HEADER MEMBRANE PROTEIN 27-OCT-21 7VSO TITLE SERIAL FEMTOSECOND CRYSTALLOGRAPHY (SFX) OF GROUND STATE TITLE 2 BACTERIORHODOPSIN CRYSTALLIZED FROM BICELLES IN COMPLEX WITH HAD16 TITLE 3 DETERMINED USING 7-KEV X-RAY FREE ELECTRON LASER (XFEL) AT SACLA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BR,BACTERIOOPSIN,BO SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; SOURCE 3 ORGANISM_TAXID: 2242; SOURCE 4 STRAIN: R1M1 KEYWDS PROTON PUMP, TRANSPORT PROTEIN, RETINAL, PROTON TRANSPORT, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.MIZOHATA,T.NAKANE,S.HANASHIMA REVDAT 3 29-NOV-23 7VSO 1 REMARK REVDAT 2 06-SEP-23 7VSO 1 REMARK REVDAT 1 16-FEB-22 7VSO 0 JRNL AUTH S.HANASHIMA,T.NAKANE,E.MIZOHATA JRNL TITL HEAVY ATOM DETERGENT/LIPID COMBINED X-RAY CRYSTALLOGRAPHY JRNL TITL 2 FOR ELUCIDATING THE STRUCTURE-FUNCTION RELATIONSHIPS OF JRNL TITL 3 MEMBRANE PROTEINS. JRNL REF MEMBRANES (BASEL) V. 11 2021 JRNL REFN ESSN 2077-0375 JRNL PMID 34832053 JRNL DOI 10.3390/MEMBRANES11110823 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 650 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 253 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.393 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2070 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2759 ; 1.955 ; 2.088 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 4.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 58 ;35.440 ;22.069 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;17.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1356 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 895 ; 5.169 ; 7.272 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1117 ; 5.992 ;10.921 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1175 ; 8.309 ; 8.353 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8196 ;10.682 ;71.546 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 7VSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : BL3 REMARK 200 X-RAY GENERATOR MODEL : SACLA BEAMLINE BL3 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.771 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MPCCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 42.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 206.2 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5B35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) DMPC/CHAPSO BICELLES, 3.2 M REMARK 280 REMARK 280 NAH2PO4, 3.5%(W/V) TRIETHYLENE GLYCOL, 180 MM 1,6- REMARK 280 HEXANEDIOL, 4 MM HAD16, BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.10000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.10000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.35000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.10000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.50000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.35000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.10000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.50000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 103.