HEADER VIRAL PROTEIN 26-OCT-21 7VS8 TITLE CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS GI.9 CAPSID PROTEIN IN TITLE 2 COMPLEX WITH LEWIS B ANTIGEN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CAPSID PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GI/VANCOUVER730/2004/CAN; SOURCE 3 ORGANISM_TAXID: 999890; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS NOROVIRUS, P-DOMAIN, CAPSID, HISTO BLOOD GROUP ANTIGEN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MURAYAMA,M.KATO-MURAYAMA,M.SHIROUZU REVDAT 3 29-NOV-23 7VS8 1 REMARK REVDAT 2 07-SEP-22 7VS8 1 SOURCE REVDAT 1 31-AUG-22 7VS8 0 JRNL AUTH T.KIMURA-SOMEYA,M.KATO-MURAYAMA,K.KATSURA,N.SAKAI, JRNL AUTH 2 K.MURAYAMA,K.HANADA,M.SHIROUZU,Y.SOMEYA JRNL TITL LEWIS FUCOSE IS A KEY MOIETY FOR THE RECOGNITION OF JRNL TITL 2 HISTO-BLOOD GROUP ANTIGENS BY GI.9 NOROVIRUS, AS REVEALED BY JRNL TITL 3 STRUCTURAL ANALYSIS. JRNL REF FEBS OPEN BIO V. 12 560 2022 JRNL REFN ESSN 2211-5463 JRNL PMID 35038379 JRNL DOI 10.1002/2211-5463.13370 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 45659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.7801 - 4.5898 1.00 3199 148 0.1337 0.1513 REMARK 3 2 4.5898 - 4.0102 1.00 3183 143 0.1235 0.1454 REMARK 3 3 4.0102 - 3.6438 1.00 3183 148 0.1494 0.1838 REMARK 3 4 3.6438 - 3.3827 0.99 3160 145 0.1594 0.2049 REMARK 3 5 3.3827 - 3.1834 0.99 3133 143 0.1778 0.1998 REMARK 3 6 3.1834 - 3.0240 0.99 3135 144 0.1782 0.2149 REMARK 3 7 3.0240 - 2.8924 0.99 3130 142 0.1833 0.2081 REMARK 3 8 2.8924 - 2.7811 0.99 3130 141 0.1894 0.2427 REMARK 3 9 2.7811 - 2.6851 0.98 3064 143 0.2079 0.2512 REMARK 3 10 2.6851 - 2.6012 0.98 3122 142 0.2024 0.2356 REMARK 3 11 2.6012 - 2.5268 0.98 3081 143 0.2031 0.2517 REMARK 3 12 2.5268 - 2.4603 0.97 3087 141 0.2184 0.2817 REMARK 3 13 2.4603 - 2.4003 0.88 2795 121 0.2233 0.2507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4982 REMARK 3 ANGLE : 0.973 6858 REMARK 3 CHIRALITY : 0.057 790 REMARK 3 PLANARITY : 0.006 902 REMARK 3 DIHEDRAL : 7.771 2940 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-OCT-21. REMARK 100 THE DEPOSITION ID IS D_1300017742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 7VP0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, BICINE, PH 9.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.87450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.23200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.87450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.23200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 229 REMARK 465 LYS A 230 REMARK 465 GLN B 229 REMARK 465 LYS B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 238 42.37 -95.04 REMARK 500 ASP A 261 48.26 -86.34 REMARK 500 GLN A 267 44.61 -154.67 REMARK 500 ASP A 302 35.99 70.54 REMARK 