HEADER CELL CYCLE 04-NOV-21 7VV8 TITLE CRYSTAL STRUCTURE OF HRASQ61L(GMPPNP-BOUND) IN COMPLEX WITH THE RAS- TITLE 2 BINDING DOMAIN(RBD) OF SIN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: TORC2 SUBUNIT MAPKAP1,MITOGEN-ACTIVATED PROTEIN KINASE 2- COMPND 11 ASSOCIATED PROTEIN 1,STRESS-ACTIVATED MAP KINASE-INTERACTING PROTEIN COMPND 12 1,SAPK-INTERACTING PROTEIN 1,MSIN1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MAPKAP1, MIP1, SIN1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, RBD, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.ZHENG,C.ZHOU REVDAT 2 29-NOV-23 7VV8 1 REMARK REVDAT 1 18-MAY-22 7VV8 0 JRNL AUTH Y.ZHENG,L.DING,X.MENG,M.POTTER,A.L.KEARNEY,J.ZHANG,J.SUN, JRNL AUTH 2 D.E.JAMES,G.YANG,C.ZHOU JRNL TITL STRUCTURAL INSIGHTS INTO RAS REGULATION BY SIN1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 90119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35522713 JRNL DOI 10.1073/PNAS.2119990119 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC1_4392 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 3746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4900 - 5.0900 0.93 2612 122 0.1872 0.2099 REMARK 3 2 5.0900 - 4.0400 0.94 2605 124 0.1489 0.1894 REMARK 3 3 4.0400 - 3.5300 0.96 2668 125 0.1548 0.1762 REMARK 3 4 3.5300 - 3.2100 0.97 2693 134 0.1650 0.1800 REMARK 3 5 3.2100 - 2.9800 0.99 2717 143 0.1717 0.1746 REMARK 3 6 2.9800 - 2.8100 1.00 2813 102 0.1811 0.1683 REMARK 3 7 2.8100 - 2.6700 1.00 2752 142 0.1834 0.1878 REMARK 3 8 2.6700 - 2.5500 1.00 2788 117 0.1718 0.2233 REMARK 3 9 2.5500 - 2.4500 1.00 2734 168 0.1832 0.1909 REMARK 3 10 2.4500 - 2.3700 1.00 2759 150 0.1779 0.1752 REMARK 3 11 2.3700 - 2.2900 1.00 2730 145 0.1753 0.1618 REMARK 3 12 2.2900 - 2.2300 1.00 2815 127 0.1721 0.2191 REMARK 3 13 2.2300 - 2.1700 1.00 2752 139 0.1733 0.2433 REMARK 3 14 2.1700 - 2.1200 1.00 2747 161 0.1740 0.2048 REMARK 3 15 2.1200 - 2.0700 1.00 2745 125 0.1757 0.2203 REMARK 3 16 2.0700 - 2.0200 1.00 2802 140 0.1718 0.1829 REMARK 3 17 2.0200 - 1.9800 1.00 2771 121 0.1737 0.2255 REMARK 3 18 1.9800 - 1.9500 1.00 2729 176 0.1802 0.1995 REMARK 3 19 1.9500 - 1.9100 0.99 2715 162 0.1785 0.2215 REMARK 3 20 1.9100 - 1.8800 0.99 2770 152 0.1850 0.2180 REMARK 3 21 1.8800 - 1.8500 0.99 2716 163 0.2038 0.2366 REMARK 3 22 1.8500 - 1.8200 0.98 2744 117 0.2131 0.2642 REMARK 3 23 1.8200 - 1.7900 0.99 2751 116 0.2052 0.2070 REMARK 3 24 1.7900 - 1.7700 0.99 2756 129 0.2062 0.2322 REMARK 3 25 1.7700 - 1.7400 1.00 2740 148 0.2202 0.2319 REMARK 3 26 1.7400 - 1.7200 1.00 2726 152 0.2148 0.2543 REMARK 3 27 1.7200 - 1.7000 1.00 2760 146 0.2253 0.2261 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1542 34.1610 17.2213 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.2646 REMARK 3 T33: 0.1652 T12: -0.0815 REMARK 3 T13: 0.0077 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 5.6849 L22: 1.2164 REMARK 3 L33: 1.5461 L12: 1.5865 REMARK 3 L13: -2.3248 L23: -1.0308 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: 0.1234 S13: 0.1954 REMARK 3 S21: -0.0378 S22: -0.0188 S23: -0.1320 REMARK 3 S31: -0.1815 S32: 0.3102 S33: -0.0371 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0404 36.7771 31.8865 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.2128 REMARK 3 T33: 0.1522 T12: -0.2466 REMARK 3 T13: -0.0045 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 0.8774 L22: 0.2900 REMARK 3 L33: 0.0632 L12: 0.2247 REMARK 3 L13: 0.1040 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: -0.1638 S13: 0.2027 REMARK 3 S21: 0.2410 S22: -0.1501 S23: 0.0542 REMARK 3 S31: -0.1720 S32: 0.0564 S33: -0.0696 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7470 36.9792 21.6062 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.3281 REMARK 3 T33: 0.1639 T12: -0.1016 REMARK 3 T13: -0.0123 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 