HEADER TRANSCRIPTION/INHIBITOR 23-OCT-21 7VRO TITLE CRYSTAL STRUCTURE OF BRD2-BD1 IN COMPLEX WITH PURINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BET FAMILY, BET INHIBITOR, BROMODOMAIN INHIBITOR, BRD2-BD1 INHIBITOR, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.PADMANABHAN,A.AROLE,P.DESHMUKH,S.ASHOK,S.MATHUR REVDAT 4 29-NOV-23 7VRO 1 REMARK REVDAT 3 16-AUG-23 7VRO 1 JRNL REVDAT 2 02-AUG-23 7VRO 1 JRNL REVDAT 1 01-FEB-23 7VRO 0 JRNL AUTH A.H.AROLE,P.DESHMUKH,A.SRIDHAR,S.MATHUR,M.MAHALINGASWAMY, JRNL AUTH 2 H.SUBRAMANYA,N.DALAVAIKODIHALLI NANJAIAH,B.PADMANABHAN JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO PURINE-BASED DRUG JRNL TITL 2 MOLECULES IN HBRD2 DELINEATE A UNIQUE BINDING MODE OPENING JRNL TITL 3 NEW VISTAS IN THE DESIGN OF INHIBITORS OF THE BET FAMILY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 758 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37432115 JRNL DOI 10.1107/S2059798323005211 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18_3855: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3300 - 4.2700 1.00 2872 151 0.1652 0.2159 REMARK 3 2 4.2700 - 3.3900 1.00 2832 150 0.1518 0.1993 REMARK 3 3 3.3900 - 2.9600 1.00 2812 146 0.1913 0.2807 REMARK 3 4 2.9600 - 2.6900 1.00 2809 151 0.1967 0.2454 REMARK 3 5 2.6900 - 2.5000 1.00 2773 141 0.1982 0.2720 REMARK 3 6 2.5000 - 2.3500 0.97 2717 141 0.1870 0.2453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2824 REMARK 3 ANGLE : 0.809 3838 REMARK 3 CHIRALITY : 0.045 397 REMARK 3 PLANARITY : 0.005 538 REMARK 3 DIHEDRAL : 4.595 387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 161 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5637 22.2996 97.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.4517 REMARK 3 T33: 0.2845 T12: 0.0335 REMARK 3 T13: 0.0070 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.2837 L22: 0.8922 REMARK 3 L33: 3.1503 L12: 1.3581 REMARK 3 L13: -0.1508 L23: -0.5750 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: 0.0728 S13: 0.1902 REMARK 3 S21: 0.0460 S22: 0.1207 S23: -0.0011 REMARK 3 S31: -0.2758 S32: 0.2621 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2399 10.3906 75.9171 REMARK 3 T TENSOR REMARK 3 T11: 0.3536 T22: 0.3597 REMARK 3 T33: 0.4861 T12: 0.0164 REMARK 3 T13: 0.1299 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 1.1274 L22: 0.5951 REMARK 3 L33: 0.4652 L12: -0.2569 REMARK 3 L13: 0.3767 L23: 0.2523 REMARK 3 S TENSOR REMARK 3 S11: 0.2361 S12: -0.4521 S13: -0.2184 REMARK 3 S21: 0.3714 S22: -0.1506 S23: 0.9049 REMARK 3 S31: -0.0865 S32: 0.2155 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6334 7.3541 55.5985 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.5437 REMARK 3 T33: 0.4383 T12: 0.0626 REMARK 3 T13: -0.0489 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 0.2028 L22: 0.2201 REMARK 3 L33: 0.3253 L12: 0.2265 REMARK 3 L13: 0.0147 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.2693 S12: 0.8538 S13: -0.1443 REMARK 3 S21: -0.6761 S22: -0.7340 S23: 0.5317 REMARK 3 S31: -0.2244 S32: -0.0973 S33: -0.0014 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4972 2.6785 67.2918 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.2656 REMARK 3 T33: 0.4096 T12: 0.0043 REMARK 3 T13: 0.0073 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.2956 L22: 2.6118 REMARK 3 L33: 2.2035 L12: -1.6117 REMARK 3 L13: 0.9637 L23: 1.1618 REMARK 3 S TENSOR REMARK 3 S11: -0.1221 S12: -0.2673 S13: -0.2937 REMARK 3 S21: 0.1001 S22: -0.0552 S23: 0.4113 REMARK 3 S31: 0.1536 S32: -0.2033 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4276 13.4636 74.