HEADER HYDROLASE 13-OCT-21 7VOH TITLE THE A-GLUCOSIDASE QSGH13 FROM QIPENGYUANIA SEOHAENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE QSGH13; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: QIPENGYUANIA SEOHAENSIS; SOURCE 3 ORGANISM_TAXID: 266951; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS A-GLUCOSIDASE/GH13, CARBOHYDRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,X.Y.ZHAI REVDAT 3 29-NOV-23 7VOH 1 REMARK REVDAT 2 15-FEB-23 7VOH 1 JRNL REVDAT 1 02-MAR-22 7VOH 0 JRNL AUTH X.ZHAI,K.WU,R.JI,Y.ZHAO,J.LU,Z.YU,X.XU,J.HUANG JRNL TITL STRUCTURE AND FUNCTION INSIGHT OF THE ALPHA-GLUCOSIDASE JRNL TITL 2 QSGH13 FROM QIPENGYUANIA SEOHAENSIS SP. SW-135. JRNL REF FRONT MICROBIOL V. 13 49585 2022 JRNL REFN ESSN 1664-302X JRNL PMID 35308395 JRNL DOI 10.3389/FMICB.2022.849585 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 63387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3245 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 226 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 1.01300 REMARK 3 B33 (A**2) : -0.47300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.840 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8496 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7661 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11592 ; 1.377 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17630 ; 1.380 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1033 ; 7.507 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 503 ;36.240 ;21.968 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1258 ;14.672 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 65 ;17.811 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1049 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9820 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2082 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2153 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 16 ; 0.125 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4172 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 684 ; 0.243 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4146 ; 1.528 ; 2.311 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4143 ; 1.528 ; 2.311 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5173 ; 2.414 ; 3.458 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5174 ; 2.414 ; 3.458 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4350 ; 1.338 ; 2.363 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4351 ; 1.338 ; 2.363 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6419 ; 2.111 ; 3.506 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6420 ; 2.110 ; 3.506 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS AND I_ REMARK 3 