HEADER TRANSCRIPTION/INHIBITOR 22-OCT-21 7VRH TITLE CRYSTAL STRUCTURE OF BRD2-BD1 IN COMPLEX WITH GUANOSINE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: O27.1.1,REALLY INTERESTING NEW GENE 3 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD2, KIAA9001, RING3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BET FAMILY, BET INHIBITOR, BROMODOMAIN INHIBITOR, BRD2-BD1 INHIBITOR, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.PADMANABHAN,A.AROLE,P.DESHMUKH,S.ASHOK,S.MATHUR REVDAT 3 16-AUG-23 7VRH 1 JRNL REVDAT 2 02-AUG-23 7VRH 1 JRNL REVDAT 1 01-FEB-23 7VRH 0 JRNL AUTH A.H.AROLE,P.DESHMUKH,A.SRIDHAR,S.MATHUR,M.MAHALINGASWAMY, JRNL AUTH 2 H.SUBRAMANYA,N.DALAVAIKODIHALLI NANJAIAH,B.PADMANABHAN JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO PURINE-BASED DRUG JRNL TITL 2 MOLECULES IN HBRD2 DELINEATE A UNIQUE BINDING MODE OPENING JRNL TITL 3 NEW VISTAS IN THE DESIGN OF INHIBITORS OF THE BET FAMILY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 758 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37432115 JRNL DOI 10.1107/S2059798323005211 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18_3855: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 20793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3900 - 4.2100 0.99 2965 155 0.1588 0.2016 REMARK 3 2 4.2000 - 3.3400 1.00 2923 155 0.1637 0.2127 REMARK 3 3 3.3400 - 2.9200 0.99 2885 157 0.2047 0.2570 REMARK 3 4 2.9200 - 2.6500 0.99 2878 143 0.2177 0.2835 REMARK 3 5 2.6500 - 2.4600 0.99 2870 157 0.2095 0.2815 REMARK 3 6 2.4600 - 2.3200 0.96 2757 154 0.2383 0.2598 REMARK 3 7 2.3200 - 2.2000 0.86 2476 118 0.3596 0.3944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2860 REMARK 3 ANGLE : 0.940 3871 REMARK 3 CHIRALITY : 0.050 405 REMARK 3 PLANARITY : 0.006 512 REMARK 3 DIHEDRAL : 5.906 398 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5478 5.4366 81.9125 REMARK 3 T TENSOR REMARK 3 T11: 0.4529 T22: 0.6403 REMARK 3 T33: 0.6658 T12: 0.1296 REMARK 3 T13: 0.1214 T23: 0.2198 REMARK 3 L TENSOR REMARK 3 L11: 0.3468 L22: 0.2106 REMARK 3 L33: 0.0845 L12: 0.0164 REMARK 3 L13: 0.0815 L23: -0.0476 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: -0.5972 S13: -0.8496 REMARK 3 S21: 0.1808 S22: 0.0937 S23: 1.2224 REMARK 3 S31: -0.1440 S32: -0.0228 S33: 0.0064 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0783 14.9552 70.3618 REMARK 3 T TENSOR REMARK 3 T11: 0.3400 T22: 0.3099 REMARK 3 T33: 0.3732 T12: 0.0554 REMARK 3 T13: 0.0562 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.3745 L22: 0.2919 REMARK 3 L33: 0.2104 L12: -0.3343 REMARK 3 L13: 0.0522 L23: 0.1781 REMARK 3 S TENSOR REMARK 3 S11: -0.1146 S12: 0.0145 S13: 0.0349 REMARK 3 S21: -0.0332 S22: -0.0892 S23: 0.2921 REMARK 3 S31: -0.0624 S32: -0.3224 S33: 0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2608 7.2032 55.7343 REMARK 3 T TENSOR REMARK 3 T11: 0.4149 T22: 0.4186 REMARK 3 T33: 0.3801 T12: 0.0009 REMARK 3 T13: -0.0426 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 0.4633 L22: 0.8368 REMARK 3 L33: 0.4196 L12: 0.6223 REMARK 3 L13: -0.0719 L23: -0.3033 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: 0.4408 S13: -0.2353 REMARK 3 S21: -0.5937 S22: -0.3786 S23: 0.5330 REMARK 3 S31: 0.0077 S32: -0.3119 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5841 -0.6057 60.