HEADER TRANSFERASE 15-OCT-21 7VPC TITLE NERYL DIPHOSPHATE SYNTHASE FROM SOLANUM LYCOPERSICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NERYL-DIPHOSPHATE SYNTHASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIMETHYLALLYLCISTRANSFERASE CPT1, CHLOROPLASTIC, CIS- COMPND 5 PRENYLTRANSFERASE 1,SLCPT1; COMPND 6 EC: 2.5.1.28; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO, LYCOPERSICON ESCULENTUM; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 GENE: CPT1, NDPS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOPRENOID, NERYL DIPHOSPHATE, TOMATO, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.IMAIZUMI,S.MISAWA,K.TAKESHITA,N.SAKAI,M.YAMAMOTO,K.KATAOKA, AUTHOR 2 T.NAKAYAMA,S.TAKAHASHI,S.YAMASHITA REVDAT 4 23-OCT-24 7VPC 1 REMARK REVDAT 3 29-NOV-23 7VPC 1 REMARK REVDAT 2 17-AUG-22 7VPC 1 JRNL REVDAT 1 18-MAY-22 7VPC 0 JRNL AUTH R.KUTSUKAWA,R.IMAIZUMI,M.SUENAGA-HIROMORI,K.TAKESHITA, JRNL AUTH 2 N.SAKAI,S.MISAWA,M.YAMAMOTO,H.YAMAGUCHI,Y.MIYAGI-INOUE, JRNL AUTH 3 T.WAKI,K.KATAOKA,T.NAKAYAMA,S.YAMASHITA,S.TAKAHASHI JRNL TITL STRUCTURE-BASED ENGINEERING OF A SHORT-CHAIN JRNL TITL 2 CIS-PRENYLTRANSFERASE TO BIOSYNTHESIZE NONNATURAL JRNL TITL 3 ALL-CIS-POLYISOPRENOIDS: MOLECULAR MECHANISMS FOR PRIMER JRNL TITL 4 SUBSTRATE RECOGNITION AND ULTIMATE PRODUCT CHAIN-LENGTH JRNL TITL 5 DETERMINATION. JRNL REF FEBS J. V. 289 4602 2022 JRNL REFN ISSN 1742-464X JRNL PMID 35133719 JRNL DOI 10.1111/FEBS.16392 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2260 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.5360 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.5560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3819 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31000 REMARK 3 B22 (A**2) : 4.42000 REMARK 3 B33 (A**2) : -2.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3946 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3705 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5295 ; 1.509 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8622 ; 1.273 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 6.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;37.378 ;23.445 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 743 ;17.049 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 509 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4309 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 803 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1889 ; 3.695 ; 4.819 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1888 ; 3.694 ; 4.817 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2356 ; 5.347 ; 7.205 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2357 ; 5.347 ; 7.207 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2057 ; 4.731 ; 5.455 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2058 ; 4.729 ; 5.455 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2939 ; 7.242 ; 7.932 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4394 ; 9.711 ;57.276 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4374 ; 9.692 ;57.190 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7VPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300024751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83643 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.160 REMARK 200 R MERGE (I) : 0.32000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.99 REMARK 200 R MERGE FOR SHELL (I) : 1.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5HXT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, DL-MALIC ACID, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.32150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.73200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.32150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.73200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 THR A 43 REMARK 465 MET A 44 REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 LEU A 49 REMARK 465 ASN A 50 REMARK 465 LYS A 51 REMARK 465 ILE A 52 REMARK 465 GLU A 66 REMARK 465 ASP A 67 REMARK 465 ASN A 68 REMARK 465 ASP A 69 REMARK 465 ASN A 70 REMARK 465 ASP A 71 REMARK 465 LEU A 72 REMARK 465 ASP A 73 REMARK 465 GLU A 74 REMARK 465 GLU A 75 REMARK 465 GLY A 300 REMARK 465 HIS A 301 REMARK 465 THR A 302 REMARK 465 TYR A 303 REMARK 465 GLY B 42 REMARK 465 THR B 43 REMARK 465 MET B 44 REMARK 465 SER B 45 REMARK 465 ALA B 46 REMARK 465 ARG B 47 REMARK 465 GLY B 48 REMARK 465 LEU B 49 REMARK 465 ASN B 50 REMARK 465 LYS B 51 REMARK 465 GLU B 66 REMARK 465 ASP B 67 REMARK 465 ASN B 68 REMARK 465 ASP B 69 REMARK 465 ASN B 70 REMARK 465 ASP B 71 REMARK 465 LEU B 72 REMARK 465 ASP B 73 REMARK 465 GLU B 74 REMARK 465 GLU B 75 REMARK 465 ARG B 297 REMARK 465 PHE B 298 REMARK 465 GLY B 299 REMARK 465 GLY B 300 REMARK 465 HIS B 301 REMARK 465 THR B 302 REMARK 465 TYR B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 58 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 119.59 -161.16 REMARK 500 THR A 60 -122.64 -95.91 REMARK 500 GLU A 61 -102.57 69.09 REMARK 500 LYS A 62 123.33 94.14 REMARK 500 SER A 138 135.28 -38.15 REMARK 500 GLN A 254 61.27 -112.27 REMARK 500 PHE A 259 -88.65 -74.00 REMARK 500 LEU A 261 -59.94 -120.34 REMARK 500 SER B 53 115.63 66.76 REMARK 500 ASN B 57 50.07 -97.32 REMARK 500 GLN B 59 -71.39 -34.39 REMARK 500 THR B 60 75.93 37.66 REMARK 500 GLU B 61 57.62 -101.16 REMARK 500 LYS B 62 146.83 68.33 REMARK 500 GLN B 254 61.70 -114.15 REMARK 500 LEU B 261 -67.62 -127.