PLUS/MINUS COLUMNS. REMARK 3 HYDROGENS HAVE BEEN ADDED IN THEIR RIDING POSITIONS REMARK 4 REMARK 4 7VOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63387 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.197 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.14 REMARK 200 R MERGE FOR SHELL (I) : 0.24600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6AAV REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 0.2 MNACL, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.40750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.65200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.95900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.65200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.40750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.95900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 498 REMARK 465 THR A 526 REMARK 465 ASP A 527 REMARK 465 THR A 528 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 223 REMARK 465 GLU B 496 REMARK 465 CYS B 497 REMARK 465 ASP B 498 REMARK 465 ASP B 499 REMARK 465 THR B 526 REMARK 465 ASP B 527 REMARK 465 THR B 528 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 487 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 500 SG REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 470 GLU B 501 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 808 O HOH A 885 1.71 REMARK 500 O HOH B 746 O HOH B 809 1.97 REMARK 500 NH2 ARG A 429 O HOH A 701 2.04 REMARK 500 O HOH B 926 O HOH B 1008 2.04 REMARK 500 OD1 ASP B 27 O HOH B 701 2.08 REMARK 500 OD1 ASP A 329 O HOH A 702 2.09 REMARK 500 O GLU B 525 O HOH B 702 2.10 REMARK 500 OG SER A 395 O HOH A 703 2.11 REMARK 500 OG SER A 24 OD1 ASP A 31 2.12 REMARK 500 OG1 THR A 504 O HOH A 704 2.12 REMARK 500 O HOH A 1098 O HOH B 1043 2.14 REMARK 500 O HOH B 828 O HOH B 970 2.15 REMARK 500 O HOH A 827 O HOH A 1013 2.16 REMARK 500 O HOH B 958 O HOH B 982 2.16 REMARK 500 O HOH B 823 O HOH B 943 2.16 REMARK 500 O HOH B 977 O HOH B 1020 2.18 REMARK 500 OD1 ASP A 23 O HOH A 705 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 22 114.97 -168.56 REMARK 500 ASN A 119 -168.00 -175.99 REMARK 500 PHE A 166 -139.89 -111.42 REMARK 500 ALA A 203 62.13 24.06 REMARK 500 ASP A 223 49.79 -70.58 REMARK 500 HIS A 285 -151.63 -113.24 REMARK 500 ASN A 327 -166.58 -165.01 REMARK 500 LEU A 392 70.91 -101.98 REMARK 500 ALA A 411 19.46 54.38 REMARK 500 SER A 415 119.35 -161.78 REMARK 500 HIS A 460 -13.74 -151.97 REMARK 500 GLU A 478 128.63 -171.25 REMARK 500 CYS A 500 -74.34 -88.29 REMARK 500 MET B 22 119.70 -162.76 REMARK 500 ASN B 119 -167.25 -177.52 REMARK 500 ALA B 133 153.15 -45.33 REMARK 500 PHE B 166 -149.75 -107.19 REMARK 500 ALA B 203 57.64 31.88 REMARK 500 ASP B 271 60.53 33.73 REMARK 500 HIS B 285 -154.77 -119.36 REMARK 500 TRP B 312 79.14 -115.22 REMARK 500 GLU B 314 -77.96 -63.57 REMARK 500 GLU B 315 179.26 53.22 REMARK 500 LEU B 392 75.87 -106.79 REMARK 500 ALA B 411 17.61 57.30 REMARK 500 HIS B 460 31.56 -158.80 REMARK 500 ASP B 471 -17.64 74.44 REMARK 500 ALA B 479 137.68 -172.46 REMARK 500 GLU B 501 165.22 166.71 REMARK 500 THR B 514 16.93 -145.