3.4395 L22: 0.6022 REMARK 3 L33: 0.4704 L12: -0.4760 REMARK 3 L13: -0.1207 L23: 0.1019 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0163 S13: 0.0176 REMARK 3 S21: 0.0128 S22: -0.0807 S23: -0.0162 REMARK 3 S31: -0.0138 S32: 0.2942 S33: 0.0284 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.9619 33.8202 15.0015 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.4155 REMARK 3 T33: 0.2081 T12: -0.0903 REMARK 3 T13: -0.0355 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 5.9130 L22: 1.6059 REMARK 3 L33: 4.0255 L12: -2.1759 REMARK 3 L13: -3.5950 L23: 1.5910 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.0576 S13: 0.1394 REMARK 3 S21: -0.0315 S22: -0.0743 S23: 0.2846 REMARK 3 S31: -0.1486 S32: -0.3007 S33: -0.0039 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9784 23.5154 20.8484 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.2030 REMARK 3 T33: 0.1759 T12: -0.1177 REMARK 3 T13: -0.0315 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.7281 L22: 0.7085 REMARK 3 L33: 2.1279 L12: 0.2696 REMARK 3 L13: -0.9473 L23: -0.9808 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.2617 S13: -0.1986 REMARK 3 S21: -0.2031 S22: 0.0466 S23: 0.0875 REMARK 3 S31: 0.2645 S32: -0.2689 S33: 0.0143 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6527 22.1816 17.4885 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.1865 REMARK 3 T33: 0.1554 T12: -0.0628 REMARK 3 T13: -0.0101 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.6456 L22: 1.7688 REMARK 3 L33: 8.9154 L12: -0.1877 REMARK 3 L13: -1.5366 L23: 3.2668 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.1371 S13: -0.1472 REMARK 3 S21: -0.3410 S22: -0.0494 S23: -0.0379 REMARK 3 S31: -0.4065 S32: 0.0913 S33: 0.0599 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0403 21.4121 28.3774 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.2086 REMARK 3 T33: 0.1902 T12: -0.0769 REMARK 3 T13: -0.0516 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 0.5644 L22: 0.8593 REMARK 3 L33: 0.7626 L12: 0.0263 REMARK 3 L13: 0.0902 L23: 0.0651 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: -0.1287 S13: -0.1424 REMARK 3 S21: 0.2140 S22: -0.1428 S23: -0.1796 REMARK 3 S31: 0.1953 S32: 0.2954 S33: -0.0193 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 277 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6707 47.3602 18.9692 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.1719 REMARK 3 T33: 0.1819 T12: -0.0875 REMARK 3 T13: -0.0301 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 4.9997 L22: 0.8113 REMARK 3 L33: 1.8053 L12: -0.3528 REMARK 3 L13: -0.9528 L23: -0.1145 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.0641 S13: -0.1876 REMARK 3 S21: 0.0483 S22: 0.0077 S23: 0.2363 REMARK 3 S31: 0.1020 S32: -0.2204 S33: 0.0070 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 286 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8992 46.7798 22.3788 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.1661 REMARK 3 T33: 0.1489 T12: -0.1028 REMARK 3 T13: -0.0084 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 3.9519 L22: 1.8219 REMARK 3 L33: 1.5383 L12: -0.2478 REMARK 3 L13: -0.9184 L23: 0.1916 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: -0.1777 S13: 0.0136 REMARK 3 S21: 0.1462 S22: 0.0125 S23: -0.0456 REMARK 3 S31: -0.1156 S32: -0.0089 S33: -0.0481 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 295 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.5397 55.1791 25.6018 REMARK 3 T TENSOR REMARK 3 T11: 0.2941 T22: 0.3921 REMARK 3 T33: 0.3281 T12: -0.0083 REMARK 3 T13: 0.0909 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 4.5405 L22: 2.2164 REMARK 3 L33: 3.2714 L12: 2.2337 REMARK 3 L13: 0.7718 L23: 2.1684 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.1291 S13: 0.0094 REMARK 3 S21: 0.1587 S22: -0.0228 S23: 0.1496 REMARK 3 S31: -0.0816 S32: -0.2204 S33: -0.0186 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 301 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4562 51.9896 29.1475 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.3042 REMARK 3 T33: 0.1542 T12: -0.0952 REMARK 3 T13: 0.0154 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.3256 L22: 3.5552 REMARK 3 L33: 2.1910 L12: -1.3945 REMARK 3 L13: 0.3097 L23: -0.