500 ASN A 351 174.43 71.49 REMARK 500 GLN A 365 30.76 -97.33 REMARK 500 SER A 414 -151.23 56.74 REMARK 500 HIS A 450 68.48 61.56 REMARK 500 ASN B 238 42.40 -94.86 REMARK 500 ASP B 261 31.27 -86.18 REMARK 500 GLN B 267 45.31 -154.57 REMARK 500 ASN B 351 172.86 73.22 REMARK 500 GLN B 365 33.79 -97.87 REMARK 500 ASN B 377 60.25 39.78 REMARK 500 SER B 414 -149.20 54.79 REMARK 500 THR B 417 170.80 -58.66 REMARK 500 PRO B 443 69.86 -69.82 REMARK 500 HIS B 450 63.88 65.50 REMARK 500 HIS B 487 15.83 58.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 322 OG REMARK 620 2 HOH A 727 O 104.6 REMARK 620 3 HOH A 803 O 99.2 94.5 REMARK 620 4 HOH A 841 O 84.5 170.9 84.3 REMARK 620 5 HOH A 846 O 84.9 93.4 169.9 86.9 REMARK 620 6 HOH A 871 O 164.4 90.6 82.9 80.3 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 322 OG REMARK 620 2 HOH B 731 O 97.6 REMARK 620 3 HOH B 805 O 94.8 80.7 REMARK 620 4 HOH B 853 O 84.6 88.9 169.3 REMARK 620 5 HOH B 854 O 93.9 167.7 94.0 96.6 REMARK 620 6 HOH B 872 O 177.3 85.0 85.2 95.9 83.5 REMARK 620 N 1 2 3 4 5 DBREF 7VS8 A 229 540 UNP F2XMU3 F2XMU3_9CALI 229 540 DBREF 7VS8 B 229 540 UNP F2XMU3 F2XMU3_9CALI 229 540 SEQRES 1 A 312 GLN LYS THR LYS GLN PHE SER VAL PRO ASN LEU PRO LEU SEQRES 2 A 312 ASN VAL MET SER ASN SER ARG VAL PRO SER LEU LEU ASN SEQRES 3 A 312 ALA MET VAL VAL SER PRO ASP GLN ALA GLN VAL VAL GLN SEQRES 4 A 312 PHE GLN ASN GLY ARG CYS THR LEU ASP GLY GLN MET LEU SEQRES 5 A 312 GLY THR THR THR VAL SER ALA SER CYS VAL ALA ARG PHE SEQRES 6 A 312 ARG GLY LYS THR PHE GLN ALA PRO ASP ASN ARG LEU GLY SEQRES 7 A 312 ILE ASN LEU ALA GLU ILE SER GLY GLU PRO TYR HIS ALA SEQRES 8 A 312 PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP PHE GLY SEQRES 9 A 312 ASP GLY ASP TRP HIS VAL THR ALA THR LYS VAL THR PRO SEQRES 10 A 312 SER GLN LEU GLU ALA ASN ASP PRO VAL VAL VAL GLY ASN SEQRES 11 A 312 VAL GLN PRO TYR ASN PRO GLN PHE ALA PRO HIS LEU GLY SEQRES 12 A 312 THR LEU VAL VAL GLU ASN PRO THR PRO ASP GLN VAL ALA SEQRES 13 A 312 THR GLY THR ASP LEU LEU PHE ASN ILE THR TRP LEU SER SEQRES 14 A 312 ASN ARG ALA ASN ASN ARG PHE ASN PRO TRP VAL ILE PRO SEQRES 15 A 312 ASN TYR GLY SER THR LEU THR GLU ALA ALA GLN LEU ALA SEQRES 16 A 312 PRO SER ILE PHE PRO PRO GLY PHE GLY GLU THR ILE VAL SEQRES 17 A 312 TYR PHE ASN SER THR PHE PRO ALA VAL GLY ALA THR THR SEQRES 18 A 312 HIS ALA ALA ILE PRO CYS LEU LEU PRO GLN GLU PHE VAL SEQRES 19 A 312 ALA HIS PHE VAL ASN GLU GLN ALA PRO ILE ARG GLY GLU SEQRES 20 A 312 ALA ALA LEU LEU HIS TYR ILE ASP PRO ASP THR HIS ARG SEQRES 21 A 312 ASN LEU GLY GLU PHE LYS ILE TYR PRO GLU GLY PHE VAL SEQRES 22 A 312 THR CYS VAL PRO ASN VAL GLY GLY THR GLY PRO GLN SER SEQRES 23 A 312 LEU PRO THR ASN GLY VAL PHE VAL PHE VAL SER TRP VAL SEQRES 24 A 312 SER ARG TYR TYR GLN LEU LYS PRO VAL GLY