HEADER RNA BINDING PROTEIN/RNA 29-OCT-21 7VTI TITLE CRYSTAL STRUCTURE OF THE CAS13BT3-CRRNA BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAS13BT3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CRRNA; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLANCTOMYCETES BACTERIUM; SOURCE 3 ORGANISM_TAXID: 2026780; SOURCE 4 GENE: DRP66_05270; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKAGAWA,N.S.TAKEDA,A.TOMITA,H.HIRANO,T.KUSAKIZAKO,T.NISHIZAWA, AUTHOR 2 K.YAMASHITA,H.NISHIMASU,O.NUREKI REVDAT 4 15-NOV-23 7VTI 1 REMARK REVDAT 3 23-AUG-23 7VTI 1 JRNL REVDAT 2 14-SEP-22 7VTI 1 JRNL REVDAT 1 24-AUG-22 7VTI 0 JRNL AUTH R.NAKAGAWA,S.KANNAN,H.ALTAE-TRAN,S.N.TAKEDA,A.TOMITA, JRNL AUTH 2 H.HIRANO,T.KUSAKIZAKO,T.NISHIZAWA,K.YAMASHITA,F.ZHANG, JRNL AUTH 3 H.NISHIMASU,O.NUREKI JRNL TITL STRUCTURE AND ENGINEERING OF THE MINIMAL TYPE VI JRNL TITL 2 CRISPR-CAS13BT3. JRNL REF MOL.CELL V. 82 3178 2022 JRNL REFN ISSN 1097-2765 JRNL PMID 36027912 JRNL DOI 10.1016/J.MOLCEL.2022.08.001 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0291 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 73944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2287 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6033 REMARK 3 NUCLEIC ACID ATOMS : 856 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : -2.65000 REMARK 3 B33 (A**2) : 1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.688 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7290 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6458 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9957 ; 1.797 ; 1.675 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14871 ; 1.286 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 743 ; 6.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 372 ;30.737 ;21.210 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1118 ;15.654 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;17.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 957 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7704 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1719 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7VTI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9780 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 146058 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.98 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.89 REMARK 200 R MERGE FOR SHELL (I) : 2.88300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 0.2 M SODIUM BROMIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.21700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.64150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.72600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.64150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.21700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.72600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 THR A 8 REMARK 465 SER A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 ASP A 227 REMARK 465 LYS A 228 REMARK 465 LYS A 229 REMARK 465 ARG A 230 REMARK 465 ALA A 231 REMARK 465 ASN A 232 REMARK 465 ASP A 233 REMARK 465 ASN A 234 REMARK 465 GLU A 235 REMARK 465 GLY A 236 REMARK 465 THR A 237 REMARK 465 GLU A 271 REMARK 465 GLU A 272 REMARK 465 ALA A 273 REMARK 465 GLY A 274 REMARK 465 ALA A 275 REMARK 465 GLY A 276 REMARK 465 ASP A 277 REMARK 465 GLU A 278 REMARK 465 HIS A 279 REMARK 465 LYS A 280 REMARK 465 LYS A 281 REMARK 465 HIS A 282 REMARK 465 ARG A 283 REMARK 465 U B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 GLU A 464 CG CD OE1 OE2 REMARK 470 LYS A 667 CG CD CE NZ REMARK 470 GLU A 711 CG CD OE1 OE2 REMARK 470 ARG A 719 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 775 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 722 OG1 THR A 725 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 154 CD GLU A 154 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 184 CG - SE - CE ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 536 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 592 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 MSE A 726 CG - SE - CE ANGL. DEV. = 14.3 DEGREES REMARK 500 MSE A 761 CG - SE - CE ANGL. DEV. = 16.6 DEGREES REMARK 500 G B -3 C3' - O3' - P ANGL. DEV. = -8.5 DEGREES REMARK 500 G B 5 N1 - C6 - O6 ANGL. DEV. = 3.6 DEGREES REMARK 500 G B 7 O3' - P - OP2 ANGL. DEV. = 10.5 DEGREES REMARK 500 G B 7 O5' - P - OP2 ANGL. DEV. = -6.9 DEGREES REMARK 500 G B 7 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 C B 8 O3' - P - O5' ANGL. DEV. = -11.9 DEGREES REMARK 500 G B 16 O3' - P - OP2 ANGL. DEV. = 8.0 DEGREES REMARK 500 U B 22 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 G B 23 O3' - P - OP1 ANGL. DEV. = 8.3 DEGREES REMARK 500 G B 26 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 A B 34 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 41 115.08 -163.41 REMARK 500 ASP A 62 -178.14 -66.79 REMARK 500 ASN A 315 -120.80 49.59 REMARK 500 ASP A 449 72.00 -104.41 REMARK 500 HIS A 527 45.77 -141.43 REMARK 500 GLU A 633 154.31 -46.33 REMARK 500 MSE A 663 45.03 -141.