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 231 REMARK 465 GLU A 232 REMARK 465 ALA A 233 REMARK 465 GLU A 234 REMARK 465 ALA A 235 REMARK 465 PRO A 236 REMARK 465 GLU A 237 REMARK 465 PRO A 238 REMARK 465 SER A 239 REMARK 465 ALA A 240 REMARK 465 GLY A 241 REMARK 465 ASP A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 ALA A 245 REMARK 465 ALA A 246 REMARK 465 THR A 247 REMARK 465 SER A 248 REMARK 465 ASP A 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 216 C15 RET A 301 1.19 REMARK 500 NZ LYS A 216 C14 RET A 301 2.08 REMARK 500 CE LYS A 216 C15 RET A 301 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 85 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 RET A 301 REMARK 610 CPS A 304 DBREF 7VSO A 1 249 UNP P02945 BACR_HALSA 14 262 SEQRES 1 A 249 GLN ALA GLN ILE THR GLY ARG PRO GLU TRP ILE TRP LEU SEQRES 2 A 249 ALA LEU GLY THR ALA LEU MET GLY LEU GLY THR LEU TYR SEQRES 3 A 249 PHE LEU VAL LYS GLY MET GLY VAL SER ASP PRO ASP ALA SEQRES 4 A 249 LYS LYS PHE TYR ALA ILE THR THR LEU VAL PRO ALA ILE SEQRES 5 A 249 ALA PHE THR MET TYR LEU SER MET LEU LEU GLY TYR GLY SEQRES 6 A 249 LEU THR MET VAL PRO PHE GLY GLY GLU GLN ASN PRO ILE SEQRES 7 A 249 TYR TRP ALA ARG TYR ALA ASP TRP LEU PHE THR THR PRO SEQRES 8 A 249 LEU LEU LEU LEU ASP LEU ALA LEU LEU VAL ASP ALA ASP SEQRES 9 A 249 GLN GLY THR ILE LEU ALA LEU VAL GLY ALA ASP GLY ILE SEQRES 10 A 249 MET ILE GLY THR GLY LEU VAL GLY ALA LEU THR LYS VAL SEQRES 11 A 249 TYR SER TYR ARG PHE VAL TRP TRP ALA ILE SER THR ALA SEQRES 12 A 249 ALA MET LEU TYR ILE LEU TYR VAL LEU PHE PHE GLY PHE SEQRES 13 A 249 THR SER LYS ALA GLU SER MET ARG PRO GLU VAL ALA SER SEQRES 14 A 249 THR PHE LYS VAL LEU ARG ASN VAL THR VAL VAL LEU TRP SEQRES 15 A 249 SER ALA TYR PRO VAL VAL TRP LEU ILE GLY SER GLU GLY SEQRES 16 A 249 ALA GLY ILE VAL PRO LEU ASN ILE GLU THR LEU LEU PHE SEQRES 17 A 249 MET VAL LEU ASP VAL SER ALA LYS VAL GLY PHE GLY LEU SEQRES 18 A 249 ILE LEU LEU ARG SER ARG ALA ILE PHE GLY GLU ALA GLU SEQRES 19 A 249 ALA PRO GLU PRO SER ALA GLY ASP GLY ALA ALA ALA THR SEQRES 20 A 249 SER ASP HET RET A 301 20 HET 7YH A 302 82 HET IOD A 303 1 HET CPS A 304 27 HET OCT A 305 8 HET HP6 A 306 7 HET D12 A 307 12 HET R16 A 308 16 HET D10 A 309 10 HET R16 A 310 16 HET HP6 A 311 7 HET D10 A 312 10 HET HP6 A 313 7 HET HP6 A 314 7 HET DD9 A 315 9 HET D12 A 316 12 HET D12 A 317 12 HET R16 A 318 16 HET HP6 A 319 7 HET OCT A 320 8 HETNAM RET RETINAL HETNAM 7YH 2-[[(2R)-2-(3-BROMANYL-5-IODANYL-PHENYL)CARBONYLOXY-3- HETNAM 2 7YH TETRADECANOYLOXY-PROPOXY]-OXIDANYL- HETNAM 3 7YH PHOSPHORYL]OXYETHYL-TRIMETHYL-AZANIUM HETNAM IOD IODIDE ION HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM OCT N-OCTANE HETNAM HP6 HEPTANE HETNAM D12 DODECANE HETNAM R16 HEXADECANE HETNAM D10 DECANE HETNAM DD9 NONANE HETSYN CPS CHAPS FORMUL 2 RET C20 H28 O FORMUL 3 7YH C29 H49 BR I N O8 P 1+ FORMUL 4 IOD I 1- FORMUL 5 CPS C32 H58 N2 O7 S FORMUL 6 OCT 2(C8 H18) FORMUL 7 HP6 5(C7 H16) FORMUL 8 D12 3(C12 H26) FORMUL 9 R16 3(C16 H34) FORMUL 10 D10 2(C10 H22) FORMUL 16 DD9 C9 H20 FORMUL 22 HOH *32(H2 O) HELIX 1 AA1 GLU A 9 GLY A 33 1 25 HELIX 2 AA2 ASP A 36 LEU A 62 1 27 HELIX 3 AA3 TRP A 80 ASP A 102 1 23 HELIX 4 AA4 ASP A 104 THR A 128 1 25 HELIX 5 AA5 VAL A 130 PHE A 154 1 25 HELIX 6 AA6 PHE A 154 GLU A 161 1 8 HELIX 7 AA7 ARG A 164 GLY A 192 1 29 HELIX 8 AA8 PRO A 200 ARG A 225 1 26 HELIX 9 AA9 SER A 226 PHE A 230 5 5 SHEET 1 AA1 2 LEU A 66 PHE A 71 0 SHEET 2 AA1 2 GLU A 74 TYR A 79 -1 O ILE A 78 N THR A 67 