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.4685 T22: 0.3088 REMARK 3 T33: 0.4526 T12: 0.0283 REMARK 3 T13: -0.0106 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.4479 L22: 0.3669 REMARK 3 L33: 0.0753 L12: 0.1647 REMARK 3 L13: 0.1576 L23: 0.0506 REMARK 3 S TENSOR REMARK 3 S11: -0.3681 S12: 0.2251 S13: -0.7675 REMARK 3 S21: -0.2060 S22: -0.0545 S23: 0.1493 REMARK 3 S31: 0.9755 S32: 0.0301 S33: 0.0048 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2419 2.8173 69.6707 REMARK 3 T TENSOR REMARK 3 T11: 0.2864 T22: 0.3864 REMARK 3 T33: 0.5507 T12: 0.0147 REMARK 3 T13: 0.1585 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.1938 L22: 0.0630 REMARK 3 L33: 0.1352 L12: -0.0125 REMARK 3 L13: -0.1455 L23: 0.0771 REMARK 3 S TENSOR REMARK 3 S11: -0.4101 S12: -0.0470 S13: -0.5617 REMARK 3 S21: 0.3811 S22: 0.5007 S23: 0.9842 REMARK 3 S31: 0.0883 S32: -0.9964 S33: -0.0012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8538 -3.9585 76.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.6612 T22: 0.5468 REMARK 3 T33: 0.9671 T12: 0.0362 REMARK 3 T13: 0.3602 T23: 0.1634 REMARK 3 L TENSOR REMARK 3 L11: 0.0468 L22: 0.8699 REMARK 3 L33: 0.1402 L12: -0.1715 REMARK 3 L13: -0.0579 L23: 0.3403 REMARK 3 S TENSOR REMARK 3 S11: -0.3818 S12: -0.7241 S13: -1.1085 REMARK 3 S21: 1.5826 S22: 0.1973 S23: 1.1345 REMARK 3 S31: 0.6082 S32: -0.3299 S33: -0.0059 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7002 6.0645 67.2384 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.2335 REMARK 3 T33: 0.3077 T12: -0.0017 REMARK 3 T13: 0.0118 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.2512 L22: 2.6769 REMARK 3 L33: 1.0213 L12: -2.2600 REMARK 3 L13: 0.5550 L23: 0.5599 REMARK 3 S TENSOR REMARK 3 S11: -0.3036 S12: -0.3033 S13: 0.0109 REMARK 3 S21: -0.0143 S22: 0.1698 S23: 0.2092 REMARK 3 S31: 0.1919 S32: 0.0267 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7634 14.6721 71.9366 REMARK 3 T TENSOR REMARK 3 T11: 0.3542 T22: 0.3097 REMARK 3 T33: 0.3145 T12: 0.0352 REMARK 3 T13: 0.0499 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.7286 L22: 0.3918 REMARK 3 L33: 0.1398 L12: -0.2682 REMARK 3 L13: 0.1754 L23: -0.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: -0.2003 S13: 0.0839 REMARK 3 S21: 0.3202 S22: -0.0716 S23: 0.0988 REMARK 3 S31: -0.7014 S32: 0.3406 S33: -0.0017 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7802 2.9419 88.3981 REMARK 3 T TENSOR REMARK 3 T11: 0.8924 T22: 0.6109 REMARK 3 T33: 0.5664 T12: -0.0863 REMARK 3 T13: 0.0656 T23: 0.1678 REMARK 3 L TENSOR REMARK 3 L11: 0.1592 L22: 0.1686 REMARK 3 L33: 0.2568 L12: -0.1549 REMARK 3 L13: -0.2124 L23: 0.2148 REMARK 3 S TENSOR REMARK 3 S11: -0.1899 S12: -0.6112 S13: -1.1538 REMARK 3 S21: 0.7203 S22: -0.5467 S23: 0.5328 REMARK 3 S31: 0.7449 S32: -1.0104 S33: -0.0105 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0072 4.6830 85.5220 REMARK 3 T TENSOR REMARK 3 T11: 0.4973 T22: 0.4091 REMARK 3 T33: 0.3159 T12: 0.0550 REMARK 3 T13: -0.0584 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.1969 L22: 1.2564 REMARK 3 L33: 0.6807 L12: 0.5346 REMARK 3 L13: 0.5390 L23: -0.4265 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.5663 S13: 0.1143 REMARK 3 S21: 0.4206 S22: 0.1984 S23: -0.1646 REMARK 3 S31: 0.0415 S32: 0.1216 S33: -0.0009 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4681 9.8842 69.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.4604 T22: 0.6035 REMARK 3 T33: 0.5931 T12: 0.0978 REMARK 3 T13: 0.0402 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 0.4204 L22: 0.1294 REMARK 3 L33: 0.0880 L12: -0.0775 REMARK 3 L13: 0.1790 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.3427 S12: 0.5435 S13: 0.3267 REMARK 3 S21: -0.4055 S22: -1.0222 S23: -1.0574 REMARK 3 S31: 0.0989 S32: 1.3284 S33: -0.0037 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6788 13.2008 76.1591 REMARK 3 T TENSOR REMARK 3 T11: 0.3540 T22: 0.2691 REMARK 