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 4 O6 REMARK 620 2 G B 5 O6 86.0 REMARK 620 3 U B 31 O4 118.3 98.2 REMARK 620 4 HOH B 263 O 144.8 128.8 67.5 REMARK 620 5 HOH B 283 O 103.8 90.6 137.4 74.5 REMARK 620 6 HOH B 286 O 80.4 159.3 101.9 64.8 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 7 O2' REMARK 620 2 G B 10 O6 92.7 REMARK 620 3 G B 26 O6 161.8 85.7 REMARK 620 4 U B 27 O4 78.1 94.2 83.9 REMARK 620 5 HOH B 219 O 94.7 172.5 87.8 88.7 REMARK 620 6 HOH B 247 O 87.4 97.2 110.8 162.0 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 212 O REMARK 620 2 HOH B 235 O 80.6 REMARK 620 3 HOH B 281 O 90.4 71.8 REMARK 620 4 HOH B 283 O 72.6 145.5 86.9 REMARK 620 5 HOH B 286 O 71.7 105.2 162.1 86.8 REMARK 620 N 1 2 3 4 DBREF1 7VTI A 1 775 UNP A0A660UUL5_9BACT DBREF2 7VTI A A0A660UUL5 1 775 DBREF 7VTI B -4 36 PDB 7VTI 7VTI -4 36 SEQADV 7VTI GLY A -1 UNP A0A660UUL EXPRESSION TAG SEQADV 7VTI GLY A 0 UNP A0A660UUL EXPRESSION TAG SEQADV 7VTI ALA A 84 UNP A0A660UUL ARG 84 ENGINEERED MUTATION SEQADV 7VTI ALA A 89 UNP A0A660UUL HIS 89 ENGINEERED MUTATION SEQADV 7VTI ALA A 739 UNP A0A660UUL ARG 739 ENGINEERED MUTATION SEQADV 7VTI ALA A 744 UNP A0A660UUL HIS 744 ENGINEERED MUTATION SEQRES 1 A 777 GLY GLY MSE ALA GLN VAL SER LYS GLN THR SER LYS LYS SEQRES 2 A 777 ARG GLU LEU SER ILE ASP GLU TYR GLN GLY ALA ARG LYS SEQRES 3 A 777 TRP CYS PHE THR ILE ALA PHE ASN LYS ALA LEU VAL ASN SEQRES 4 A 777 ARG ASP LYS ASN ASP GLY LEU PHE VAL GLU SER LEU LEU SEQRES 5 A 777 ARG HIS GLU LYS TYR SER LYS HIS ASP TRP TYR ASP GLU SEQRES 6 A 777 ASP THR ARG ALA LEU ILE LYS CYS SER THR GLN ALA ALA SEQRES 7 A 777 ASN ALA LYS ALA GLU ALA LEU ALA ASN TYR PHE SER ALA SEQRES 8 A 777 TYR ARG HIS SER PRO GLY CYS LEU THR PHE THR ALA GLU SEQRES 9 A 777 ASP GLU LEU ARG THR ILE MSE GLU ARG ALA TYR GLU ARG SEQRES 10 A 777 ALA ILE PHE GLU CYS ARG ARG ARG GLU THR GLU VAL ILE SEQRES 11 A 777 ILE GLU PHE PRO SER LEU PHE GLU GLY ASP ARG ILE THR SEQRES 12 A 777 THR ALA GLY VAL VAL PHE PHE VAL SER PHE PHE VAL GLU SEQRES 13 A 777 ARG ARG VAL LEU ASP ARG LEU TYR GLY ALA VAL SER GLY SEQRES 14 A 777 LEU LYS LYS ASN GLU GLY GLN TYR LYS LEU THR ARG LYS SEQRES 15 A 777 ALA LEU SER MSE TYR CYS LEU LYS ASP SER ARG PHE THR SEQRES 16 A 777 LYS ALA TRP ASP LYS ARG VAL LEU LEU PHE ARG ASP ILE SEQRES 17 A 777 LEU ALA GLN LEU GLY ARG ILE PRO ALA GLU ALA TYR GLU SEQRES 18 A 777 TYR TYR HIS GLY GLU GLN GLY ASP LYS LYS ARG ALA ASN SEQRES 19 A 777 ASP ASN GLU GLY THR ASN PRO LYS ARG HIS LYS ASP LYS SEQRES 20 A 777 PHE ILE GLU PHE ALA LEU HIS TYR LEU GLU ALA GLN HIS SEQRES 21 A 777 SER GLU ILE CYS PHE GLY ARG ARG HIS ILE VAL ARG GLU SEQRES 22 A 777 GLU ALA GLY ALA GLY ASP GLU HIS LYS LYS HIS ARG THR SEQRES 23 A 777 LYS GLY LYS VAL VAL VAL ASP PHE SER LYS LYS ASP