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.3904 T22: 0.2809 REMARK 3 T33: 0.3499 T12: 0.0371 REMARK 3 T13: 0.0192 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.8867 L22: 1.0284 REMARK 3 L33: 0.4617 L12: -0.1384 REMARK 3 L13: 0.6329 L23: 0.3512 REMARK 3 S TENSOR REMARK 3 S11: -0.0987 S12: -0.2472 S13: -0.0573 REMARK 3 S21: 0.4661 S22: 0.0563 S23: -0.0511 REMARK 3 S31: -0.3390 S32: 0.0608 S33: -0.0038 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6842 10.2773 91.8531 REMARK 3 T TENSOR REMARK 3 T11: 0.6706 T22: 0.6379 REMARK 3 T33: 0.2996 T12: -0.0288 REMARK 3 T13: -0.0333 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8810 L22: 0.3005 REMARK 3 L33: 0.0351 L12: -0.2831 REMARK 3 L13: 0.0809 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: -0.9805 S13: 0.7978 REMARK 3 S21: 1.3016 S22: -0.0747 S23: -0.2058 REMARK 3 S31: 0.1830 S32: -0.9666 S33: 0.0015 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1215 3.5101 85.7557 REMARK 3 T TENSOR REMARK 3 T11: 0.5002 T22: 0.2959 REMARK 3 T33: 0.2905 T12: 0.0549 REMARK 3 T13: -0.0461 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 0.1401 L22: 0.0417 REMARK 3 L33: 0.0318 L12: -0.0726 REMARK 3 L13: 0.0796 L23: -0.0428 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: 0.0721 S13: 0.2331 REMARK 3 S21: 0.7869 S22: 0.2640 S23: -0.2319 REMARK 3 S31: 0.5357 S32: 0.7473 S33: -0.0022 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1717 -0.5729 77.8828 REMARK 3 T TENSOR REMARK 3 T11: 0.3387 T22: 0.3374 REMARK 3 T33: 0.3131 T12: 0.0193 REMARK 3 T13: -0.0726 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.3222 L22: 0.0822 REMARK 3 L33: 0.0785 L12: 0.1677 REMARK 3 L13: 0.0781 L23: -0.0244 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.1847 S13: 0.2534 REMARK 3 S21: -0.5273 S22: -0.2783 S23: -0.4692 REMARK 3 S31: 0.4547 S32: 0.6968 S33: 0.0006 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5264 13.0301 69.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.3770 T22: 0.3914 REMARK 3 T33: 0.4603 T12: -0.0368 REMARK 3 T13: -0.0020 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.3111 L22: 0.9311 REMARK 3 L33: 1.0462 L12: 0.3471 REMARK 3 L13: 0.3744 L23: 0.0806 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: 0.0124 S13: 0.5000 REMARK 3 S21: -0.0247 S22: -0.1941 S23: -0.4455 REMARK 3 S31: -0.4418 S32: 0.8851 S33: -0.0008 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7366 13.9240 85.9335 REMARK 3 T TENSOR REMARK 3 T11: 0.5922 T22: 0.4015 REMARK 3 T33: 0.3521 T12: -0.0440 REMARK 3 T13: -0.1926 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.5227 L22: 0.5128 REMARK 3 L33: 0.4408 L12: -0.0509 REMARK 3 L13: -0.2864 L23: -0.0456 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: -0.3417 S13: 0.1899 REMARK 3 S21: 0.2921 S22: 0.3437 S23: -1.0310 REMARK 3 S31: -0.8889 S32: 0.5871 S33: 0.0092 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5763 13.7523 77.9629 REMARK 3 T TENSOR REMARK 3 T11: 0.3815 T22: 0.2937 REMARK 3 T33: 0.3572 T12: 0.0128 REMARK 3 T13: -0.0287 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.7569 L22: 1.6342 REMARK 3 L33: 0.8816 L12: -0.3043 REMARK 3 L13: 0.5255 L23: -1.