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 610 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 611 DISTANCE = 7.24 ANGSTROMS DBREF 7VPC A 45 303 UNP C1K5M2 CPT1_SOLLC 45 303 DBREF 7VPC B 45 303 UNP C1K5M2 CPT1_SOLLC 45 303 SEQADV 7VPC GLY A 42 UNP C1K5M2 EXPRESSION TAG SEQADV 7VPC THR A 43 UNP C1K5M2 EXPRESSION TAG SEQADV 7VPC MET A 44 UNP C1K5M2 EXPRESSION TAG SEQADV 7VPC GLY B 42 UNP C1K5M2 EXPRESSION TAG SEQADV 7VPC THR B 43 UNP C1K5M2 EXPRESSION TAG SEQADV 7VPC MET B 44 UNP C1K5M2 EXPRESSION TAG SEQRES 1 A 262 GLY THR MET SER ALA ARG GLY LEU ASN LYS ILE SER CYS SEQRES 2 A 262 SER LEU ASN LEU GLN THR GLU LYS LEU CYS TYR GLU ASP SEQRES 3 A 262 ASN ASP ASN ASP LEU ASP GLU GLU LEU MET PRO LYS HIS SEQRES 4 A 262 ILE ALA LEU ILE MET ASP GLY ASN ARG ARG TRP ALA LYS SEQRES 5 A 262 ASP LYS GLY LEU GLU VAL TYR GLU GLY HIS LYS HIS ILE SEQRES 6 A 262 ILE PRO LYS LEU LYS GLU ILE CYS ASP ILE SER SER LYS SEQRES 7 A 262 LEU GLY ILE GLN ILE ILE THR ALA PHE ALA PHE SER THR SEQRES 8 A 262 GLU ASN TRP LYS ARG SER LYS GLU GLU VAL ASP PHE LEU SEQRES 9 A 262 LEU GLN MET PHE GLU GLU ILE TYR ASP GLU PHE SER ARG SEQRES 10 A 262 SER GLY VAL ARG VAL SER ILE ILE GLY CYS LYS SER ASP SEQRES 11 A 262 LEU PRO MET THR LEU GLN LYS CYS ILE ALA LEU THR GLU SEQRES 12 A 262 GLU THR THR LYS GLY ASN LYS GLY LEU HIS LEU VAL ILE SEQRES 13 A 262 ALA LEU ASN TYR GLY GLY TYR TYR ASP ILE LEU GLN ALA SEQRES 14 A 262 THR LYS SER ILE VAL ASN LYS ALA MET ASN GLY LEU LEU SEQRES 15 A 262 ASP VAL GLU ASP ILE ASN LYS ASN LEU PHE ASP GLN GLU SEQRES 16 A 262 LEU GLU SER LYS CYS PRO ASN PRO ASP LEU LEU ILE ARG SEQRES 17 A 262 THR GLY GLY GLU GLN ARG VAL SER ASN PHE LEU LEU TRP SEQRES 18 A 262 GLN LEU ALA TYR THR GLU PHE TYR PHE THR ASN THR LEU SEQRES 19 A 262 PHE PRO ASP PHE GLY GLU GLU ASP LEU LYS GLU ALA ILE SEQRES 20 A 262 MET ASN PHE GLN GLN ARG HIS ARG ARG PHE GLY GLY HIS SEQRES 21 A 262 THR TYR SEQRES 1 B 262 GLY THR MET SER ALA ARG GLY LEU ASN LYS ILE SER CYS SEQRES 2 B 262 SER LEU ASN LEU GLN THR GLU LYS LEU CYS TYR GLU ASP SEQRES 3 B 262 ASN ASP ASN ASP LEU ASP GLU GLU LEU MET PRO LYS HIS SEQRES 4 B 262 ILE ALA LEU ILE MET ASP GLY ASN ARG ARG TRP ALA LYS SEQRES 5 B 262 ASP LYS GLY LEU GLU VAL TYR GLU GLY HIS LYS HIS ILE SEQRES 6 B 262 ILE PRO LYS LEU LYS GLU ILE CYS ASP ILE SER SER LYS SEQRES 7 B 262 LEU GLY ILE GLN ILE ILE THR ALA PHE ALA PHE SER THR SEQRES 8 B 262 GLU ASN TRP LYS ARG SER LYS GLU GLU VAL ASP PHE LEU SEQRES 9 B 262 LEU GLN MET PHE GLU GLU ILE TYR ASP GLU PHE SER ARG SEQRES 10 B 262 SER GLY VAL ARG VAL SER ILE ILE GLY CYS LYS SER ASP SEQRES 11 B 262 LEU PRO MET THR LEU GLN LYS CYS ILE ALA LEU THR GLU SEQRES 12 B 262 GLU THR THR LYS GLY ASN LYS GLY LEU HIS LEU VAL ILE SEQRES 13 B 262 ALA LEU ASN TYR GLY GLY TYR TYR ASP ILE LEU GLN ALA SEQRES 14 B 262 THR LYS SER ILE VAL ASN LYS ALA MET ASN GLY LEU LEU SEQRES 15 B 262 ASP VAL GLU ASP ILE ASN LYS ASN LEU PHE ASP GLN GLU SEQRES 16 B 262 LEU GLU SER LYS CYS PRO ASN PRO ASP LEU LEU ILE ARG