HEADER MEMBRANE PROTEIN 01-NOV-21 7VU1 TITLE CHITOPORIN FROM ESCHERICHIA COLI COMPLEX WITH CHITOHEXAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITOPORIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHIP-III; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: CHIP, YBFM, B0681, JW0667; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OUTER MEMBRANE PROTEIN CHITOPORIN SPECIFIC PORIN, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.SUGINTA,H.S.M.SOYSA,R.AMORNLOETWATTANA,B.VAN DEN BERG REVDAT 3 29-NOV-23 7VU1 1 REMARK REVDAT 2 12-JUL-23 7VU1 1 AUTHOR JRNL REMARK REVDAT 1 09-NOV-22 7VU1 0 JRNL AUTH H.S.M.SOYSA,W.SUGINTA,R.AMORNLOETWATTANA,B.VAN DEN BERG JRNL TITL CHITPORIN FROM ESCHERICHIA COLI COMPLEX WITH CHITOHEXAOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 106893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 5260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.9000 - 4.6900 1.00 3502 174 0.1886 0.1950 REMARK 3 2 4.6900 - 4.0900 1.00 3501 147 0.1777 0.1842 REMARK 3 3 4.0900 - 3.7200 1.00 3441 173 0.1864 0.2256 REMARK 3 4 3.7200 - 3.4500 1.00 3393 214 0.1891 0.2253 REMARK 3 5 3.4500 - 3.2500 1.00 3458 155 0.1856 0.2324 REMARK 3 6 3.2500 - 3.0900 1.00 3417 183 0.1853 0.2561 REMARK 3 7 3.0900 - 2.9500 1.00 3422 166 0.1908 0.2044 REMARK 3 8 2.9500 - 2.8400 1.00 3451 177 0.1858 0.2456 REMARK 3 9 2.8400 - 2.7400 1.00 3402 184 0.1930 0.2408 REMARK 3 10 2.7400 - 2.6500 1.00 3377 174 0.2023 0.2631 REMARK 3 11 2.6500 - 2.5800 1.00 3430 207 0.2032 0.2879 REMARK 3 12 2.5800 - 2.5100 0.99 3376 156 0.2040 0.2359 REMARK 3 13 2.5100 - 2.4500 0.99 3376 217 0.2042 0.2392 REMARK 3 14 2.4500 - 2.3900 1.00 3379 188 0.2036 0.2462 REMARK 3 15 2.3900 - 2.3400 1.00 3404 144 0.2062 0.2567 REMARK 3 16 2.3400 - 2.3000 0.99 3426 165 0.2138 0.2602 REMARK 3 17 2.3000 - 2.2500 1.00 3347 192 0.2204 0.2981 REMARK 3 18 2.2500 - 2.2100 0.99 3398 170 0.2252 0.2877 REMARK 3 19 2.2100 - 2.1700 0.99 3355 162 0.2253 0.2468 REMARK 3 20 2.1700 - 2.1400 0.98 3373 153 0.2393 0.2523 REMARK 3 21 2.1400 - 2.1100 0.99 3384 156 0.2387 0.3049 REMARK 3 22 2.1100 - 2.0800 0.98 3346 160 0.2477 0.2853 REMARK 3 23 2.0800 - 2.0500 0.98 3330 181 0.2451 0.3113 REMARK 3 24 2.0500 - 2.0200 0.98 3278 170 0.2462 0.2750 REMARK 3 25 2.0200 - 1.9900 0.97 3330 188 0.2497 0.2718 REMARK 3 26 1.9900 - 1.9700 0.99 3340 186 0.2688 0.3149 REMARK 3 27 1.9700 - 1.9400 0.98 3317 177 0.2796 0.3207 REMARK 3 28 