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 223 LYS A 224 139.77 REMARK 500 ASP A 271 ALA A 272 -145.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1098 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1099 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B1062 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1063 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1064 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B1065 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B1066 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B1067 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B1068 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH B1069 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH B1070 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B1071 DISTANCE = 8.22 ANGSTROMS DBREF 7VOH A 1 528 PDB 7VOH 7VOH 1 528 DBREF 7VOH B 1 528 PDB 7VOH 7VOH 1 528 SEQRES 1 A 528 MET SER GLY LYS LEU PRO TRP TRP LYS GLY ALA VAL ILE SEQRES 2 A 528 TYR GLN ILE TYR PRO ARG SER PHE MET ASP SER ASN GLY SEQRES 3 A 528 ASP GLY ILE GLY ASP LEU PRO GLY ILE ALA GLN ARG LEU SEQRES 4 A 528 PRO HIS ILE ALA GLU LEU GLY ALA ASP ALA ILE TRP ILE SEQRES 5 A 528 SER PRO PHE PHE LYS SER PRO MET LYS ASP PHE GLY TYR SEQRES 6 A 528 ASP VAL SER ASP TYR CYS ASP VAL ASP PRO ILE PHE GLY SEQRES 7 A 528 THR LEU GLU ASP PHE ASP ALA VAL ILE ALA ARG SER HIS SEQRES 8 A 528 GLU LEU GLY LEU LYS VAL LEU ILE ASP GLN VAL TYR SER SEQRES 9 A 528 HIS THR SER ASP ASP HIS GLU TRP PHE ALA GLU SER ARG SEQRES 10 A 528 SER ASN ARG ASP ASN PRO LYS ALA GLU TRP TYR VAL TRP SEQRES 11 A 528 ALA ASP ALA LYS PRO ASP GLY SER PRO PRO SER ASN TRP SEQRES 12 A 528 GLN SER VAL PHE GLY GLY PRO ALA TRP THR TRP ASP ALA SEQRES 13 A 528 ARG ARG GLY GLN TYR TYR LEU HIS ASN PHE LEU SER SER SEQRES 14 A 528 GLN PRO GLN LEU ASN LEU HIS ASN ARG GLU ALA GLN GLN SEQRES 15 A 528 ALA VAL LEU ASP VAL MET ARG PHE TRP LEU GLU ARG GLY SEQRES 16 A 528 VAL ASP GLY PHE ARG ILE ASP ALA LEU ASN PHE ALA MET SEQRES 17 A 528 HIS ASP PRO GLN LEU ARG ASP ASN PRO PRO ALA PRO PRO SEQRES 18 A 528 THR ASP LYS GLN ARG THR ARG PRO PHE ASP PHE GLN LEU SEQRES 19 A 528 LYS THR TYR ASN GLN SER HIS ALA ASP ILE PRO ALA PHE SEQRES 20 A 528 ILE GLU ARG ILE ARG ALA LEU THR ASP GLU PHE ASP GLY SEQRES 21 A 528 ILE PHE THR VAL ALA GLU VAL GLY GLY ASP ASP ALA VAL SEQRES 