GLU SEQRES 24 A 777 ASP GLN SER TYR TYR ILE SER LYS ASN ASN VAL ILE VAL SEQRES 25 A 777 ARG ILE ASP LYS ASN ALA GLY PRO ARG SER TYR ARG MSE SEQRES 26 A 777 GLY LEU ASN GLU LEU LYS TYR LEU VAL LEU LEU SER LEU SEQRES 27 A 777 GLN GLY LYS GLY ASP ASP ALA ILE ALA LYS LEU TYR ARG SEQRES 28 A 777 TYR ARG GLN HIS VAL GLU ASN ILE LEU ASP VAL VAL LYS SEQRES 29 A 777 VAL THR ASP LYS ASP ASN HIS VAL PHE LEU PRO ARG PHE SEQRES 30 A 777 VAL LEU GLU GLN HIS GLY ILE GLY ARG LYS ALA PHE LYS SEQRES 31 A 777 GLN ARG ILE ASP GLY ARG VAL LYS HIS VAL ARG GLY VAL SEQRES 32 A 777 TRP GLU LYS LYS LYS ALA ALA THR ASN GLU MSE THR LEU SEQRES 33 A 777 HIS GLU LYS ALA ARG ASP ILE LEU GLN TYR VAL ASN GLU SEQRES 34 A 777 ASN CYS THR ARG SER PHE ASN PRO GLY GLU TYR ASN ARG SEQRES 35 A 777 LEU LEU VAL CYS LEU VAL GLY LYS ASP VAL GLU ASN PHE SEQRES 36 A 777 GLN ALA GLY LEU LYS ARG LEU GLN LEU ALA GLU ARG ILE SEQRES 37 A 777 ASP GLY ARG VAL TYR SER ILE PHE ALA GLN THR SER THR SEQRES 38 A 777 ILE ASN GLU MSE HIS GLN VAL VAL CYS ASP GLN ILE LEU SEQRES 39 A 777 ASN ARG LEU CYS ARG ILE GLY ASP GLN LYS LEU TYR ASP SEQRES 40 A 777 TYR VAL GLY LEU GLY LYS LYS ASP GLU ILE ASP TYR LYS SEQRES 41 A 777 GLN LYS VAL ALA TRP PHE LYS GLU HIS ILE SER ILE ARG SEQRES 42 A 777 ARG GLY PHE LEU ARG LYS LYS PHE TRP TYR ASP SER LYS SEQRES 43 A 777 LYS GLY PHE ALA LYS LEU VAL GLU GLU HIS LEU GLU SER SEQRES 44 A 777 GLY GLY GLY GLN ARG ASP VAL GLY LEU ASP LYS LYS TYR SEQRES 45 A 777 TYR HIS ILE ASP ALA ILE GLY ARG PHE GLU GLY ALA ASN SEQRES 46 A 777 PRO ALA LEU TYR GLU THR LEU ALA ARG ASP ARG LEU CYS SEQRES 47 A 777 LEU MSE MSE ALA GLN TYR PHE LEU GLY SER VAL ARG LYS SEQRES 48 A 777 GLU LEU GLY ASN LYS ILE VAL TRP SER ASN ASP SER ILE SEQRES 49 A 777 GLU LEU PRO VAL GLU GLY SER VAL GLY ASN GLU LYS SER SEQRES 50 A 777 ILE VAL PHE SER VAL SER ASP TYR GLY LYS LEU TYR VAL SEQRES 51 A 777 LEU ASP ASP ALA GLU PHE LEU GLY ARG ILE CYS GLU TYR SEQRES 52 A 777 PHE MSE PRO HIS GLU LYS GLY LYS ILE ARG TYR HIS THR SEQRES 53 A 777 VAL TYR GLU LYS GLY PHE ARG ALA TYR ASN ASP LEU GLN SEQRES 54 A 777 LYS LYS CYS VAL GLU ALA VAL LEU ALA PHE GLU GLU LYS SEQRES 55 A 777 VAL VAL LYS ALA LYS LYS MSE SER GLU LYS GLU GLY ALA SEQRES 56 A 777 HIS TYR ILE ASP PHE ARG GLU ILE LEU ALA GLN THR MSE SEQRES 57 A 777 CYS LYS GLU ALA GLU LYS THR ALA VAL ASN LYS VAL ALA SEQRES 58 A 777 ARG ALA PHE PHE ALA HIS HIS LEU LYS PHE VAL ILE ASP SEQRES 59 A 777 GLU PHE GLY LEU PHE SER ASP VAL MSE LYS LYS TYR GLY SEQRES 60 A 777 ILE GLU LYS GLU TRP LYS PHE PRO VAL LYS SEQRES 1 B 41 U G U A U G C U G G A G C SEQRES 2 B 41 A G C C C C C G A U U U G SEQRES 3 B 41 U G G G G U G A