1.9400 - 1.9200 0.98 3332 190 0.3003 0.3223 REMARK 3 29 1.9200 - 1.9000 0.99 3322 168 0.3119 0.3710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.207 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.081 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7753 REMARK 3 ANGLE : 1.250 10534 REMARK 3 CHIRALITY : 0.068 1094 REMARK 3 PLANARITY : 0.007 1321 REMARK 3 DIHEDRAL : 6.708 5833 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300022572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97883 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 62.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7VTZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30-35% PEG 400, 0.1 M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.27550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 GLU B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA B 364 O HOH B 605 1.46 REMARK 500 OE2 GLU B 78 HH TYR B 300 1.57 REMARK 500 H GLN B 386 O HOH B 615 1.59 REMARK 500 HZ2 LYS B 284 O4 DMU B 503 1.60 REMARK 500 HE ARG A 314 OE1 GLU A 422 1.60 REMARK 500 O HOH A 676 O HOH A 781 1.96 REMARK 500 O HOH B 722 O HOH B 791 1.98 REMARK 500 OH TYR B 218 O HOH B 601 2.06 REMARK 500 O HOH B 692 O HOH B 808 2.08 REMARK 500 NZ LYS B 284 O4 DMU B 503 2.08 REMARK 500 OD1 ASP A 253 O HOH A 601 2.12 REMARK 500 O4 NAG U 4 O5 NAG U 5 2.12 REMARK 500 O HOH B 606 O HOH B 796 2.13 REMARK 500 OD1 ASP A 247 O HOH A 601 2.14 REMARK 500 OG SER B 346 OG SER B 378 2.15 REMARK 500 O HOH B 818 O HOH B 829 2.17 REMARK 500 OG SER A 346 OG SER A 378 2.17 REMARK 500 O HOH A 605 O HOH A 767 2.18 REMARK 500 O HOH A 650 O HOH A 740 2.18 REMARK 500 OE2 GLU B 78 OH TYR B 300 2.18 REMARK 500 OD1 ASP B 253 O HOH B 602 2.18 REMARK 500 OE1 GLU A 373 O HOH A 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 135 CG - SD - CE ANGL. DEV. = 10.3 DEGREES REMARK 500 LYS B 334 CD - CE - NZ ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 36 107.11 -163.39 REMARK 500 GLU A 78 -2.37 81.83 REMARK 500 ALA A 104 89.29 -166.59 REMARK 500 SER A 133 -121.61 -100.01 REMARK 500 THR A 183 -27.97 -140.57 REMARK 500 TYR A 214 -49.45 -137.29 REMARK 500 ASP A 272 25.72 49.38 REMARK 500 VAL A 273 -16.56 -142.18 REMARK 500 ARG A 314 -57.23 67.42 REMARK 500 HIS A 405 37.21 -89.24 REMARK 500 ASP A 421 137.73 -37.85 REMARK 500 GLU B 78 -2.64 76.48 REMARK 500 ALA B 104 89.94 -161.44 REMARK 500 SER B 133 -114.15 -98.94 REMARK 500 THR B 183 -28.45 -141.90 REMARK 500 TYR B 214 -48.53 -136.17 REMARK 500 VAL B 273 -15.27 -147.37 REMARK 500 ALA B 285 62.15 -152.06 REMARK 500 ARG B 314 -54.70 65.96 REMARK 500 HIS B 405 32.84 -84.86 REMARK 500 TRP B 411 5.48 80.91 REMARK 500 ASP B 421 137.73 -37.