22 A 528 ARG GLU MET LYS ALA PHE THR GLU GLY GLU THR HIS LEU SEQRES 23 A 528 ASN SER ALA TYR GLY PHE ASN PHE LEU TYR ALA GLU ALA SEQRES 24 A 528 LEU THR PRO GLN LEU VAL CYS SER ALA LEU ALA GLU TRP SEQRES 25 A 528 PRO GLU GLU PRO ASP LEU GLY TRP PRO SER TRP ALA PHE SEQRES 26 A 528 GLU ASN HIS ASP ALA PRO ARG ALA LEU SER ARG TRP CYS SEQRES 27 A 528 THR PRO GLU ASP ARG GLN ALA PHE ALA ARG LEU LYS THR SEQRES 28 A 528 LEU LEU LEU MET SER LEU ARG GLY ASN ALA ILE LEU TYR SEQRES 29 A 528 TYR GLY GLU GLU LEU GLY LEU THR GLN VAL ASP ILE PRO SEQRES 30 A 528 PHE ASP GLN LEU HIS ASP PRO GLU ALA ILE ALA ASN TRP SEQRES 31 A 528 PRO LEU THR LEU SER ARG ASP GLY ALA ARG THR PRO MET SEQRES 32 A 528 PRO TRP ASP ASP SER GLU CYS ALA GLY PHE GLY SER THR SEQRES 33 A 528 ALA PRO TRP LEU PRO VAL GLY ASP ASP ASN ARG PRO ARG SEQRES 34 A 528 SER VAL ALA ALA GLN LEU GLY ASP ALA ASN SER LEU LEU SEQRES 35 A 528 LYS PHE THR ARG GLN ALA ILE ALA LEU ARG LYS ALA ASN SEQRES 36 A 528 PRO ALA LEU HIS HIS GLY HIS VAL VAL GLU CYS ASN HIS SEQRES 37 A 528 ASP GLY ASP LEU LEU GLU LEU VAL ARG GLU ALA GLY GLY SEQRES 38 A 528 GLN ARG LEU ARG CYS ARG PHE ASN LEU GLY SER LYS PRO SEQRES 39 A 528 VAL GLU CYS ASP ASP CYS GLU GLY ARG THR LEU LEU ALA SEQRES 40 A 528 ILE ASN GLY ALA GLU PRO THR ALA LEU PRO PRO PHE ALA SEQRES 41 A 528 ALA ILE ILE LEU GLU THR ASP THR SEQRES 1 B 528 MET SER GLY LYS LEU PRO TRP TRP LYS GLY ALA VAL ILE SEQRES 2 B 528 TYR GLN ILE TYR PRO ARG SER PHE MET ASP SER ASN GLY SEQRES 3 B 528 ASP GLY ILE GLY ASP LEU PRO GLY ILE ALA GLN ARG LEU SEQRES 4 B 528 PRO HIS ILE ALA GLU LEU GLY ALA ASP ALA ILE TRP ILE SEQRES 5 B 528 SER PRO PHE PHE LYS SER PRO MET LYS ASP PHE GLY TYR SEQRES 6 B 528 ASP VAL SER ASP TYR CYS ASP VAL ASP PRO ILE PHE GLY SEQRES 7 B 528 THR LEU GLU ASP PHE ASP ALA VAL ILE ALA ARG SER HIS SEQRES 8 B 528 GLU LEU GLY LEU LYS VAL LEU ILE ASP GLN VAL TYR SER SEQRES 9 B 528 HIS THR SER ASP ASP HIS GLU TRP PHE ALA GLU SER ARG SEQRES 10 B 528 SER ASN ARG ASP ASN PRO LYS ALA GLU TRP TYR VAL TRP SEQRES 11 B 528 ALA ASP ALA LYS PRO ASP GLY SER PRO PRO SER ASN TRP SEQRES 12 B 528 GLN SER VAL PHE GLY GLY PRO ALA TRP THR TRP ASP ALA SEQRES 13 B 528 ARG ARG GLY GLN TYR TYR LEU HIS ASN PHE LEU SER SER SEQRES 14 B 528 GLN PRO GLN LEU ASN LEU HIS ASN ARG GLU ALA GLN GLN SEQRES 15 B 528 ALA VAL LEU ASP VAL MET ARG PHE TRP LEU GLU ARG GLY SEQRES 16 B 528 VAL ASP GLY PHE ARG ILE ASP ALA LEU ASN PHE ALA MET SEQRES 17 B 528 HIS ASP PRO GLN LEU ARG ASP ASN PRO PRO ALA PRO PRO SEQRES 18 B 528 THR ASP LYS GLN ARG THR ARG PRO PHE ASP PHE GLN LEU SEQRES 19 B 528 LYS THR TYR ASN GLN SER HIS ALA ASP ILE PRO ALA PHE SEQRES 20 B 528 ILE GLU ARG ILE ARG ALA LEU THR ASP GLU PHE ASP GLY SEQRES 21 B 528 ILE PHE THR VAL ALA GLU VAL GLY GLY