U U A C A SEQRES 4 B 41 G C MODRES 7VTI MSE A 109 MET MODIFIED RESIDUE MODRES 7VTI MSE A 184 MET MODIFIED RESIDUE MODRES 7VTI MSE A 323 MET MODIFIED RESIDUE MODRES 7VTI MSE A 412 MET MODIFIED RESIDUE MODRES 7VTI MSE A 483 MET MODIFIED RESIDUE MODRES 7VTI MSE A 598 MET MODIFIED RESIDUE MODRES 7VTI MSE A 599 MET MODIFIED RESIDUE MODRES 7VTI MSE A 663 MET MODIFIED RESIDUE MODRES 7VTI MSE A 707 MET MODIFIED RESIDUE MODRES 7VTI MSE A 726 MET MODIFIED RESIDUE MODRES 7VTI MSE A 761 MET MODIFIED RESIDUE HET MSE A 109 8 HET MSE A 184 8 HET MSE A 323 8 HET MSE A 412 8 HET MSE A 483 8 HET MSE A 598 8 HET MSE A 599 8 HET MSE A 663 8 HET MSE A 707 8 HET MSE A 726 8 HET MSE A 761 8 HET CL A 801 1 HET CL A 802 1 HET CL A 803 1 HET CL A 804 1 HET CL A 805 1 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET EDO A 810 4 HET EDO A 811 4 HET EDO A 812 4 HET EDO A 813 4 HET EDO A 814 4 HET EDO A 815 4 HET EDO A 816 4 HET EDO A 817 4 HET EDO A 818 4 HET EDO A 819 4 HET EDO A 820 4 HET EDO A 821 4 HET EDO A 822 4 HET EDO A 823 4 HET EDO A 824 4 HET BR A 825 1 HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET EDO B 104 4 HET EDO B 105 4 HET EDO B 106 4 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM BR BROMIDE ION HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 CL 5(CL 1-) FORMUL 8 EDO 22(C2 H6 O2) FORMUL 27 BR BR 1- FORMUL 28 MG 3(MG 2+) FORMUL 34 HOH *339(H2 O) HELIX 1 AA1 SER A 15 TYR A 19 5 5 HELIX 2 AA2 GLN A 20 ARG A 23 5 4 HELIX 3 AA3 LYS A 24 ASN A 41 1 18 HELIX 4 AA4 GLY A 43 ARG A 51 1 9 HELIX 5 AA5 HIS A 52 SER A 56 5 5 HELIX 6 AA6 ASP A 62 SER A 72 1 11 HELIX 7 AA7 SER A 72 ALA A 89 1 18 HELIX 8 AA8 SER A 93 THR A 98 5 6 HELIX 9 AA9 ASP A 103 ARG A 123 1 21 HELIX 10 AB1 THR A 141 PHE A 151 1 11 HELIX 11 AB2 GLU A 154 SER A 166 1 13 HELIX 12 AB3 ASN A 171 SER A 183 1 13 HELIX 13 AB4 ASP A 197 ARG A 212 1 16 HELIX 14 AB5 PRO A 214 GLY A 223 1 10 HELIX 15 AB6 LYS A 245 HIS A 258 1 14 HELIX 16 AB7 LEU A 325 GLN A 337 1 13 HELIX 17 AB8 LYS A 339 ASP A 359 1 21 HELIX 18 AB9 ASP A 365 LEU A 372 5 8 HELIX 19 AC1 PRO A 373 HIS A 380 1 8 HELIX 20 AC2 ALA A 386 THR A 409 1 24 HELIX 21 AC3 ASN A 410 MSE A 412 5 3 HELIX 22 AC4 THR A 413 ASN A 428 1 16 HELIX 23 AC5 ASN A 434 GLY A 447 1 14 HELIX 24 AC6 ASP A 449 ALA A 463 1 15 HELIX 25 AC7 ASP A 467 GLN A 476 1 10 HELIX 26 AC8 THR A 479 CYS A 496 1 18 HELIX 27 AC9 ASP A 500 VAL A 507 1 8 HELIX 28 AD1 ASP A 516 GLU A 526 1 11 HELIX 29 AD2 GLY A 533 TYR A 541 1 9 HELIX 30 AD3 GLY A 546 GLY A 558 1 13 HELIX 31 AD4 ASP A 567 HIS A 572 5 6 HELIX 32 AD5 ALA A 582 VAL A 607 1 26 HELIX 33 AD6 ARG A 608 ILE A 615 1 8 HELIX 34 