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DMU A 501 REMARK 610 DMU A 502 REMARK 610 DMU A 503 REMARK 610 C8E A 504 REMARK 610 C8E A 505 REMARK 610 C8E A 506 REMARK 610 C8E A 507 REMARK 610 C8E A 508 REMARK 610 C8E A 509 REMARK 610 C8E A 510 REMARK 610 C8E A 511 REMARK 610 C8E A 512 REMARK 610 DMU B 501 REMARK 610 DMU B 502 REMARK 610 DMU B 503 REMARK 610 C8E B 504 REMARK 610 C8E B 505 REMARK 610 C8E B 506 REMARK 610 C8E B 507 REMARK 610 C8E B 508 REMARK 610 C8E B 509 REMARK 610 C8E B 510 REMARK 610 C8E B 511 REMARK 610 C8E B 512 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 513 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 403 OD1 REMARK 620 2 ASN A 404 O 81.6 REMARK 620 3 ASP A 421 OD1 81.8 79.6 REMARK 620 4 ASP A 421 OD2 92.1 141.8 62.3 REMARK 620 5 HOH A 611 O 102.3 145.3 135.1 72.9 REMARK 620 6 HOH A 725 O 170.5 91.2 90.9 89.8 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 515 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 76 O REMARK 620 2 TYR B 300 OH 105.4 REMARK 620 3 NAG U 4 O6 134.0 120.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 514 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 90 OE2 REMARK 620 2 HOH B 689 O 108.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 513 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 403 OD1 REMARK 620 2 ASN B 404 O 89.9 REMARK 620 3 ASP B 421 OD1 74.4 79.4 REMARK 620 4 ASP B 421 OD2 93.0 131.0 54.7 REMARK 620 5 HOH B 682 O 134.3 69.3 135.3 131.6 REMARK 620 6 HOH B 751 O 95.1 140.8 139.2 87.6 79.9 REMARK 620 7 HOH B 752 O 165.2 89.2 90.9 76.6 58.5 94.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7VTZ RELATED DB: PDB DBREF 7VU1 A 1 436 UNP P75733 CHIP_ECOLI 33 468 DBREF 7VU1 B 1 436 UNP P75733 CHIP_ECOLI 33 468 SEQRES 1 A 436 GLU GLY PHE ILE ASP ASP SER THR LEU THR GLY GLY ILE SEQRES 2 A 436 TYR TYR TRP GLN ARG GLU ARG ASP ARG LYS ASP VAL THR SEQRES 3 A 436 ASP GLY ASP LYS TYR LYS THR ASN LEU SER HIS SER THR SEQRES 4 A 436 TRP ASN ALA ASN LEU ASP PHE GLN SER GLY TYR ALA ALA SEQRES 5 A 436 ASP MET PHE GLY LEU ASP ILE ALA ALA PHE THR ALA ILE SEQRES 6 A 436 GLU MET ALA GLU ASN GLY ASP SER SER HIS PRO ASN GLU SEQRES 