THR ALA GLY SEQRES 1 B 312 GLN LYS THR LYS GLN PHE SER VAL PRO ASN LEU PRO LEU SEQRES 2 B 312 ASN VAL MET SER ASN SER ARG VAL PRO SER LEU LEU ASN SEQRES 3 B 312 ALA MET VAL VAL SER PRO ASP GLN ALA GLN VAL VAL GLN SEQRES 4 B 312 PHE GLN ASN GLY ARG CYS THR LEU ASP GLY GLN MET LEU SEQRES 5 B 312 GLY THR THR THR VAL SER ALA SER CYS VAL ALA ARG PHE SEQRES 6 B 312 ARG GLY LYS THR PHE GLN ALA PRO ASP ASN ARG LEU GLY SEQRES 7 B 312 ILE ASN LEU ALA GLU ILE SER GLY GLU PRO TYR HIS ALA SEQRES 8 B 312 PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP PHE GLY SEQRES 9 B 312 ASP GLY ASP TRP HIS VAL THR ALA THR LYS VAL THR PRO SEQRES 10 B 312 SER GLN LEU GLU ALA ASN ASP PRO VAL VAL VAL GLY ASN SEQRES 11 B 312 VAL GLN PRO TYR ASN PRO GLN PHE ALA PRO HIS LEU GLY SEQRES 12 B 312 THR LEU VAL VAL GLU ASN PRO THR PRO ASP GLN VAL ALA SEQRES 13 B 312 THR GLY THR ASP LEU LEU PHE ASN ILE THR TRP LEU SER SEQRES 14 B 312 ASN ARG ALA ASN ASN ARG PHE ASN PRO TRP VAL ILE PRO SEQRES 15 B 312 ASN TYR GLY SER THR LEU THR GLU ALA ALA GLN LEU ALA SEQRES 16 B 312 PRO SER ILE PHE PRO PRO GLY PHE GLY GLU THR ILE VAL SEQRES 17 B 312 TYR PHE ASN SER THR PHE PRO ALA VAL GLY ALA THR THR SEQRES 18 B 312 HIS ALA ALA ILE PRO CYS LEU LEU PRO GLN GLU PHE VAL SEQRES 19 B 312 ALA HIS PHE VAL ASN GLU GLN ALA PRO ILE ARG GLY GLU SEQRES 20 B 312 ALA ALA LEU LEU HIS TYR ILE ASP PRO ASP THR HIS ARG SEQRES 21 B 312 ASN LEU GLY GLU PHE LYS ILE TYR PRO GLU GLY PHE VAL SEQRES 22 B 312 THR CYS VAL PRO ASN VAL GLY GLY THR GLY PRO GLN SER SEQRES 23 B 312 LEU PRO THR ASN GLY VAL PHE VAL PHE VAL SER TRP VAL SEQRES 24 B 312 SER ARG TYR TYR GLN LEU LYS PRO VAL GLY THR ALA GLY HET NDG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET FUC C 4 10 HET NDG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET FUC D 4 10 HET MG A 601 1 HET CL A 602 1 HET CL A 603 1 HET CL A 604 1 HET CL A 605 1 HET CL A 606 1 HET MG B 601 1 HET CL B 602 1 HET CL B 603 1 HET CL B 604 1 HET CL B 605 1 HET CL B 606 1 HET CL B 607 1 HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 5 MG 2(MG 2+) FORMUL 6 CL 11(CL 1-) FORMUL 18 HOH *374(H2 O) HELIX 1 AA1 PRO A 240 MET A 244 5 5 HELIX 2 AA2 SER A 286 VAL A 290 5 5 HELIX 3 AA3 PRO A 301 ASN A 303 5 3 HELIX 4 AA4 THR A 344 GLU A 349 5 6 HELIX 5 AA5 PRO A 458 GLN A 469 1 12 HELIX 6 AA6 THR A 510 LEU A 515 5 6 HELIX 7 AA7 PRO B 240 MET B 244 5 5 HELIX 8 AA8 SER B 286 VAL B 290 5 5 HELIX 9 AA9 PRO B 301 ASN B 303 5 3 HELIX 10 AB1 THR B 344 GLU B 349 5 6 HELIX 11 AB2 PRO B 458 GLN B 469 1 12 HELIX 12 AB3 THR B 510 LEU B 515 5 6 SHEET 1 AA1 3 ALA A 255 VAL A 258 0 SHEET 2 AA1 3 THR A 434 THR A 441 -1 O TYR A 437 N VAL A 257 SHEET 3 AA1 3 ALA A 452 CYS A 455 -1 O CYS A 455 N PHE A 438 SHEET 1 AA2 6 ALA A 255 VAL A 258 0 SHEET 2 AA2 6 THR A 434 THR A 441 -1 O