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.2400 S13: 0.1615 REMARK 3 S21: 0.3864 S22: 0.1794 S23: -0.1221 REMARK 3 S31: -0.1368 S32: -0.2026 S33: 0.0008 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9305 2.1026 61.5067 REMARK 3 T TENSOR REMARK 3 T11: 0.3607 T22: 0.2889 REMARK 3 T33: 0.2880 T12: 0.0320 REMARK 3 T13: 0.0456 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0538 L22: 0.0913 REMARK 3 L33: 0.0197 L12: -0.0146 REMARK 3 L13: -0.0260 L23: -0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.2858 S12: 0.3392 S13: -0.4204 REMARK 3 S21: -0.5858 S22: -0.4249 S23: -0.3393 REMARK 3 S31: -0.0255 S32: 0.6288 S33: 0.0010 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4433 2.2312 78.5125 REMARK 3 T TENSOR REMARK 3 T11: 0.3482 T22: 0.3087 REMARK 3 T33: 0.2927 T12: 0.0083 REMARK 3 T13: 0.0244 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.6075 L22: 1.8901 REMARK 3 L33: 1.3801 L12: 0.2221 REMARK 3 L13: 0.9361 L23: -1.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: -0.0803 S13: -0.4726 REMARK 3 S21: 0.3762 S22: -0.1953 S23: 0.2805 REMARK 3 S31: 0.0129 S32: -0.5971 S33: -0.0014 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 76 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7553 34.2454 89.8745 REMARK 3 T TENSOR REMARK 3 T11: 0.7047 T22: 0.5005 REMARK 3 T33: 0.4086 T12: 0.0203 REMARK 3 T13: -0.0343 T23: 0.0781 REMARK 3 L TENSOR REMARK 3 L11: 0.1396 L22: 0.0968 REMARK 3 L33: 0.0094 L12: 0.0894 REMARK 3 L13: 0.0124 L23: -0.0483 REMARK 3 S TENSOR REMARK 3 S11: -0.2434 S12: 0.6786 S13: 0.9096 REMARK 3 S21: -0.2307 S22: -0.1250 S23: -0.6598 REMARK 3 S31: -1.2637 S32: -0.4196 S33: -0.0005 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 85 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6066 20.5720 87.8529 REMARK 3 T TENSOR REMARK 3 T11: 0.3277 T22: 0.4370 REMARK 3 T33: 0.3943 T12: 0.0098 REMARK 3 T13: 0.0728 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.1785 L22: 0.0840 REMARK 3 L33: 0.1975 L12: 0.1687 REMARK 3 L13: -0.1086 L23: -0.0891 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.3560 S13: 0.1900 REMARK 3 S21: -0.6555 S22: 0.0645 S23: -0.7019 REMARK 3 S31: -0.0039 S32: 0.4246 S33: -0.0003 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6336 6.0762 84.3504 REMARK 3 T TENSOR REMARK 3 T11: 0.8462 T22: 0.5350 REMARK 3 T33: 0.4602 T12: -0.0745 REMARK 3 T13: 0.1271 T23: -0.1122 REMARK 3 L TENSOR REMARK 3 L11: 0.3003 L22: 0.3041 REMARK 3 L33: 0.1766 L12: -0.2736 REMARK 3 L13: 0.0177 L23: 0.1183 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -0.0250 S13: -0.5609 REMARK 3 S21: -0.3824 S22: -0.3727 S23: -0.7253 REMARK 3 S31: 1.1627 S32: 0.4688 S33: 0.0010 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 113 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3416 19.4963 87.4205 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.4874 REMARK 3 T33: 0.3882 T12: -0.0264 REMARK 3 T13: -0.0066 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.7532 L22: 0.7674 REMARK 3 L33: 2.1931 L12: -0.4721 REMARK 3 L13: 1.0480 L23: 0.0691 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: 0.0887 S13: 0.0071 REMARK 3 S21: -0.3155 S22: 0.0661 S23: 0.4141 REMARK 3 S31: -0.1225 S32: -0.1672 S33: -0.0002 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 138 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9749 15.1511 95.8087 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.4151 REMARK 3 T33: 0.2780 T12: -0.0056 REMARK 3 T13: 0.0073 