3 T33: 0.3737 T12: -0.0101 REMARK 3 T13: -0.0499 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.9240 L22: 2.3288 REMARK 3 L33: 2.1152 L12: -0.0090 REMARK 3 L13: 0.9859 L23: -0.7670 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: -0.2336 S13: 0.1582 REMARK 3 S21: 0.1793 S22: 0.1031 S23: -0.1830 REMARK 3 S31: -0.4310 S32: 0.0841 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2650 1.0678 76.7017 REMARK 3 T TENSOR REMARK 3 T11: 0.3619 T22: 0.2769 REMARK 3 T33: 0.3454 T12: -0.0266 REMARK 3 T13: -0.0136 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.3939 L22: 1.2659 REMARK 3 L33: 0.5062 L12: 0.1947 REMARK 3 L13: 0.3232 L23: -0.5481 REMARK 3 S TENSOR REMARK 3 S11: -0.1446 S12: 0.1569 S13: -0.3399 REMARK 3 S21: -0.0114 S22: 0.0493 S23: 0.1950 REMARK 3 S31: 0.2526 S32: -0.4117 S33: -0.0001 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7758 11.7823 92.0070 REMARK 3 T TENSOR REMARK 3 T11: 0.6786 T22: 0.7528 REMARK 3 T33: 0.6396 T12: 0.0819 REMARK 3 T13: 0.1523 T23: -0.1827 REMARK 3 L TENSOR REMARK 3 L11: 0.0181 L22: 0.0836 REMARK 3 L33: 0.0638 L12: -0.0116 REMARK 3 L13: 0.0299 L23: -0.0728 REMARK 3 S TENSOR REMARK 3 S11: 0.7453 S12: -0.2634 S13: 0.6955 REMARK 3 S21: 0.6274 S22: 0.1911 S23: 0.4932 REMARK 3 S31: -0.2394 S32: -0.1609 S33: -0.0024 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 76 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1724 34.0630 90.1320 REMARK 3 T TENSOR REMARK 3 T11: 0.6118 T22: 0.4763 REMARK 3 T33: 0.4914 T12: 0.0415 REMARK 3 T13: 0.0070 T23: 0.1093 REMARK 3 L TENSOR REMARK 3 L11: 0.1042 L22: 0.1448 REMARK 3 L33: 0.0631 L12: 0.1155 REMARK 3 L13: 0.0284 L23: -0.0089 REMARK 3 S TENSOR REMARK 3 S11: -0.6363 S12: 0.2084 S13: 1.0980 REMARK 3 S21: 0.3910 S22: 0.1736 S23: -0.2958 REMARK 3 S31: -1.5905 S32: 0.2353 S33: -0.0008 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 85 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7030 20.9007 88.0092 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.5095 REMARK 3 T33: 0.3657 T12: 0.0745 REMARK 3 T13: 0.1154 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.0144 L22: 0.2406 REMARK 3 L33: -0.0448 L12: 0.0888 REMARK 3 L13: -0.0145 L23: 0.1371 REMARK 3 S TENSOR REMARK 3 S11: -0.3647 S12: 0.5464 S13: 0.1277 REMARK 3 S21: -0.6664 S22: 0.4779 S23: 0.0608 REMARK 3 S31: -0.1026 S32: 0.7557 S33: 0.0123 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 99 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4296 6.7001 84.8052 REMARK 3 T TENSOR REMARK 3 T11: 0.6351 T22: 0.4592 REMARK 3 T33: 0.4765 T12: 0.0569 REMARK 3 T13: 0.0361 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 0.0867 L22: 0.2704 REMARK 3 L33: 0.1511 L12: -0.2744 REMARK 3 L13: -0.0426 L23: 0.0834 REMARK 3 S TENSOR REMARK 3 S11: -0.1860 S12: 0.0978 S13: -0.7119 REMARK 3 S21: 0.0160 S22: 0.0490 S23: -0.3351 REMARK 3 S31: 0.6088 S32: 0.0581 S33: 0.0006 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 113 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7416 9.0074 90.9891 REMARK 3 T TENSOR REMARK 3 T11: 0.4262 T22: 0.4595 REMARK 3 T33: 0.3790 T12: 0.0652 REMARK 3 T13: -0.0639 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.0149 L22: 0.3270 REMARK 3 L33: 0.1773 L12: 0.0268 REMARK 3 L13: -0.0694 L23: 0.0896 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.2454 S13: 0.1077 REMARK 3 S21: -0.7691 S22: 0.1664 S23: 0.6490 REMARK 3 S31: 0.2851 S32: -0.5254 S33: -0.0001 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 123 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8482 23.6327 84.0637 REMARK 3 T TENSOR REMARK 3 T11: 0.4671 T22: 