CRYST1 46.200 103.000 128.700 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021645 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007770 0.00000 CONECT 1743 1744 1748 1758 1759 CONECT 1744 1743 1745 CONECT 1745 1744 1746 CONECT 1746 1745 1747 CONECT 1747 1746 1748 1760 CONECT 1748 1743 1747 1749 CONECT 1749 1748 1750 CONECT 1750 1749 1751 CONECT 1751 1750 1752 1761 CONECT 1752 1751 1753 CONECT 1753 1752 1754 CONECT 1754 1753 1755 CONECT 1755 1754 1756 1762 CONECT 1756 1755 1757 CONECT 1757 1756 CONECT 1758 1743 CONECT 1759 1743 CONECT 1760 1747 CONECT 1761 1751 CONECT 1762 1755 CONECT 1763 1765 CONECT 1764 1766 CONECT 1765 1763 1767 1769 1783 CONECT 1766 1764 1768 1770 1784 CONECT 1767 1765 CONECT 1768 1766 CONECT 1769 1765 1771 CONECT 1770 1766 1772 CONECT 1771 1769 1773 CONECT 1772 1770 1774 CONECT 1773 1771 1775 CONECT 1774 1772 1776 CONECT 1775 1773 1777 1779 1781 CONECT 1776 1774 1778 1780 1782 CONECT 1777 1775 CONECT 1778 1776 CONECT 1779 1775 CONECT 1780 1776 CONECT 1781 1775 CONECT 1782 1776 CONECT 1783 1765 1785 CONECT 1784 1766 1786 CONECT 1785 1783 1787 CONECT 1786 1784 1788 CONECT 1787 1785 1789 1811 CONECT 1788 1786 1790 1812 CONECT 1789 1787 1791 CONECT 1790 1788 1792 CONECT 1791 1789 1793 1795 CONECT 1792 1790 1794 1796 CONECT 1793 1791 CONECT 1794 1792 CONECT 1795 1791 1797 1805 CONECT 1796 1792 1798 1806 CONECT 1797 1795 1799 CONECT 1798 1796 1800 CONECT 1799 1797 1801 1803 CONECT 1800 1798 1802 1804 CONECT 1801 1799 CONECT 1802 1800 CONECT 1803 1799 1807 CONECT 1804 1800 1808 CONECT 1805 1795 1807 CONECT 1806 1796 1808 CONECT 1807 1803 1805 1809 CONECT 1808 1804 1806 1810 CONECT 1809 1807 CONECT 1810 1808 CONECT 1811 1787 1813 CONECT 1812 1788 1814 CONECT 1813 1811 1815 CONECT 1814 1812 1816 CONECT 1815 1813 1817 1819 CONECT 1816 1814 1818 1820 CONECT 1817 1815 CONECT 1818 1816 CONECT 1819 1815 1821 CONECT 1820 1816 1822 CONECT 1821 1819 1823 CONECT 1822 1820 1824 CONECT 1823 1821 1825 CONECT 1824 1822 1826 CONECT 1825 1823 1827 CONECT 1826 1824 1828 CONECT 1827 1825 1829 CONECT 1828 1826 1830 CONECT 1829 1827 1831 CONECT 1830 1828 1832 CONECT 1831 1829 1833 CONECT 1832 1830 1834 CONECT 1833 1831 1835 CONECT 1834 1832 1836 CONECT 1835 1833 1837 CONECT 1836 1834 1838 CONECT 1837 1835 1839 CONECT 1838 1836 1840 CONECT 1839 1837 1841 CONECT 1840 1838 1842 CONECT 1841 1839 1843 CONECT 1842 1840 1844 CONECT 1843 1841 CONECT 1844 1842 CONECT 1846 1847 1857 CONECT 1847 1846 1856 1860 1864 CONECT 1848 1849 1864 CONECT 1849 1848 1850 1872 CONECT 1850 1849 1851 1854 1855 CONECT 1851 1850 1852 1863 CONECT 1852 1851 1853 CONECT 1853 1852 1854 CONECT 1854 1850 1853 1865 CONECT 1855 1850 CONECT 1856 1847 CONECT 1857 1846 1858 CONECT 1858 1857 1859 1870 CONECT 1859 1858 1860 CONECT 1860 1847 1859 1861 CONECT 1861 1860 1862 CONECT 1862 1861 1863 1871 CONECT 1863 1851 1862 1864 CONECT 1864 1847 1848 1863 CONECT 1865 1854 1866 1867 CONECT 1866 1865 CONECT 1867 1865 1868 CONECT 1868 1867 1869 CONECT 1869 1868 CONECT 1870 1858 CONECT 1871 1862 CONECT 1872 1849 CONECT 1873 1874 CONECT 1874 1873 1875 CONECT 1875 1874 1876 CONECT 1876 1875 1877 CONECT 1877 1876 1878 CONECT 1878 1877 1879 CONECT 1879 1878 1880 CONECT 1880 1879 CONECT 1881 1882 CONECT 1882 1881 1883 CONECT 1883 1882 1884 CONECT 