HEADER CELL CYCLE 06-NOV-21 7VVG TITLE CRYSTAL STRUCTURE OF HRASG12V(GMPPNP-BOUND) IN COMPLEX WITH THE RAS- TITLE 2 BINDING DOMAIN(RBD) OF SIN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TARGET OF RAPAMYCIN COMPLEX 2 SUBUNIT MAPKAP1; COMPND 9 CHAIN: C; COMPND 10 SYNONYM: TORC2 SUBUNIT MAPKAP1,MITOGEN-ACTIVATED PROTEIN KINASE 2- COMPND 11 ASSOCIATED PROTEIN 1,STRESS-ACTIVATED MAP KINASE-INTERACTING PROTEIN COMPND 12 1,SAPK-INTERACTING PROTEIN 1,MSIN1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MAPKAP1, MIP1, SIN1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS, RBD, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.ZHENG,C.ZHOU REVDAT 2 29-NOV-23 7VVG 1 REMARK REVDAT 1 18-MAY-22 7VVG 0 JRNL AUTH Y.ZHENG,L.DING,X.MENG,M.POTTER,A.L.KEARNEY,J.ZHANG,J.SUN, JRNL AUTH 2 D.E.JAMES,G.YANG,C.ZHOU JRNL TITL STRUCTURAL INSIGHTS INTO RAS REGULATION BY SIN1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 90119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35522713 JRNL DOI 10.1073/PNAS.2119990119 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20RC1_4392 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 3767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4200 - 5.1000 1.00 2760 131 0.1877 0.2064 REMARK 3 2 5.1000 - 4.0500 1.00 2751 128 0.1440 0.1657 REMARK 3 3 4.0500 - 3.5400 1.00 2769 134 0.1466 0.1936 REMARK 3 4 3.5400 - 3.2100 1.00 2764 134 0.1511 0.2070 REMARK 3 5 3.2100 - 2.9800 1.00 2734 146 0.1633 0.1454 REMARK 3 6 2.9800 - 2.8100 1.00 2769 105 0.1788 0.1574 REMARK 3 7 2.8100 - 2.6700 1.00 2770 136 0.1803 0.2045 REMARK 3 8 2.6700 - 2.5500 1.00 2786 117 0.1789 0.2031 REMARK 3 9 2.5500 - 2.4500 1.00 2716 170 0.1806 0.2024 REMARK 3 10 2.4500 - 2.3700 1.00 2750 145 0.1779 0.1747 REMARK 3 11 2.3700 - 2.2900 1.00 2724 140 0.1749 0.1974 REMARK 3 12 2.2900 - 2.2300 1.00 2785 127 0.1800 0.2359 REMARK 3 13 2.2300 - 2.1700 1.00 2742 135 0.1823 0.2145 REMARK 3 14 2.1700 - 2.1200 1.00 2758 161 0.1798 0.2099 REMARK 3 15 2.1200 - 2.0700 1.00 2733 135 0.1933 0.2596 REMARK 3 16 2.0700 - 2.0200 1.00 2749 126 0.2017 0.1918 REMARK 3 17 2.0200 - 1.9800 1.00 2756 131 0.2029 0.2484 REMARK 3 18 1.9800 - 1.9500 1.00 2734 164 0.2037 0.2565 REMARK 3 19 1.9500 - 1.9100 1.00 2724 164 0.2039 0.2320 REMARK 3 20 1.9100 - 1.8800 1.00 2730 163 0.2083 0.2158 REMARK 3 21 1.8800 - 1.8500 1.00 2751 148 0.2197 0.2506 REMARK 3 22 1.8500 - 1.8200 1.00 2720 136 0.2251 0.2462 REMARK 3 23 1.8200 - 1.7900 1.00 2819 114 0.2336 0.2234 REMARK 3 24 1.7900 - 1.7700 1.00 2713 128 0.2553 0.2332 REMARK 3 25 1.7700 - 1.7400 1.00 2739 149 0.2729 0.3122 REMARK 3 26 1.7400 - 1.7200 1.00 2751 158 0.2865 0.2936 REMARK 3 27 1.7200 - 1.7000 1.00 2780 142 0.2914 0.3178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8042 34.3742 24.5017 REMARK 3 T TENSOR REMARK 3 T11: 0.1688 T22: 0.2379 REMARK 3 T33: 0.1995 T12: -0.0901 REMARK 3 T13: -0.0225 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 2.2993 L22: 1.3577 REMARK 3 L33: 2.7158 L12: -0.1320 REMARK 3 L13: -0.2147 L23: 0.3034 REMARK 3 S TENSOR REMARK 3 S11: 0.2137 S12: 0.0281 S13: -0.0011 REMARK 3 S21: 0.1497 S22: -0.1878 S23: -0.1786 REMARK 3 S31: -0.3422 S32: 0.3605 S33: -0.0531 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9871 38.8939 33.7533 REMARK 3 T TENSOR REMARK 3 T11: 0.3149 T22: 0.2424 REMARK 3 T33: 