0.4645 REMARK 3 T33: 0.3626 T12: -0.0091 REMARK 3 T13: -0.0014 T23: 0.0646 REMARK 3 L TENSOR REMARK 3 L11: 0.1113 L22: 0.1495 REMARK 3 L33: 0.0176 L12: 0.0264 REMARK 3 L13: -0.0121 L23: 0.0191 REMARK 3 S TENSOR REMARK 3 S11: -0.1248 S12: 0.6144 S13: 0.5854 REMARK 3 S21: -1.4542 S22: 0.0960 S23: 0.1667 REMARK 3 S31: 0.4934 S32: 0.0777 S33: -0.0013 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 132 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9327 20.9228 93.1602 REMARK 3 T TENSOR REMARK 3 T11: 0.3455 T22: 0.4279 REMARK 3 T33: 0.2822 T12: 0.0557 REMARK 3 T13: -0.0101 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.9288 L22: 0.5192 REMARK 3 L33: 2.1090 L12: 0.7701 REMARK 3 L13: -0.3542 L23: 0.0945 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: -0.0670 S13: 0.0331 REMARK 3 S21: -0.2846 S22: 0.2485 S23: 0.2278 REMARK 3 S31: -0.1447 S32: -0.2422 S33: 0.0001 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 156 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1474 3.4101 97.8515 REMARK 3 T TENSOR REMARK 3 T11: 0.5408 T22: 0.3559 REMARK 3 T33: 0.5957 T12: 0.1375 REMARK 3 T13: -0.0339 T23: -0.0570 REMARK 3 L TENSOR REMARK 3 L11: 0.2359 L22: 0.0556 REMARK 3 L33: 0.3139 L12: 0.1251 REMARK 3 L13: 0.0494 L23: 0.0449 REMARK 3 S TENSOR REMARK 3 S11: -0.1862 S12: 0.5650 S13: -0.9976 REMARK 3 S21: -0.6338 S22: -0.2163 S23: -0.6928 REMARK 3 S31: 0.6482 S32: 0.2784 S33: 0.0035 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 161 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0030 22.1732 97.8297 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.4706 REMARK 3 T33: 0.3184 T12: 0.0038 REMARK 3 T13: 0.0359 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.3085 L22: 1.0801 REMARK 3 L33: 2.0567 L12: 1.4817 REMARK 3 L13: -0.0188 L23: -0.2985 REMARK 3 S TENSOR REMARK 3 S11: -0.1889 S12: 0.1800 S13: 0.2518 REMARK 3 S21: 0.5188 S22: 0.2669 S23: -0.2634 REMARK 3 S31: -0.1131 S32: 0.4914 S33: -0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300025020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6JKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, 0.8M AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.54150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.73650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.54150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.73650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -14.71788 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 202.84275 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 ARG A 74 REMARK 465 LEU A 187 REMARK 465 VAL A 188 REMARK 465 VAL A 189 REMARK 465 THR A 190 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 GLY B 73 REMARK 465 ARG B 74 REMARK 465 VAL B 75 REMARK 465 GLU B 186 REMARK 465 LEU B 187 REMARK 465 VAL B 188 REMARK 465 VAL B 189 REMARK 465 THR B 190 REMARK 465 ILE B 191 REMARK 465 PRO B 192 REMARK 465 LYS B 193 REMARK 465 ASN B 194 REMARK 465 GLY C 73 REMARK 465 ARG C 74 REMARK 465 VAL C 75 REMARK 465 GLU C 183 REMARK 465 GLU C 184 REMARK 465 GLN C 185 REMARK 465 GLU C 186 REMARK 465 LEU C 187 REMARK 465 VAL C 188 REMARK 465 VAL C 189 REMARK 465 THR C 190 REMARK 465 ILE C 191 REMARK 465 PRO C 192 REMARK 465 LYS C 193 REMARK 465 ASN C 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 75 CG1 CG2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 GLN A 185 CG CD OE1 NE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 GLN B 185 CG CD OE1 NE2 REMARK 470 THR C 76 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 453 O HOH A 460 2.10 REMARK 500 NE2 GLN B 182 O HOH B 301 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 92 O TYR C 134 3545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 183 -145.04 75.65 REMARK 500 GLU B 183 -129.66 -71.34 REMARK 500 GLU B 184 -61.86 -155.