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.6618 L22: 1.2469 REMARK 3 L33: 2.9003 L12: 1.4302 REMARK 3 L13: -0.1526 L23: -0.4037 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.0982 S13: -0.0806 REMARK 3 S21: -0.3294 S22: 0.0696 S23: 0.0539 REMARK 3 S31: 0.0367 S32: -0.0398 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300025267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54056 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17885 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 31.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6JKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, 0.1M MES, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.06450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.74450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.06450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.74450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -13.73485 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 202.51177 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 69 REMARK 465 SER A 70 REMARK 465 HIS A 71 REMARK 465 MET A 72 REMARK 465 GLY A 73 REMARK 465 GLU A 183 REMARK 465 GLU A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 465 LEU A 187 REMARK 465 VAL A 188 REMARK 465 VAL A 189 REMARK 465 THR A 190 REMARK 465 ILE A 191 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 465 GLY B 69 REMARK 465 SER B 70 REMARK 465 HIS B 71 REMARK 465 MET B 72 REMARK 465 GLY B 73 REMARK 465 ARG B 74 REMARK 465 VAL B 75 REMARK 465 GLU B 183 REMARK 465 GLU B 184 REMARK 465 GLN B 185 REMARK 465 GLU B 186 REMARK 465 LEU B 187 REMARK 465 VAL B 188 REMARK 465 VAL B 189 REMARK 465 THR B 190 REMARK 465 ILE B 191 REMARK 465 PRO B 192 REMARK 465 LYS B 193 REMARK 465 ASN B 194 REMARK 465 GLY C 69 REMARK 465 SER C 70 REMARK 465 HIS C 71 REMARK 465 MET C 72 REMARK 465 GLY C 73 REMARK 465 ARG C 74 REMARK 465 VAL C 75 REMARK 465 GLU C 183 REMARK 465 GLU C 184 REMARK 465 GLN C 185 REMARK 465 GLU C 186 REMARK 465 LEU C 187 REMARK 465 VAL C 188 REMARK 465 VAL C 189 REMARK 465 THR C 190 REMARK 465 ILE C 191 REMARK 465 PRO C 192 REMARK 465 LYS C 193 REMARK 465 ASN C 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 75 CG1 CG2 REMARK 470 LYS B 84 CG CD CE NZ REMARK 470 LYS B 88 CG CD CE NZ REMARK 470 THR C 76 OG1 CG2 REMARK 470 LYS C 107 CG CD CE NZ REMARK 470 LYS C 157 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 140 O HOH B 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 372 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 373 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 374 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 375 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH B 379 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 380 DISTANCE = 10.62 ANGSTROMS DBREF 7VRO A 73 194 UNP P25440 BRD2_HUMAN 73 194 DBREF 7VRO B 73 194 UNP P25440 BRD2_HUMAN 73 194 DBREF 7VRO C 73 194 UNP P25440 BRD2_HUMAN 73 194 SEQADV 7VRO GLY A 69 UNP P25440 EXPRESSION TAG SEQADV 7VRO SER A 70 UNP P25440 EXPRESSION TAG SEQADV 7VRO HIS A 71 UNP P25440 EXPRESSION TAG SEQADV 7VRO MET A 72 UNP P25440 EXPRESSION TAG SEQADV 7VRO GLY B 69 UNP P25440 EXPRESSION TAG SEQADV 7VRO SER B 70 UNP P25440 EXPRESSION TAG SEQADV 7VRO HIS B 71 UNP P25440 EXPRESSION TAG SEQADV 7VRO MET B 72 UNP P25440 EXPRESSION TAG SEQADV 7VRO GLY C 69 UNP P25440 EXPRESSION TAG SEQADV 7VRO SER C 70 UNP P25440 