7 A 436 ILE ALA PHE SER LYS SER ASN LYS ALA TYR ASP GLU ASP SEQRES 8 A 436 TRP SER GLY ASP LYS SER GLY ILE SER LEU TYR LYS ALA SEQRES 9 A 436 ALA ALA LYS PHE LYS TYR GLY PRO VAL TRP ALA ARG ALA SEQRES 10 A 436 GLY TYR ILE GLN PRO THR GLY GLN THR LEU LEU ALA PRO SEQRES 11 A 436 HIS TRP SER PHE MET PRO GLY THR TYR GLN GLY ALA GLU SEQRES 12 A 436 ALA GLY ALA ASN PHE ASP TYR GLY ASP ALA GLY ALA LEU SEQRES 13 A 436 SER PHE SER TYR MET TRP THR ASN GLU TYR LYS ALA PRO SEQRES 14 A 436 TRP HIS LEU GLU MET ASP GLU PHE TYR GLN ASN ASP LYS SEQRES 15 A 436 THR THR LYS VAL ASP TYR LEU HIS SER PHE GLY ALA LYS SEQRES 16 A 436 TYR ASP PHE LYS ASN ASN PHE VAL LEU GLU ALA ALA PHE SEQRES 17 A 436 GLY GLN ALA GLU GLY TYR ILE ASP GLN TYR PHE ALA LYS SEQRES 18 A 436 ALA SER TYR LYS PHE ASP ILE ALA GLY SER PRO LEU THR SEQRES 19 A 436 THR SER TYR GLN PHE TYR GLY THR ARG ASP LYS VAL ASP SEQRES 20 A 436 ASP ARG SER VAL ASN ASP LEU TYR ASP GLY THR ALA TRP SEQRES 21 A 436 LEU GLN ALA LEU THR PHE GLY TYR ARG ALA ALA ASP VAL SEQRES 22 A 436 VAL ASP LEU ARG LEU GLU GLY THR TRP VAL LYS ALA ASP SEQRES 23 A 436 GLY GLN GLN GLY TYR PHE LEU GLN ARG MET THR PRO THR SEQRES 24 A 436 TYR ALA SER SER ASN GLY ARG LEU ASP ILE TRP TRP ASP SEQRES 25 A 436 ASN ARG SER ASP PHE ASN ALA ASN GLY GLU LYS ALA VAL SEQRES 26 A 436 PHE PHE GLY ALA MET TYR ASP LEU LYS ASN TRP ASN LEU SEQRES 27 A 436 PRO GLY PHE ALA ILE GLY ALA SER TYR VAL TYR ALA TRP SEQRES 28 A 436 ASP ALA LYS PRO ALA THR TRP GLN SER ASN PRO ASP ALA SEQRES 29 A 436 TYR TYR ASP LYS ASN ARG THR ILE GLU GLU SER ALA TYR SEQRES 30 A 436 SER LEU ASP ALA VAL TYR THR ILE GLN ASP GLY ARG ALA SEQRES 31 A 436 LYS GLY THR MET PHE LYS LEU HIS PHE THR GLU TYR ASP SEQRES 32 A 436 ASN HIS SER ASP ILE PRO SER TRP GLY GLY GLY TYR GLY SEQRES 33 A 436 ASN ILE PHE GLN ASP GLU ARG ASP VAL LYS PHE MET VAL SEQRES 34 A 436 ILE ALA PRO PHE THR ILE PHE SEQRES 1 B 436 GLU GLY PHE ILE ASP ASP SER THR LEU THR GLY GLY ILE SEQRES 2 B 436 TYR TYR TRP GLN ARG GLU ARG ASP ARG LYS ASP VAL THR SEQRES 3 B 436 ASP GLY ASP LYS TYR LYS THR ASN LEU SER HIS SER THR SEQRES 4 B 436 TRP ASN ALA ASN LEU ASP PHE GLN SER GLY TYR ALA ALA SEQRES 5 B 436 ASP MET PHE GLY LEU ASP ILE ALA ALA PHE THR ALA ILE SEQRES 6 B 436 GLU MET ALA GLU ASN GLY ASP SER SER HIS PRO ASN GLU SEQRES 7 B 436 ILE ALA PHE SER LYS SER ASN LYS ALA TYR ASP GLU ASP SEQRES 8 B 436 TRP SER GLY ASP LYS SER GLY ILE SER LEU TYR LYS ALA SEQRES 9 B 436 ALA