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: -0.2863 S13: -0.0029 REMARK 3 S21: 0.3800 S22: 0.1111 S23: 0.0921 REMARK 3 S31: -0.0187 S32: -0.0724 S33: -0.0229 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 314 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4836 57.7972 26.7733 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.2403 REMARK 3 T33: 0.1822 T12: -0.1244 REMARK 3 T13: -0.0551 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.0831 L22: 2.0844 REMARK 3 L33: 2.1732 L12: -0.4654 REMARK 3 L13: 0.1116 L23: -0.4106 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.2937 S13: 0.0262 REMARK 3 S21: 0.3372 S22: 0.1392 S23: -0.1798 REMARK 3 S31: -0.0359 S32: 0.1249 S33: -0.0115 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 328 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9497 62.6347 19.7597 REMARK 3 T TENSOR REMARK 3 T11: 0.3868 T22: 0.1924 REMARK 3 T33: 0.2245 T12: -0.0651 REMARK 3 T13: -0.0000 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.2638 L22: 1.2488 REMARK 3 L33: 1.2823 L12: 0.6615 REMARK 3 L13: -0.4586 L23: 0.0734 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: -0.0850 S13: 0.2504 REMARK 3 S21: 0.0663 S22: 0.0083 S23: 0.0507 REMARK 3 S31: -0.2027 S32: -0.0382 S33: -0.0854 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 341 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5824 58.0659 17.8323 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.2347 REMARK 3 T33: 0.2392 T12: -0.0099 REMARK 3 T13: -0.0079 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.1504 L22: 6.2607 REMARK 3 L33: 3.7824 L12: -0.5265 REMARK 3 L13: -0.5993 L23: 1.4771 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.0131 S13: 0.1660 REMARK 3 S21: 0.0035 S22: -0.0387 S23: 0.2812 REMARK 3 S31: -0.2048 S32: -0.2969 S33: -0.0037 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 348 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7090 55.4141 20.6323 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.1873 REMARK 3 T33: 0.1717 T12: -0.0921 REMARK 3 T13: -0.0320 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.2873 L22: 5.1195 REMARK 3 L33: 4.4035 L12: 1.8440 REMARK 3 L13: -0.4259 L23: 1.5482 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: 0.0592 S13: -0.2441 REMARK 3 S21: 0.1787 S22: 0.0232 S23: -0.3011 REMARK 3 S31: 0.0074 S32: 0.2398 S33: -0.1303 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 354 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9247 59.9062 21.6258 REMARK 3 T TENSOR REMARK 3 T11: 0.3106 T22: 0.3510 REMARK 3 T33: 0.3072 T12: -0.0431 REMARK 3 T13: -0.0398 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 3.6934 L22: 2.7497 REMARK 3 L33: 4.0520 L12: 3.1807 REMARK 3 L13: 3.8685 L23: 3.3341 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: 0.0592 S13: -0.0138 REMARK 3 S21: 0.1161 S22: 0.0574 S23: -0.1528 REMARK 3 S31: -0.0524 S32: 0.3382 S33: -0.1095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 26.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.07592 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75260 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG20000, 0.1M SODIM CITRATE. PH 5.