ASP ASP ALA VAL SEQRES 22 B 528 ARG GLU MET LYS ALA PHE THR GLU GLY GLU THR HIS LEU SEQRES 23 B 528 ASN SER ALA TYR GLY PHE ASN PHE LEU TYR ALA GLU ALA SEQRES 24 B 528 LEU THR PRO GLN LEU VAL CYS SER ALA LEU ALA GLU TRP SEQRES 25 B 528 PRO GLU GLU PRO ASP LEU GLY TRP PRO SER TRP ALA PHE SEQRES 26 B 528 GLU ASN HIS ASP ALA PRO ARG ALA LEU SER ARG TRP CYS SEQRES 27 B 528 THR PRO GLU ASP ARG GLN ALA PHE ALA ARG LEU LYS THR SEQRES 28 B 528 LEU LEU LEU MET SER LEU ARG GLY ASN ALA ILE LEU TYR SEQRES 29 B 528 TYR GLY GLU GLU LEU GLY LEU THR GLN VAL ASP ILE PRO SEQRES 30 B 528 PHE ASP GLN LEU HIS ASP PRO GLU ALA ILE ALA ASN TRP SEQRES 31 B 528 PRO LEU THR LEU SER ARG ASP GLY ALA ARG THR PRO MET SEQRES 32 B 528 PRO TRP ASP ASP SER GLU CYS ALA GLY PHE GLY SER THR SEQRES 33 B 528 ALA PRO TRP LEU PRO VAL GLY ASP ASP ASN ARG PRO ARG SEQRES 34 B 528 SER VAL ALA ALA GLN LEU GLY ASP ALA ASN SER LEU LEU SEQRES 35 B 528 LYS PHE THR ARG GLN ALA ILE ALA LEU ARG LYS ALA ASN SEQRES 36 B 528 PRO ALA LEU HIS HIS GLY HIS VAL VAL GLU CYS ASN HIS SEQRES 37 B 528 ASP GLY ASP LEU LEU GLU LEU VAL ARG GLU ALA GLY GLY SEQRES 38 B 528 GLN ARG LEU ARG CYS ARG PHE ASN LEU GLY SER LYS PRO SEQRES 39 B 528 VAL GLU CYS ASP ASP CYS GLU GLY ARG THR LEU LEU ALA SEQRES 40 B 528 ILE ASN GLY ALA GLU PRO THR ALA LEU PRO PRO PHE ALA SEQRES 41 B 528 ALA ILE ILE LEU GLU THR ASP THR HET TRS A 601 8 HET TRS B 601 8 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 TRS 2(C4 H12 N O3 1+) FORMUL 5 HOH *770(H2 O) HELIX 1 AA1 ASP A 31 GLY A 46 1 16 HELIX 2 AA2 PRO A 75 GLY A 78 5 4 HELIX 3 AA3 THR A 79 LEU A 93 1 15 HELIX 4 AA4 HIS A 110 ARG A 117 1 8 HELIX 5 AA5 ASN A 177 GLU A 193 1 17 HELIX 6 AA6 ALA A 203 ALA A 207 5 5 HELIX 7 AA7 ARG A 228 GLN A 233 5 6 HELIX 8 AA8 ASP A 243 ASP A 256 1 14 HELIX 9 AA9 ASP A 271 PHE A 279 1 9 HELIX 10 AB1 THR A 301 GLU A 311 1 11 HELIX 11 AB2 ALA A 333 CYS A 338 1 6 HELIX 12 AB3 THR A 339 LEU A 357 1 19 HELIX 13 AB4 GLY A 366 GLY A 370 5 5 HELIX 14 AB5 ASP A 383 TRP A 390 1 8 HELIX 15 AB6 ARG A 396 ARG A 400 5 5 HELIX 16 AB7 ASN A 426 ARG A 429 5 4 HELIX 17 AB8 SER A 430 ASP A 437 1 8 HELIX 18 AB9 SER A 440 ASN A 455 1 16 HELIX 19 AC1 ASN A 455 HIS A 460 1 6 HELIX 20 AC2 TYR B 17 PHE B 21 5 5 HELIX 21 AC3 ASP B 31 LEU B 39 1 9 HELIX 22 AC4 LEU B 39 GLY B 46 1 8 HELIX 23 AC5 THR B 79 LEU B 93 1 15 HELIX 24 AC6 HIS B 110 ARG B 117 1 8 HELIX 25 AC7 ASN B 177 GLU B 193 1 17 HELIX 26 AC8 ALA B 203 ALA B 207 5 5 HELIX 27 AC9 ARG B 228 GLN B 233 5 6 HELIX 28 AD1 ASP B 243 ASP B 256 1 14 HELIX 29 AD2 ALA B 272 PHE B 279 1 8 HELIX 30 AD3 THR B 301 TRP B 312 1 12 HELIX 31 AD4 ARG B 332 ARG B 336 5 5 HELIX 32 AD5 ASP B 342 LEU B 357 1 16 HELIX 33 AD6 PRO B 377 LEU B 381 5 5 HELIX 34 AD7 ASP B 383 TRP B 390 1 8 