SEQRES 17 B 262 THR GLY GLY GLU GLN ARG VAL SER ASN PHE LEU LEU TRP SEQRES 18 B 262 GLN LEU ALA TYR THR GLU PHE TYR PHE THR ASN THR LEU SEQRES 19 B 262 PHE PRO ASP PHE GLY GLU GLU ASP LEU LYS GLU ALA ILE SEQRES 20 B 262 MET ASN PHE GLN GLN ARG HIS ARG ARG PHE GLY GLY HIS SEQRES 21 B 262 THR TYR HET EDO A 401 4 HET MLT A 402 9 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO B 401 4 HET EDO B 402 4 HET MLT B 403 9 HET EDO B 404 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM MLT D-MALATE HETSYN EDO ETHYLENE GLYCOL HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 EDO 8(C2 H6 O2) FORMUL 4 MLT 2(C4 H6 O5) FORMUL 13 HOH *197(H2 O) HELIX 1 AA1 GLY A 87 LYS A 95 1 9 HELIX 2 AA2 GLU A 98 LYS A 104 1 7 HELIX 3 AA3 HIS A 105 LEU A 120 1 16 HELIX 4 AA4 GLU A 133 ARG A 137 5 5 HELIX 5 AA5 SER A 138 PHE A 149 1 12 HELIX 6 AA6 GLU A 151 SER A 157 1 7 HELIX 7 AA7 CYS A 168 LEU A 172 5 5 HELIX 8 AA8 PRO A 173 LYS A 188 1 16 HELIX 9 AA9 GLY A 202 ASN A 220 1 19 HELIX 10 AB1 ASP A 224 ILE A 228 5 5 HELIX 11 AB2 ASN A 229 GLU A 236 1 8 HELIX 12 AB3 LEU A 261 ALA A 265 5 5 HELIX 13 AB4 LEU A 275 PHE A 279 5 5 HELIX 14 AB5 GLY A 280 GLY A 299 1 20 HELIX 15 AB6 GLY B 87 LYS B 93 1 7 HELIX 16 AB7 GLU B 98 LYS B 104 1 7 HELIX 17 AB8 HIS B 105 GLY B 121 1 17 HELIX 18 AB9 GLU B 133 ARG B 137 5 5 HELIX 19 AC1 SER B 138 PHE B 149 1 12 HELIX 20 AC2 GLU B 151 SER B 157 1 7 HELIX 21 AC3 CYS B 168 LEU B 172 5 5 HELIX 22 AC4 PRO B 173 LYS B 188 1 16 HELIX 23 AC5 GLY B 202 ASN B 220 1 19 HELIX 24 AC6 ASP B 224 ILE B 228 5 5 HELIX 25 AC7 ASN B 229 LEU B 237 1 9 HELIX 26 AC8 LEU B 261 ALA B 265 5 5 HELIX 27 AC9 LEU B 275 PHE B 279 5 5 HELIX 28 AD1 GLY B 280 ARG B 296 1 17 SHEET 1 AA1 6 ARG A 162 ILE A 166 0 SHEET 2 AA1 6 HIS A 194 TYR A 201 1 O LEU A 195 N ARG A 162 SHEET 3 AA1 6 ILE A 124 SER A 131 1 N ILE A 125 O VAL A 196 SHEET 4 AA1 6 HIS A 80 ILE A 84 1 N LEU A 83 O THR A 126 SHEET 5 AA1 6 LEU A 246 ARG A 249 1 O ILE A 248 N ALA A 82 SHEET 6 AA1 6 GLU A 268 PHE A 271 1 O GLU A 268 N LEU A 247 SHEET 1 AA2 6 ARG B 162 ILE B 166 0 SHEET 2 AA2 6 HIS B 194 TYR B 201 1 O ILE B 197 N SER B 164 SHEET 3 AA2 6 ILE B 124 SER B 131 1 N ILE B 125 O VAL B 196 SHEET 4 AA2 6 HIS B 80 ILE B 84 1 N LEU B 83 O THR B 126 SHEET 5 AA2 6 LEU B 246 ARG B 249 1 O ILE B 248 N ILE B 84 SHEET 6 AA2 6 GLU B 268 PHE B 271 1 O GLU B 268 N LEU B 247 SSBOND 1 CYS A 54 CYS B 168 1555 1555 2.11 SSBOND 2 CYS A 64 CYS A 241 1555 1555 2.06 SSBOND 3 CYS A 168 CYS B 54 1555 1555 2.05 SSBOND 4 CYS B 64 CYS B 241 1555 1555 2.07 CISPEP 1 CYS A 241 PRO A 242 0 1.42 CISPEP 2 CYS B 241 PRO B 242 0 7.21 CRYST1 98.643 49.464 119.494 90.00 91.21 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010138 0.000000 0.000213 0.00000 SCALE2 0.000000 0.020217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008370 0.00000