ALA LYS PHE LYS TYR GLY PRO VAL TRP ALA ARG ALA SEQRES 10 B 436 GLY TYR ILE GLN PRO THR GLY GLN THR LEU LEU ALA PRO SEQRES 11 B 436 HIS TRP SER PHE MET PRO GLY THR TYR GLN GLY ALA GLU SEQRES 12 B 436 ALA GLY ALA ASN PHE ASP TYR GLY ASP ALA GLY ALA LEU SEQRES 13 B 436 SER PHE SER TYR MET TRP THR ASN GLU TYR LYS ALA PRO SEQRES 14 B 436 TRP HIS LEU GLU MET ASP GLU PHE TYR GLN ASN ASP LYS SEQRES 15 B 436 THR THR LYS VAL ASP TYR LEU HIS SER PHE GLY ALA LYS SEQRES 16 B 436 TYR ASP PHE LYS ASN ASN PHE VAL LEU GLU ALA ALA PHE SEQRES 17 B 436 GLY GLN ALA GLU GLY TYR ILE ASP GLN TYR PHE ALA LYS SEQRES 18 B 436 ALA SER TYR LYS PHE ASP ILE ALA GLY SER PRO LEU THR SEQRES 19 B 436 THR SER TYR GLN PHE TYR GLY THR ARG ASP LYS VAL ASP SEQRES 20 B 436 ASP ARG SER VAL ASN ASP LEU TYR ASP GLY THR ALA TRP SEQRES 21 B 436 LEU GLN ALA LEU THR PHE GLY TYR ARG ALA ALA ASP VAL SEQRES 22 B 436 VAL ASP LEU ARG LEU GLU GLY THR TRP VAL LYS ALA ASP SEQRES 23 B 436 GLY GLN GLN GLY TYR PHE LEU GLN ARG MET THR PRO THR SEQRES 24 B 436 TYR ALA SER SER ASN GLY ARG LEU ASP ILE TRP TRP ASP SEQRES 25 B 436 ASN ARG SER ASP PHE ASN ALA ASN GLY GLU LYS ALA VAL SEQRES 26 B 436 PHE PHE GLY ALA MET TYR ASP LEU LYS ASN TRP ASN LEU SEQRES 27 B 436 PRO GLY PHE ALA ILE GLY ALA SER TYR VAL TYR ALA TRP SEQRES 28 B 436 ASP ALA LYS PRO ALA THR TRP GLN SER ASN PRO ASP ALA SEQRES 29 B 436 TYR TYR ASP LYS ASN ARG THR ILE GLU GLU SER ALA TYR SEQRES 30 B 436 SER LEU ASP ALA VAL TYR THR ILE GLN ASP GLY ARG ALA SEQRES 31 B 436 LYS GLY THR MET PHE LYS LEU HIS PHE THR GLU TYR ASP SEQRES 32 B 436 ASN HIS SER ASP ILE PRO SER TRP GLY GLY GLY TYR GLY SEQRES 33 B 436 ASN ILE PHE GLN ASP GLU ARG ASP VAL LYS PHE MET VAL SEQRES 34 B 436 ILE ALA PRO PHE THR ILE PHE HET NAG U 1 29 HET NAG U 2 27 HET NAG U 3 27 HET NAG U 4 26 HET NAG U 5 27 HET NAG C 1 24 HET NAG C 2 26 HET NAG C 3 26 HET NAG C 4 26 HET NAG C 5 27 HET DMU A 501 44 HET DMU A 502 62 HET DMU A 503 59 HET C8E A 504 10 HET C8E A 505 16 HET C8E A 506 11 HET C8E A 507 10 HET C8E A 508 9 HET C8E A 509 11 HET C8E A 510 9 HET C8E A 511 7 HET C8E A 512 7 HET MG A 513 1 HET MG A 514 1 HET DMU B 501 47 HET DMU B 502 62 HET DMU B 503 56 HET C8E B 504 26 HET C8E B 505 24 HET C8E B 506 12 HET C8E B 507 12 HET C8E B 508 7 HET C8E B 509 12 HET C8E B 510 9 HET C8E B 511 12 HET C8E B 512 16 HET MG B 513 1 HET MG B 514 1 HET MG B 515 1 HET MG B 516 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM DMU