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 7VRH A 73 194 UNP P25440 BRD2_HUMAN 73 194 DBREF 7VRH B 73 194 UNP P25440 BRD2_HUMAN 73 194 DBREF 7VRH C 73 194 UNP P25440 BRD2_HUMAN 73 194 SEQRES 1 A 122 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 2 A 122 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 3 A 122 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 4 A 122 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 5 A 122 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 6 A 122 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 7 A 122 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 8 A 122 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 9 A 122 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 10 A 122 THR ILE PRO LYS ASN SEQRES 1 B 122 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 2 B 122 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 3 B 122 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 4 B 122 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 5 B 122 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 6 B 122 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 7 B 122 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 8 B 122 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 9 B 122 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 10 B 122 THR ILE PRO LYS ASN SEQRES 1 C 122 GLY ARG VAL THR ASN GLN LEU GLN TYR LEU HIS LYS VAL SEQRES 2 C 122 VAL MET LYS ALA LEU TRP LYS HIS GLN PHE ALA TRP PRO SEQRES 3 C 122 PHE ARG GLN PRO VAL ASP ALA VAL LYS LEU GLY LEU PRO SEQRES 4 C 122 ASP TYR HIS LYS ILE ILE LYS GLN PRO MET ASP MET GLY SEQRES 5 C 122 THR ILE LYS ARG ARG LEU GLU ASN ASN TYR TYR TRP ALA SEQRES 6 C 122 ALA SER GLU CYS MET GLN ASP PHE ASN THR MET PHE THR SEQRES 7 C 122 ASN CYS TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL SEQRES 8 C 122 LEU MET ALA GLN THR LEU GLU LYS ILE PHE LEU GLN LYS SEQRES 9 C 122 VAL ALA SER MET PRO GLN GLU GLU GLN GLU LEU VAL VAL SEQRES 10 C 122 THR ILE PRO LYS ASN HET AC2 A 301 16 HET AC2 A 302 32 HET DTT B 201 8 HET SO4 C 201 5 HETNAM AC2 9-HYROXYETHOXYMETHYLGUANINE HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM SO4 SULFATE ION HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 4 AC2 2(C8 H11 N5 O3) FORMUL 6 DTT C4 H10 O2 S2 FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *160(H2 O) HELIX 1 AA1 THR A 76 VAL A 85 1 10 HELIX 2 AA2 VAL A 85 LYS A 92 1 8 HELIX 3 AA3 ALA A 96 ARG A 100 5 5 HELIX 4 AA4 ASP A 104 GLY A 109 1 6 HELIX 5 AA5 ASP A 112 ILE A 117 1 6 HELIX 6 AA6 ASP A 122 ASN A 132 1 11 HELIX 7 AA7 ALA A 137 ASN A 156 1 20 HELIX 8 AA8 ASP A 160 ALA A 178 1 19 HELIX 9 AA9 ASN B 77 VAL B 85 1 9 HELIX 10 AB1 VAL B 85 HIS B 93 1 9 HELIX 11 AB2 ALA B 96 ARG B 100 5 5 HELIX 12 AB3 ASP B 112 ILE B 117 1 6 HELIX 13 AB4 ASP B 122 ASN B 132 1 11 HELIX 14 AB5 ALA B 137 ASN B 156 1 20 HELIX 15 AB6 ASP B 160 SER B 179 1 20 HELIX 16 AB7 ASN C 77 VAL C 85 1 9 HELIX 17 AB8 VAL C 85 HIS C 93 1 9 HELIX 18 AB9 GLN C 94 ARG C 100 5 7 HELIX 19 AC1 ASP C 112 ILE C 117 1 6 HELIX 20 AC2 ASP C 122 ASN C 132 1 11 HELIX 21 AC3 ALA C 137 ASN C 156 1 20 HELIX 22 AC4 ASP C 160 SER C 179 1 20 CRYST1 113.083 55.473 67.792 90.00 94.15 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008843 0.000000 0.000641 0.00000 SCALE2 0.000000 0.018027 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014790 0.00000