EXPRESSION TAG SEQADV 7VRO HIS C 71 UNP P25440 EXPRESSION TAG SEQADV 7VRO MET C 72 UNP P25440 EXPRESSION TAG SEQRES 1 A 126 GLY SER HIS MET GLY ARG VAL THR ASN GLN LEU GLN TYR SEQRES 2 A 126 LEU HIS LYS VAL VAL MET LYS ALA LEU TRP LYS HIS GLN SEQRES 3 A 126 PHE ALA TRP PRO PHE ARG GLN PRO VAL ASP ALA VAL LYS SEQRES 4 A 126 LEU GLY LEU PRO ASP TYR HIS LYS ILE ILE LYS GLN PRO SEQRES 5 A 126 MET ASP MET GLY THR ILE LYS ARG ARG LEU GLU ASN ASN SEQRES 6 A 126 TYR TYR TRP ALA ALA SER GLU CYS MET GLN ASP PHE ASN SEQRES 7 A 126 THR MET PHE THR ASN CYS TYR ILE TYR ASN LYS PRO THR SEQRES 8 A 126 ASP ASP ILE VAL LEU MET ALA GLN THR LEU GLU LYS ILE SEQRES 9 A 126 PHE LEU GLN LYS VAL ALA SER MET PRO GLN GLU GLU GLN SEQRES 10 A 126 GLU LEU VAL VAL THR ILE PRO LYS ASN SEQRES 1 B 126 GLY SER HIS MET GLY ARG VAL THR ASN GLN LEU GLN TYR SEQRES 2 B 126 LEU HIS LYS VAL VAL MET LYS ALA LEU TRP LYS HIS GLN SEQRES 3 B 126 PHE ALA TRP PRO PHE ARG GLN PRO VAL ASP ALA VAL LYS SEQRES 4 B 126 LEU GLY LEU PRO ASP TYR HIS LYS ILE ILE LYS GLN PRO SEQRES 5 B 126 MET ASP MET GLY THR ILE LYS ARG ARG LEU GLU ASN ASN SEQRES 6 B 126 TYR TYR TRP ALA ALA SER GLU CYS MET GLN ASP PHE ASN SEQRES 7 B 126 THR MET PHE THR ASN CYS TYR ILE TYR ASN LYS PRO THR SEQRES 8 B 126 ASP ASP ILE VAL LEU MET ALA GLN THR LEU GLU LYS ILE SEQRES 9 B 126 PHE LEU GLN LYS VAL ALA SER MET PRO GLN GLU GLU GLN SEQRES 10 B 126 GLU LEU VAL VAL THR ILE PRO LYS ASN SEQRES 1 C 126 GLY SER HIS MET GLY ARG VAL THR ASN GLN LEU GLN TYR SEQRES 2 C 126 LEU HIS LYS VAL VAL MET LYS ALA LEU TRP LYS HIS GLN SEQRES 3 C 126 PHE ALA TRP PRO PHE ARG GLN PRO VAL ASP ALA VAL LYS SEQRES 4 C 126 LEU GLY LEU PRO ASP TYR HIS LYS ILE ILE LYS GLN PRO SEQRES 5 C 126 MET ASP MET GLY THR ILE LYS ARG ARG LEU GLU ASN ASN SEQRES 6 C 126 TYR TYR TRP ALA ALA SER GLU CYS MET GLN ASP PHE ASN SEQRES 7 C 126 THR MET PHE THR ASN CYS TYR ILE TYR ASN LYS PRO THR SEQRES 8 C 126 ASP ASP ILE VAL LEU MET ALA GLN THR LEU GLU LYS ILE SEQRES 9 C 126 PHE LEU GLN LYS VAL ALA SER MET PRO GLN GLU GLU GLN SEQRES 10 C 126 GLU LEU VAL VAL THR ILE PRO LYS ASN HET 37T A 201 13 HET 37T A 202 13 HET SO4 A 203 5 HET SO4 A 204 5 HET 37T B 201 13 HET SO4 B 202 5 HET SO4 B 203 5 HET 37T C 201 13 HETNAM 37T THEOBROMINE HETNAM SO4 SULFATE ION HETSYN 37T 3,7-DIMETHYLXANTHINE; 3,7-DIMETHYLPURINE-2,6-DIONE FORMUL 4 37T 4(C7 H8 N4 O2) FORMUL 6 SO4 4(O4 S 2-) FORMUL 12 HOH *210(H2 O) HELIX 1 AA1 THR A 76 VAL A 85 1 10 HELIX 2 AA2 VAL A 85 LYS A 92 1 8 HELIX 3 AA3 ALA A 96 ARG A 100 5 5 HELIX 4 AA4 ASP A 104 GLY A 109 1 6 HELIX 5 AA5 ASP A 112 ILE A 117 1 6 HELIX 6 AA6 ASP A 122 ASN A 132 1 11 HELIX 7 AA7 ALA A 137 ASN A 156 1 20 HELIX 8 AA8 ASP A 160 ALA A 178 1 19 HELIX 9 AA9 ASN B 77 VAL B 85 1 9 HELIX 10 AB1 VAL B 85 LYS B 92 1 8 HELIX 11 AB2 ALA B 96 ARG B 100 5 5 HELIX 12 AB3 ASP B 112 ILE B 117 1 6 HELIX 13 AB4 ASP B 122 GLU B 131 1 10 HELIX 14 AB5 ALA B 137 ASN B 156 1 20 HELIX 15 AB6 ASP B 160 SER B 179 1 20 HELIX 16 AB7 ASN C 77 VAL C 85 1 9 HELIX 17 AB8 VAL C 85 HIS C 93 1 9 HELIX 18 AB9 ALA C 96 ARG C 100 5 5 HELIX 19 AC1 ASP C 112 ILE C 117 1 6 HELIX 20 AC2 ASP C 122 ASN C 132 1 11 HELIX 21 AC3 ALA C 137 ASN C 156 1 20 HELIX 22 AC4 ASP C 160 SER C 179 1 20 CRYST1 114.129 55.489 67.659 90.00 93.88 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008762 0.000000 0.000595 0.00000 SCALE2 0.000000 0.018022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014814 0.00000