DECYL-BETA-D-MALTOPYRANOSIDE HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN DMU DECYLMALTOSIDE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 5 DMU 6(C22 H42 O11) FORMUL 8 C8E 18(C16 H34 O5) FORMUL 17 MG 6(MG 2+) FORMUL 35 HOH *443(H2 O) HELIX 1 AA1 TYR A 50 ASP A 53 5 4 HELIX 2 AA2 LYS A 86 GLU A 90 5 5 HELIX 3 AA3 GLY A 151 ALA A 153 5 3 HELIX 4 AA4 LYS A 334 ASN A 337 5 4 HELIX 5 AA5 TYR B 50 ASP B 53 5 4 HELIX 6 AA6 LYS B 86 GLU B 90 5 5 HELIX 7 AA7 GLY B 151 ALA B 153 5 3 HELIX 8 AA8 LYS B 334 ASN B 337 5 4 SHEET 1 AA119 THR A 8 LYS A 23 0 SHEET 2 AA119 TYR A 31 GLN A 47 -1 O ASN A 34 N ARG A 20 SHEET 3 AA119 PHE A 55 GLU A 69 -1 O ILE A 59 N PHE A 46 SHEET 4 AA119 GLY A 98 TYR A 110 -1 O SER A 100 N PHE A 62 SHEET 5 AA119 VAL A 113 ILE A 120 -1 O ALA A 115 N PHE A 108 SHEET 6 AA119 THR A 138 ASP A 149 -1 O TYR A 139 N ILE A 120 SHEET 7 AA119 ALA A 155 LYS A 167 -1 O LEU A 156 N PHE A 148 SHEET 8 AA119 LEU A 189 ASP A 197 -1 O LYS A 195 N SER A 157 SHEET 9 AA119 VAL A 203 ALA A 211 -1 O LEU A 204 N TYR A 196 SHEET 10 AA119 ILE A 215 ILE A 228 -1 O GLN A 217 N GLY A 209 SHEET 11 AA119 SER A 231 ASP A 244 -1 O LEU A 233 N PHE A 226 SHEET 12 AA119 ALA A 259 ALA A 270 -1 O ALA A 259 N THR A 242 SHEET 13 AA119 VAL A 274 LYS A 284 -1 O LEU A 276 N TYR A 268 SHEET 14 AA119 LYS A 323 ASP A 332 -1 O PHE A 326 N GLU A 279 SHEET 15 AA119 PHE A 341 ALA A 353 -1 O ILE A 343 N TYR A 331 SHEET 16 AA119 ILE A 372 THR A 384 -1 O GLU A 374 N ALA A 350 SHEET 17 AA119 MET A 394 ASN A 404 -1 O PHE A 395 N TYR A 383 SHEET 18 AA119 GLU A 422 THR A 434 -1 O GLU A 422 N TYR A 402 SHEET 19 AA119 THR A 8 LYS A 23 -1 N GLY A 11 O PHE A 433 SHEET 1 AA2 2 PHE A 81 SER A 82 0 SHEET 2 AA2 2 ASP A 95 LYS A 96 -1 O LYS A 96 N PHE A 81 SHEET 1 AA3 2 LEU A 128 ALA A 129 0 SHEET 2 AA3 2 ASN A 304 GLY A 305 -1 O ASN A 304 N ALA A 129 SHEET 1 AA4 2 PHE A 177 TYR A 178 0 SHEET 2 AA4 2 LYS A 185 VAL A 186 -1 O VAL A 186 N PHE A 177 SHEET 1 AA519 THR B 8 LYS B 23 0 SHEET 2 AA519 TYR B 31 GLN B 47 -1 O ASN B 34 N ARG B 20 SHEET 3 AA519 PHE B 55 GLU B 69 -1 O ILE B 59 N PHE B 46 SHEET 4 AA519 GLY B 98 TYR B 110 -1 O SER B 100 N PHE B 62 SHEET 5 AA519 VAL B 113 ILE B 120 -1 O TYR B 119 N ALA B 104 SHEET 6 AA519 THR B 138 ASP B 149 -1 O TYR B 139 N ILE B 120 SHEET 7 AA519 ALA B 155 LYS B 167 -1 O LEU B 156 N PHE B 148 SHEET 8 AA519 LEU B 189 ASP B 197 -1 O LYS B 195 N SER B 157 SHEET 9 AA519 PHE B 202 ALA