1884 1883 1885 CONECT 1885 1884 1886 CONECT 1886 1885 1887 CONECT 1887 1886 CONECT 1888 1889 CONECT 1889 1888 1890 CONECT 1890 1889 1891 CONECT 1891 1890 1892 CONECT 1892 1891 1893 CONECT 1893 1892 1894 CONECT 1894 1893 1895 CONECT 1895 1894 1896 CONECT 1896 1895 1897 CONECT 1897 1896 1898 CONECT 1898 1897 1899 CONECT 1899 1898 CONECT 1900 1901 CONECT 1901 1900 1902 CONECT 1902 1901 1903 CONECT 1903 1902 1904 CONECT 1904 1903 1905 CONECT 1905 1904 1906 CONECT 1906 1905 1907 CONECT 1907 1906 1908 CONECT 1908 1907 1909 CONECT 1909 1908 1910 CONECT 1910 1909 1911 CONECT 1911 1910 1912 CONECT 1912 1911 1913 CONECT 1913 1912 1914 CONECT 1914 1913 1915 CONECT 1915 1914 CONECT 1916 1917 CONECT 1917 1916 1918 CONECT 1918 1917 1919 CONECT 1919 1918 1920 CONECT 1920 1919 1921 CONECT 1921 1920 1922 CONECT 1922 1921 1923 CONECT 1923 1922 1924 CONECT 1924 1923 1925 CONECT 1925 1924 CONECT 1926 1927 CONECT 1927 1926 1928 CONECT 1928 1927 1929 CONECT 1929 1928 1930 CONECT 1930 1929 1931 CONECT 1931 1930 1932 CONECT 1932 1931 1933 CONECT 1933 1932 1934 CONECT 1934 1933 1935 CONECT 1935 1934 1936 CONECT 1936 1935 1937 CONECT 1937 1936 1938 CONECT 1938 1937 1939 CONECT 1939 1938 1940 CONECT 1940 1939 1941 CONECT 1941 1940 CONECT 1942 1943 CONECT 1943 1942 1944 CONECT 1944 1943 1945 CONECT 1945 1944 1946 CONECT 1946 1945 1947 CONECT 1947 1946 1948 CONECT 1948 1947 CONECT 1949 1950 CONECT 1950 1949 1951 CONECT 1951 1950 1952 CONECT 1952 1951 1953 CONECT 1953 1952 1954 CONECT 1954 1953 1955 CONECT 1955 1954 1956 CONECT 1956 1955 1957 CONECT 1957 1956 1958 CONECT 1958 1957 CONECT 1959 1960 CONECT 1960 1959 1961 CONECT 1961 1960 1962 CONECT 1962 1961 1963 CONECT 1963 1962 1964 CONECT 1964 1963 1965 CONECT 1965 1964 CONECT 1966 1967 CONECT 1967 1966 1968 CONECT 1968 1967 1969 CONECT 1969 1968 1970 CONECT 1970 1969 1971 CONECT 1971 1970 1972 CONECT 1972 1971 CONECT 1973 1974 CONECT 1974 1973 1975 CONECT 1975 1974 1976 CONECT 1976 1975 1977 CONECT 1977 1976 1978 CONECT 1978 1977 1979 CONECT 1979 1978 1980 CONECT 1980 1979 1981 CONECT 1981 1980 CONECT 1982 1983 CONECT 1983 1982 1984 CONECT 1984 1983 1985 CONECT 1985 1984 1986 CONECT 1986 1985 1987 CONECT 1987 1986 1988 CONECT 1988 1987 1989 CONECT 1989 1988 1990 CONECT 1990 1989 1991 CONECT 1991 1990 1992 CONECT 1992 1991 1993 CONECT 1993 1992 CONECT 1994 1995 CONECT 1995 1994 1996 CONECT 1996 1995 1997 CONECT 1997 1996 1998 CONECT 1998 1997 1999 CONECT 1999 1998 2000 CONECT 2000 1999 2001 CONECT 2001 2000 2002 CONECT 2002 2001 2003 CONECT 2003 2002 2004 CONECT 2004 2003 2005 CONECT 2005 2004 CONECT 2006 2007 CONECT 2007 2006 2008 CONECT 2008 2007 2009 CONECT 2009 2008 2010 CONECT 2010 2009 2011 CONECT 2011 2010 2012 CONECT 2012 2011 2013 CONECT 2013 2012 2014 CONECT 2014 2013 2015 CONECT 2015 2014 2016 CONECT 2016 2015 2017 CONECT 2017 2016 2018 CONECT 2018 2017 2019 CONECT 2019 2018 2020 CONECT 2020 2019 2021 CONECT 2021 2020 CONECT 2022 2023 CONECT 2023 2022 2024 CONECT 2024 2023 2025 CONECT 2025 2024 2026 CONECT 2026 2025 2027 CONECT 2027 2026 2028 CONECT 2028 2027 CONECT 2029 2030 CONECT 2030 2029 2031 CONECT 2031 2030 2032 CONECT 2032 2031 2033 CONECT 2033 2032 2034 CONECT 2034 2033 2035 CONECT 2035 2034 2036 CONECT 2036 2035 MASTER 338 0 20 9 2 0 0 6 2026 1 293 20 END