TYR A 437 N VAL A 257 SHEET 3 AA2 6 PHE A 500 CYS A 503 -1 O VAL A 501 N VAL A 436 SHEET 4 AA2 6 ASN A 489 TYR A 496 -1 N LYS A 494 O THR A 502 SHEET 5 AA2 6 ALA A 476 ILE A 482 -1 N LEU A 479 O PHE A 493 SHEET 6 AA2 6 VAL A 520 VAL A 527 -1 O VAL A 520 N ILE A 482 SHEET 1 AA3 8 ALA A 444 VAL A 445 0 SHEET 2 AA3 8 ASP A 388 ASN A 398 1 N LEU A 396 O VAL A 445 SHEET 3 AA3 8 GLY A 334 LYS A 342 -1 N HIS A 337 O TRP A 395 SHEET 4 AA3 8 VAL A 354 VAL A 359 -1 O VAL A 355 N ALA A 340 SHEET 5 AA3 8 THR A 372 THR A 379 -1 O GLU A 376 N ASN A 358 SHEET 6 AA3 8 ARG A 304 ALA A 310 -1 N LEU A 305 O VAL A 375 SHEET 7 AA3 8 ARG A 292 ALA A 300 -1 N LYS A 296 O ASN A 308 SHEET 8 AA3 8 ASP A 388 ASN A 398 -1 O PHE A 391 N PHE A 293 SHEET 1 AA4 3 ALA B 255 VAL B 258 0 SHEET 2 AA4 3 THR B 434 THR B 441 -1 O TYR B 437 N VAL B 257 SHEET 3 AA4 3 ALA B 452 CYS B 455 -1 O CYS B 455 N PHE B 438 SHEET 1 AA5 6 ALA B 255 VAL B 258 0 SHEET 2 AA5 6 THR B 434 THR B 441 -1 O TYR B 437 N VAL B 257 SHEET 3 AA5 6 VAL B 501 CYS B 503 -1 O VAL B 501 N VAL B 436 SHEET 4 AA5 6 ASN B 489 ILE B 495 -1 N LYS B 494 O THR B 502 SHEET 5 AA5 6 ALA B 476 ILE B 482 -1 N TYR B 481 O LEU B 490 SHEET 6 AA5 6 VAL B 520 VAL B 527 -1 O VAL B 520 N ILE B 482 SHEET 1 AA6 8 ALA B 444 VAL B 445 0 SHEET 2 AA6 8 ASP B 388 ASN B 398 1 N LEU B 396 O VAL B 445 SHEET 3 AA6 8 GLY B 334 LYS B 342 -1 N HIS B 337 O TRP B 395 SHEET 4 AA6 8 VAL B 354 VAL B 359 -1 O VAL B 355 N ALA B 340 SHEET 5 AA6 8 THR B 372 THR B 379 -1 O GLU B 376 N ASN B 358 SHEET 6 AA6 8 ARG B 304 ALA B 310 -1 N LEU B 305 O VAL B 375 SHEET 7 AA6 8 ARG B 292 ALA B 300 -1 N LYS B 296 O ASN B 308 SHEET 8 AA6 8 ASP B 388 ASN B 398 -1 O PHE B 391 N PHE B 293 LINK O3 NDG C 1 C1 GAL C 2 1555 1555 1.44 LINK O4 NDG C 1 C1 FUC C 4 1555 1555 1.44 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.44 LINK O3 NDG D 1 C1 GAL D 2 1555 1555 1.44 LINK O4 NDG D 1 C1 FUC D 4 1555 1555 1.44 LINK O2 GAL D 2 C1 FUC D 3 1555 1555 1.43 LINK OG SER A 322 MG MG A 601 1555 1555 2.32 LINK MG MG A 601 O HOH A 727 1555 1555 2.12 LINK MG MG A 601 O HOH A 803 1555 1555 2.10 LINK MG MG A 601 O HOH A 841 1555 1555 2.26 LINK MG MG A 601 O HOH A 846 1555 1555 2.28 LINK MG MG A 601 O HOH A 871 1555 1555 2.31 LINK OG SER B 322 MG MG B 601 1555 1555 2.29 LINK MG MG B 601 O HOH B 731 1555 1555 2.22 LINK MG MG B 601 O HOH B 805 1555 1555 2.10 LINK MG MG B 601 O HOH B 853 1555 1555 2.37 LINK MG MG B 601 O HOH B 854 1555 1555 2.18 LINK MG MG B 601 O HOH B 872 1555 1555 2.18 CISPEP 1 THR A 379 PRO A 380 0 -2.01 CISPEP 2 THR B 379 PRO B 380 0 1.41 CRYST1 183.749 76.464 103.281 90.00 124.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005442 0.000000 0.003699 0.00000 SCALE2 0.000000 0.013078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011707 0.00000