B 211 -1 O LEU B 204 N TYR B 196 SHEET 10 AA519 ILE B 215 ILE B 228 -1 O LYS B 221 N GLU B 205 SHEET 11 AA519 SER B 231 ASP B 244 -1 O GLY B 241 N TYR B 218 SHEET 12 AA519 ALA B 259 ALA B 270 -1 O ALA B 259 N THR B 242 SHEET 13 AA519 VAL B 274 LYS B 284 -1 O LEU B 276 N TYR B 268 SHEET 14 AA519 LYS B 323 ASP B 332 -1 O PHE B 326 N GLU B 279 SHEET 15 AA519 PHE B 341 ALA B 353 -1 O ILE B 343 N TYR B 331 SHEET 16 AA519 ILE B 372 THR B 384 -1 O GLU B 374 N ALA B 350 SHEET 17 AA519 MET B 394 ASN B 404 -1 O PHE B 395 N TYR B 383 SHEET 18 AA519 GLU B 422 THR B 434 -1 O GLU B 422 N TYR B 402 SHEET 19 AA519 THR B 8 LYS B 23 -1 N ILE B 13 O ALA B 431 SHEET 1 AA6 2 PHE B 81 SER B 82 0 SHEET 2 AA6 2 ASP B 95 LYS B 96 -1 O LYS B 96 N PHE B 81 SHEET 1 AA7 2 LEU B 128 ALA B 129 0 SHEET 2 AA7 2 ASN B 304 GLY B 305 -1 O ASN B 304 N ALA B 129 SHEET 1 AA8 2 PHE B 177 TYR B 178 0 SHEET 2 AA8 2 LYS B 185 VAL B 186 -1 O VAL B 186 N PHE B 177 LINK O4 NAG U 1 C1 NAG U 2 1555 1555 1.44 LINK O4 NAG U 2 C1 NAG U 3 1555 1555 1.44 LINK O4 NAG U 3 C1 NAG U 4 1555 1555 1.42 LINK O4 NAG U 4 C1 NAG U 5 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.41 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.43 LINK O4 NAG C 4 C1 NAG C 5 1555 1555 1.43 LINK OD1 ASP A 403 MG MG A 513 1555 1555 2.34 LINK O ASN A 404 MG MG A 513 1555 1555 2.54 LINK OD1 ASP A 421 MG MG A 513 1555 1555 2.27 LINK OD2 ASP A 421 MG MG A 513 1555 1555 1.90 LINK O15 C8E A 507 MG MG A 514 1555 1555 2.59 LINK MG MG A 513 O HOH A 611 1555 1555 2.12 LINK MG MG A 513 O HOH A 725 1555 1555 2.26 LINK O PRO B 76 MG MG B 515 1555 1555 2.85 LINK OE2 GLU B 90 MG MG B 514 1555 1555 2.92 LINK OH TYR B 300 MG MG B 515 1555 1555 2.84 LINK OH TYR B 331 MG MG B 516 1555 1555 2.93 LINK OD1 ASP B 403 MG MG B 513 1555 1555 2.31 LINK O ASN B 404 MG MG B 513 1555 1555 2.26 LINK OD1 ASP B 421 MG MG B 513 1555 1555 2.53 LINK OD2 ASP B 421 MG MG B 513 1555 1555 2.15 LINK MG MG B 513 O HOH B 682 1555 1555 2.49 LINK MG MG B 513 O HOH B 751 1555 1555 1.98 LINK MG MG B 513 O HOH B 752 1555 1555 2.53 LINK MG MG B 514 O HOH B 689 1555 1555 2.73 LINK MG MG B 515 O6 NAG U 4 1555 1555 2.82 CISPEP 1 HIS A 75 PRO A 76 0 -2.81 CISPEP 2 HIS B 75 PRO B 76 0 -3.40 CRYST1 94.737 58.551 133.059 90.00 110.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010556 0.000000 0.003990 0.00000 SCALE2 0.000000 0.017079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008035 0.00000