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.43033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.86067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.14550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.57583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.71517 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.43033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.86067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 103.57583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 62.14550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.71517 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 274 REMARK 465 SER C 275 REMARK 465 LYS C 276 REMARK 465 GLN C 316 REMARK 465 LYS C 317 REMARK 465 VAL C 318 REMARK 465 SER C 319 REMARK 465 ALA C 359 REMARK 465 ASP C 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 445 O HOH C 643 1.98 REMARK 500 O HOH C 687 O HOH C 694 2.04 REMARK 500 O HOH C 670 O HOH C 682 2.04 REMARK 500 O HOH C 648 O HOH C 683 2.05 REMARK 500 O HOH C 645 O HOH C 685 2.06 REMARK 500 O HOH A 402 O HOH A 413 2.07 REMARK 500 O HOH A 446 O HOH A 472 2.09 REMARK 500 O HOH A 318 O HOH A 359 2.18 REMARK 500 O HOH C 624 O HOH C 657 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 413 O HOH A 413 9555 2.02 REMARK 500 O HOH A 369 O HOH C 638 12565 2.15 REMARK 500 O HOH A 360 O HOH A 402 9555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -64.59 -94.58 REMARK 500 LYS A 117 32.35 71.81 REMARK 500 ARG A 149 -0.03 74.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 477 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 478 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH C 701 DISTANCE = 6.23 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.0 REMARK 620 3 GNP A 201 O3G 173.9 91.8 REMARK 620 4 GNP A 201 O2B 93.2 173.9 91.7 REMARK 620 5 HOH A 305 O 84.6 87.0 92.1 87.9 REMARK 620 6 HOH A 371 O 91.0 94.4 92.5 90.5 175.2 REMARK 620 N 1 2 3 4 5 DBREF 7VV8 A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 7VV8 C 274 360 UNP Q9BPZ7 SIN1_HUMAN 274 360 SEQADV 7VV8 SER A 0 UNP P01112 EXPRESSION TAG SEQADV 7VV8 LEU A 61 UNP P01112 GLN 61 VARIANT SEQRES 1 A 167 SER MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 167 LEU LEU ASP ILE LEU ASP THR ALA GLY LEU GLU GLU TYR SEQRES 6 A 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 A 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 A 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 A 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 C 87 THR SER LYS GLU SER LEU PHE VAL ARG ILE ASN ALA ALA SEQRES 2 C 87 HIS GLY PHE SER LEU ILE GLN VAL ASP ASN THR LYS VAL SEQRES 3 C 87 THR MET LYS GLU ILE LEU LEU LYS ALA VAL LYS ARG ARG SEQRES 4 C 87 LYS GLY SER GLN LYS VAL SER GLY PRO GLN TYR ARG LEU SEQRES 5 C 87 GLU LYS GLN SER GLU PRO ASN VAL ALA VAL ASP LEU ASP SEQRES 6 C 87 SER THR LEU GLU SER GLN SER ALA TRP GLU PHE CYS LEU SEQRES 7 C 87 VAL ARG GLU ASN SER SER ARG ALA ASP HET GNP A 201 32 HET MG A 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *279(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 LEU A 61 ALA A 66 5 6 HELIX 3 AA3 MET A 67 GLY A 75 1 9 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 THR C 300 GLY C 314 1 15 HELIX 9 AA9 THR C 340 SER C 345 1 6 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 GLY C 288 VAL C 294 0 SHEET 2 AA2 4 LEU C 279 ALA C 285 -1 N VAL C 281 O ILE C 292 SHEET 3 AA2 4 GLU C 348 ARG C 353 1 O PHE C 349 N ASN C 284 SHEET 4 AA2 4 TYR C 323 LYS C 327 -1 N GLU C 326 O CYS C 350 LINK OG SER A 17 MG MG A 202 1555 1555 2.11 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.08 LINK O3G GNP A 201 MG MG A 202 1555 1555 2.01 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.06 LINK MG MG A 202 O HOH A 305 1555 1555 2.14 LINK MG MG A 202 O HOH A 371 1555 1555 2.06 CRYST1 101.316 101.316 124.291 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009870 0.005699 0.000000 0.00000 SCALE2 0.000000 0.011397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008046 0.00000