HELIX 35 AD8 ARG B 396 ARG B 400 5 5 HELIX 36 AD9 ASN B 426 ARG B 429 5 4 HELIX 37 AE1 SER B 430 GLY B 436 1 7 HELIX 38 AE2 SER B 440 ALA B 454 1 15 HELIX 39 AE3 ASN B 455 GLY B 461 1 7 SHEET 1 AA1 9 VAL A 12 ILE A 16 0 SHEET 2 AA1 9 ALA A 49 ILE A 52 1 O TRP A 51 N ILE A 16 SHEET 3 AA1 9 LYS A 96 GLN A 101 1 O LEU A 98 N ILE A 50 SHEET 4 AA1 9 GLY A 198 ILE A 201 1 O ARG A 200 N GLN A 101 SHEET 5 AA1 9 PHE A 262 GLU A 266 1 O VAL A 264 N ILE A 201 SHEET 6 AA1 9 SER A 288 TYR A 290 1 O SER A 288 N THR A 263 SHEET 7 AA1 9 TRP A 320 TRP A 323 1 O SER A 322 N ALA A 289 SHEET 8 AA1 9 ASN A 360 TYR A 364 1 O ILE A 362 N TRP A 323 SHEET 9 AA1 9 VAL A 12 ILE A 16 1 N GLN A 15 O LEU A 363 SHEET 1 AA2 2 PHE A 56 LYS A 57 0 SHEET 2 AA2 2 ASP A 69 VAL A 73 -1 N ASP A 69 O LYS A 57 SHEET 1 AA3 3 TRP A 130 ALA A 131 0 SHEET 2 AA3 3 GLN A 160 LEU A 163 -1 O TYR A 161 N ALA A 131 SHEET 3 AA3 3 TRP A 152 ASP A 155 -1 N ASP A 155 O GLN A 160 SHEET 1 AA4 5 HIS A 462 ASP A 469 0 SHEET 2 AA4 5 LEU A 472 ALA A 479 -1 O VAL A 476 N GLU A 465 SHEET 3 AA4 5 GLN A 482 ASN A 489 -1 O CYS A 486 N LEU A 475 SHEET 4 AA4 5 ALA A 521 GLU A 525 -1 O LEU A 524 N ARG A 485 SHEET 5 AA4 5 ARG A 503 ILE A 508 -1 N LEU A 505 O ILE A 523 SHEET 1 AA5 2 VAL A 495 GLU A 496 0 SHEET 2 AA5 2 ALA A 515 LEU A 516 -1 O LEU A 516 N VAL A 495 SHEET 1 AA6 9 VAL B 12 ILE B 16 0 SHEET 2 AA6 9 ALA B 49 ILE B 52 1 O ALA B 49 N TYR B 14 SHEET 3 AA6 9 LYS B 96 GLN B 101 1 O LEU B 98 N ILE B 50 SHEET 4 AA6 9 GLY B 198 ILE B 201 1 O ARG B 200 N ILE B 99 SHEET 5 AA6 9 PHE B 262 GLU B 266 1 O VAL B 264 N PHE B 199 SHEET 6 AA6 9 SER B 288 TYR B 290 1 O TYR B 290 N ALA B 265 SHEET 7 AA6 9 TRP B 320 TRP B 323 1 O SER B 322 N ALA B 289 SHEET 8 AA6 9 ASN B 360 TYR B 364 1 O ASN B 360 N TRP B 323 SHEET 9 AA6 9 VAL B 12 ILE B 16 1 N ILE B 13 O LEU B 363 SHEET 1 AA7 2 PHE B 56 LYS B 57 0 SHEET 2 AA7 2 ASP B 69 VAL B 73 -1 N ASP B 69 O LYS B 57 SHEET 1 AA8 3 TRP B 130 ALA B 131 0 SHEET 2 AA8 3 GLN B 160 LEU B 163 -1 O TYR B 161 N ALA B 131 SHEET 3 AA8 3 TRP B 152 ASP B 155 -1 N ASP B 155 O GLN B 160 SHEET 1 AA9 5 HIS B 462 ASP B 469 0 SHEET 2 AA9 5 LEU B 472 ALA B 479 -1 O GLU B 474 N ASN B 467 SHEET 3 AA9 5 GLN B 482 ASN B 489 -1 O PHE B 488 N LEU B 473 SHEET 4 AA9 5 ALA B 521 LEU B 524 -1 O LEU B 524 N ARG B 485 SHEET 5 AA9 5 THR B 504 ILE B 508 -1 N LEU B 506 O ILE B 523 SSBOND 1 CYS A 306 CYS A 466 1555 1555 2.05 SSBOND 2 CYS B 306 CYS B 466 1555 1555 2.03 CISPEP 1 TRP A 390 PRO A 391 0 0.43 CISPEP 2 PRO B 221 THR B 222 0 5.86 CISPEP 3 TRP B 390 PRO B 391 0 5.17 CISPEP 4 GLY B 470 ASP B 471 0 -25.09 CRYST1 58.815 129.918 161.304 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017002 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006199 0.00000