AD7 SER A 641 ASP A 650 5 10 HELIX 35 AD8 ASP A 651 MSE A 663 1 13 HELIX 36 AD9 TYR A 672 GLY A 679 1 8 HELIX 37 AE1 GLY A 679 LYS A 705 1 27 HELIX 38 AE2 ASP A 717 ALA A 723 1 7 HELIX 39 AE3 LYS A 728 HIS A 745 1 18 HELIX 40 AE4 VAL A 750 LYS A 763 1 14 SHEET 1 AA1 2 PHE A 135 GLU A 136 0 SHEET 2 AA1 2 ARG A 139 ILE A 140 -1 O ARG A 139 N GLU A 136 SHEET 1 AA2 3 ILE A 261 PHE A 263 0 SHEET 2 AA2 3 ASN A 307 LYS A 314 -1 O ARG A 311 N CYS A 262 SHEET 3 AA2 3 GLY A 317 GLY A 324 -1 O TYR A 321 N VAL A 310 SHEET 1 AA3 2 ARG A 265 VAL A 269 0 SHEET 2 AA3 2 LYS A 287 ASP A 291 -1 O VAL A 289 N HIS A 267 SHEET 1 AA4 4 VAL A 616 TRP A 617 0 SHEET 2 AA4 4 SER A 621 VAL A 626 -1 O GLU A 623 N VAL A 616 SHEET 3 AA4 4 LYS A 634 SER A 639 -1 O PHE A 638 N ILE A 622 SHEET 4 AA4 4 GLY A 668 ARG A 671 1 O ILE A 670 N VAL A 637 LINK C ILE A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N GLU A 110 1555 1555 1.33 LINK C SER A 183 N MSE A 184 1555 1555 1.34 LINK C MSE A 184 N TYR A 185 1555 1555 1.35 LINK C ARG A 322 N MSE A 323 1555 1555 1.34 LINK C MSE A 323 N GLY A 324 1555 1555 1.31 LINK C GLU A 411 N MSE A 412 1555 1555 1.32 LINK C MSE A 412 N THR A 413 1555 1555 1.33 LINK C GLU A 482 N MSE A 483 1555 1555 1.33 LINK C MSE A 483 N HIS A 484 1555 1555 1.33 LINK C LEU A 597 N MSE A 598 1555 1555 1.33 LINK C MSE A 598 N MSE A 599 1555 1555 1.33 LINK C MSE A 599 N ALA A 600 1555 1555 1.35 LINK C PHE A 662 N MSE A 663 1555 1555 1.32 LINK C MSE A 663 N PRO A 664 1555 1555 1.36 LINK C LYS A 706 N MSE A 707 1555 1555 1.34 LINK C MSE A 707 N SER A 708 1555 1555 1.33 LINK C THR A 725 N MSE A 726 1555 1555 1.34 LINK C MSE A 726 N CYS A 727 1555 1555 1.34 LINK C VAL A 760 N MSE A 761 1555 1555 1.34 LINK C MSE A 761 N LYS A 762 1555 1555 1.34 LINK O6 G B 4 MG MG B 103 1555 1555 2.21 LINK O6 G B 5 MG MG B 103 1555 1555 2.18 LINK O2' G B 7 MG MG B 101 1555 1555 2.27 LINK O6 G B 10 MG MG B 101 1555 1555 2.16 LINK O6 G B 26 MG MG B 101 1555 1555 2.31 LINK O4 U B 27 MG MG B 101 1555 1555 2.63 LINK O4 U B 31 MG MG B 103 1555 1555 2.25 LINK MG MG B 101 O HOH B 219 1555 1555 2.42 LINK MG MG B 101 O HOH B 247 1555 1555 2.54 LINK MG MG B 102 O HOH B 212 1555 1555 2.87 LINK MG MG B 102 O HOH B 235 1555 1555 2.65 LINK MG MG B 102 O HOH B 281 1555 1555 2.72 LINK MG MG B 102 O HOH B 283 1555 1555 2.39 LINK MG MG B 102 O HOH B 286 1555 1555 2.20 LINK MG MG B 103 O HOH B 263 1555 1555 2.83 LINK MG MG B 103 O HOH B 283 1555 1555 2.32 LINK MG MG B 103 O HOH B 286 1555 1555 2.69 CISPEP 1 PHE A 772 PRO A 773 0 5.28 CRYST1 78.434 95.452 125.283 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007982 0.00000