 119.70 7.28 1.20 Y 91 9 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.38 108.30 2.08 0.30 N 92 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.39 108.30 3.09 0.30 N 93 9 "C3'" A DG 5 ? ? "O3'" A DG 5 ? ? P A DC 6 ? ? 127.68 119.70 7.98 1.20 Y 94 9 "C3'" A DC 6 ? ? "O3'" A DC 6 ? ? P A DT 7 ? ? 127.29 119.70 7.59 1.20 Y 95 9 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.13 108.30 3.83 0.30 N 96 9 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.80 119.70 8.10 1.20 Y 97 9 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.78 108.30 2.48 0.30 N 98 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 113.38 108.30 5.08 0.30 N 99 9 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.88 108.30 2.58 0.30 N 100 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.85 108.30 2.55 0.30 N 101 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 110.67 108.30 2.37 0.30 N 102 10 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.70 108.30 2.40 0.30 N 103 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.50 108.30 2.20 0.30 N 104 10 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 114.15 108.30 5.85 0.30 N 105 10 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 129.14 119.70 9.44 1.20 Y 106 10 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.47 108.30 4.17 0.30 N 107 10 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.12 122.90 -3.78 0.60 N 108 10 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.78 108.30 4.48 0.30 N 109 10 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.45 108.30 3.15 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 DC A 1 ? ? 0.084 'SIDE CHAIN' 2 2 DT A 2 ? ? 0.066 'SIDE CHAIN' 3 2 DG A 10 ? ? 0.074 'SIDE CHAIN' 4 5 DC A 1 ? ? 0.077 'SIDE CHAIN' 5 5 DT A 2 ? ? 0.060 'SIDE CHAIN' 6 6 DC A 1 ? ? 0.073 'SIDE CHAIN' 7 6 DT A 2 ? ? 0.066 'SIDE CHAIN' 8 6 DT A 3 ? ? 0.077 'SIDE CHAIN' 9 7 DC A 1 ? ? 0.061 'SIDE CHAIN' 10 8 DC A 1 ? ? 0.063 'SIDE CHAIN' 11 8 DT A 2 ? ? 0.076 'SIDE CHAIN' 12 10 DT A 2 ? ? 0.078 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7VM9 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7VM9 _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7VM9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.0 mM NA- DNA (5'-D(*CP*TP*TP*TP*GP*CP*TP*TP*TP*G)-3'), 0.02 mM NA- DSS, 10 mM NA- NaPi, 100% D2O ; _pdbx_nmr_sample_details.solvent_system '100% D2O' _pdbx_nmr_sample_details.label CTTTG2 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*CP*TP*TP*TP*GP*CP*TP*TP*TP*G)-3') ; 1.0 ? mM NA- 1 DSS 0.02 ? mM NA- 1 NaPi 10 ? mM NA- # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 mM NaPi' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label Normal _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D DQF-COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_refine.entry_id 7VM9 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber 16 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'structure calculation' Amber 16 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 'chemical shift assignment' TopSpin 3.5 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 NA NA NA N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 # _ndb_struct_conf_na.entry_id 7VM9 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 5 1_555 -0.668 -0.115 -0.501 7.168 -0.614 2.374 1 A_DC1:DG5_A A 1 ? A 5 ? 19 1 1 A DG 10 1_555 A DC 6 1_555 0.609 -0.124 -0.372 10.949 -8.090 2.803 2 A_DG10:DC6_A A 10 ? A 6 ? 19 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 5 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 10 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DC _ndb_struct_na_base_pair_step.j_label_seq_id_2 6 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift 0.106 _ndb_struct_na_base_pair_step.slide 0.655 _ndb_struct_na_base_pair_step.rise 3.284 _ndb_struct_na_base_pair_step.tilt -0.566 _ndb_struct_na_base_pair_step.roll 3.086 _ndb_struct_na_base_pair_step.twist 38.417 _ndb_struct_na_base_pair_step.x_displacement 0.606 _ndb_struct_na_base_pair_step.y_displacement -0.231 _ndb_struct_na_base_pair_step.helical_rise 3.323 _ndb_struct_na_base_pair_step.inclination 4.680 _ndb_struct_na_base_pair_step.tip 0.858 _ndb_struct_na_base_pair_step.helical_twist 38.540 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DC1DG10:DC6DG5_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 10 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 6 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 7VM9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_