HEADER IMMUNE SYSTEM 01-NOV-21 7VU5 TITLE STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF THE CD28 DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL-SPECIFIC SURFACE GLYCOPROTEIN CD28; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TP44; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CD28, TRANSMEMBRANE DOMAIN, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR H.WU,R.CAO,M.WEN,B.OUYANG REVDAT 4 15-MAY-24 7VU5 1 REMARK REVDAT 3 14-JUN-23 7VU5 1 REMARK REVDAT 2 14-SEP-22 7VU5 1 JRNL REVDAT 1 02-MAR-22 7VU5 0 JRNL AUTH H.WU,R.CAO,M.WEN,H.XUE,B.OUYANG JRNL TITL STRUCTURAL CHARACTERIZATION OF A DIMERIZATION INTERFACE IN JRNL TITL 2 THE CD28 TRANSMEMBRANE DOMAIN. JRNL REF STRUCTURE V. 30 803 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 35397202 JRNL DOI 10.1016/J.STR.2022.03.004 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.44 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025330. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM U-13C; U-15N; 75%-2H REMARK 210 CD28_TM, 25 MM MES, 30 MM DMPC, REMARK 210 60 MM DHPC, 90% H2O/10% D2O; 0.6 REMARK 210 MM [U-13C; U-15N] CD28_TM, 25 MM REMARK 210 MES, 30 MM ACYL CHAIN U-2H DMPC, REMARK 210 60 MM ACYL CHAIN U-2H DHPC, 90% REMARK 210 H2O/10% D2O; 0.6 MM U-15N; U-2H REMARK 210 CD28_TM, 0.6 MM [U-13C] CD28_TM, REMARK 210 25 MM MES, 30 MM ACYL CHAIN U-2H REMARK 210 DMPC, 60 MM ACYL CHAIN U-2H DHPC, REMARK 210 90% H2O/10% D2O; 0.2 MM U-15N; REMARK 210 15%-13C CD28_TM, 25 MM MES, 30 REMARK 210 MM ACYL CHAIN U-2H DMPC, 60 MM REMARK 210 ACYL CHAIN U-2H DHPC, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TROSY-HSQC; TROSY-HNCO; TROSY REMARK 210 -HNCACO; TROSY-HNCOCA; TROSY- REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.44, NMRPIPE, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : 15 REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 149 41.86 -87.98 REMARK 500 1 SER A 150 150.03 64.08 REMARK 500 1 SER A 184 -5.73 71.16 REMARK 500 1 LEU A 186 -157.43 -136.71 REMARK 500 1 LEU A 187 114.32 67.88 REMARK 500 1 SER B 184 -68.79 -104.76 REMARK 500 1 ARG B 185 -86.90 59.84 REMARK 500 1 LEU B 186 24.96 49.69 REMARK 500 2 SER A 184 57.24 -104.50 REMARK 500 2 SER B 150 -49.10 -155.94 REMARK 500 2 LYS B 151 70.25 57.23 REMARK 500 2 ARG B 183 41.70 -86.60 REMARK 500 2 SER B 184 -107.00 -117.02 REMARK 500 2 ARG B 185 74.31 49.64 REMARK 500 2 LEU B 186 -145.71 -100.26 REMARK 500 2 LEU B 187 -68.67 72.30 REMARK 500 3 PRO A 149 -176.11 -64.28 REMARK 500 3 LYS A 151 161.57 61.01 REMARK 500 3 LEU A 186 -86.11 62.67 REMARK 500 3 LEU B 186 137.63 64.22 REMARK 500 3 LEU B 187 95.71 56.32 REMARK 500 4 SER A 150 179.88 55.54 REMARK 500 4 SER A 184 30.42 -92.26 REMARK 500 4 LEU A 187 83.36 56.05 REMARK 500 4 LYS B 151 -52.66 -175.56 REMARK 500 5 SER A 184 163.15 61.29 REMARK 500 5 ARG A 185 78.74 62.30 REMARK 500 5 SER B 150 -56.23 -120.75 REMARK 500 5 SER B 184 33.73 -95.17 REMARK 500 5 LEU B 186 -71.55 -75.31 REMARK 500 5 LEU B 187 -92.43 55.44 REMARK 500 6 SER A 150 -178.98 53.74 REMARK 500 6 ARG A 183 -84.22 -58.36 REMARK 500 6 SER A 184 27.11 46.11 REMARK 500 6 LEU A 186 68.93 -113.34 REMARK 500 6 LEU A 187 41.45 -144.07 REMARK 500 6 SER B 150 -73.17 -168.54 REMARK 500 6 LYS B 151 86.34 46.89 REMARK 500 6 ARG B 185 167.54 59.39 REMARK 500 6 LEU B 186 -62.47 -105.18 REMARK 500 7 SER A 150 94.47 51.47 REMARK 500 7 ARG A 183 70.52 -114.11 REMARK 500 7 ARG A 185 -152.88 -157.84 REMARK 500 7 LEU A 187 -71.26 68.54 REMARK 500 7 LYS B 151 61.66 -118.60 REMARK 500 7 SER B 184 -77.00 -55.00 REMARK 500 7 ARG B 185 77.17 48.61 REMARK 500 8 SER A 184 134.95 65.59 REMARK 500 8 ARG A 185 85.43 56.49 REMARK 500 8 LEU A 186 43.76 -86.96 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50912 RELATED DB: BMRB DBREF 7VU5 A 148 188 UNP P10747 CD28_HUMAN 148 188 DBREF 7VU5 B 148 188 UNP P10747 CD28_HUMAN 148 188 SEQADV 7VU5 PHE A 165 UNP P10747 CYS 165 CONFLICT SEQADV 7VU5 PHE B 165 UNP P10747 CYS 165 CONFLICT SEQRES 1 A 41 GLY PRO SER LYS PRO PHE TRP VAL LEU VAL VAL VAL GLY SEQRES 2 A 41 GLY VAL LEU ALA PHE TYR SER LEU LEU VAL THR VAL ALA SEQRES 3 A 41 PHE ILE ILE PHE TRP VAL ARG SER LYS ARG SER ARG LEU SEQRES 4 A 41 LEU HIS SEQRES 1 B 41 GLY PRO SER LYS PRO PHE TRP VAL LEU VAL VAL VAL GLY SEQRES 2 B 41 GLY VAL LEU ALA PHE TYR SER LEU LEU VAL THR VAL ALA SEQRES 3 B 41 PHE ILE ILE PHE TRP VAL ARG SER LYS ARG SER ARG LEU SEQRES 4 B 41 LEU HIS HELIX 1 AA1 PRO A 152 ARG A 183 1 32 HELIX 2 AA2 LYS B 151 ARG B 183 1 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1