0.2541 T12: -0.1381 REMARK 3 T13: -0.0090 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 8.1443 L22: 1.3781 REMARK 3 L33: 5.4946 L12: -2.0170 REMARK 3 L13: 4.3064 L23: -1.1505 REMARK 3 S TENSOR REMARK 3 S11: -0.2084 S12: -0.5040 S13: 0.4932 REMARK 3 S21: 0.5419 S22: -0.0568 S23: -0.1129 REMARK 3 S31: -0.4911 S32: -0.2583 S33: 0.1941 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9134 36.9343 21.6451 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.2923 REMARK 3 T33: 0.1862 T12: -0.0892 REMARK 3 T13: -0.0152 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 7.2750 L22: 1.9173 REMARK 3 L33: 1.9152 L12: -2.2240 REMARK 3 L13: -0.6315 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: -0.0550 S13: 0.0618 REMARK 3 S21: 0.0273 S22: -0.0798 S23: -0.1160 REMARK 3 S31: -0.0438 S32: 0.3396 S33: 0.0323 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0039 33.4194 14.9315 REMARK 3 T TENSOR REMARK 3 T11: 0.3283 T22: 0.5203 REMARK 3 T33: 0.3114 T12: -0.0437 REMARK 3 T13: -0.0542 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 7.3122 L22: 7.2726 REMARK 3 L33: 7.9717 L12: -5.4999 REMARK 3 L13: -5.8756 L23: 5.6139 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: -0.3321 S13: -0.0519 REMARK 3 S21: -0.0501 S22: -0.2423 S23: 0.8423 REMARK 3 S31: -0.4373 S32: -0.6997 S33: 0.2223 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0195 23.3241 21.1151 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1981 REMARK 3 T33: 0.2180 T12: -0.0803 REMARK 3 T13: -0.0233 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 2.0620 L22: 2.5382 REMARK 3 L33: 4.7803 L12: 1.2902 REMARK 3 L13: -1.6991 L23: -2.8054 REMARK 3 S TENSOR REMARK 3 S11: -0.1400 S12: 0.2303 S13: -0.2966 REMARK 3 S21: -0.2939 S22: 0.1102 S23: 0.0911 REMARK 3 S31: 0.4756 S32: -0.3246 S33: -0.0397 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9005 21.3770 27.5362 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.1807 REMARK 3 T33: 0.2264 T12: -0.0853 REMARK 3 T13: -0.0383 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.7728 L22: 3.2804 REMARK 3 L33: 0.8520 L12: 1.1287 REMARK 3 L13: 0.0857 L23: -1.6401 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0167 S13: -0.2948 REMARK 3 S21: -0.0159 S22: -0.0509 S23: -0.0362 REMARK 3 S31: 0.5786 S32: -0.0604 S33: 0.0887 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3254 21.7574 26.3366 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: 0.2390 REMARK 3 T33: 0.2512 T12: -0.0341 REMARK 3 T13: -0.0463 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 1.2935 L22: 2.4348 REMARK 3 L33: 2.6228 L12: 0.6018 REMARK 3 L13: -0.5323 L23: -1.0566 REMARK 3 S TENSOR REMARK 3 S11: 0.1169 S12: -0.1494 S13: -0.1447 REMARK 3 S21: 0.0570 S22: -0.2543 S23: -0.3190 REMARK 3 S31: 0.1748 S32: 0.3984 S33: 0.0416 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 277 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0500 46.8484 20.2086 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: 0.1778 REMARK 3 T33: 0.1696 T12: -0.0656 REMARK 3 T13: -0.0055 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 4.8886 L22: 4.4226 REMARK 3 L33: 5.1355 L12: -2.9301 REMARK 3 L13: -1.8741 L23: -1.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0907 S12: 0.0005 S13: -0.0568 REMARK 3 S21: 0.1528 S22: -0.0774 S23: 0.2101 REMARK 3 S31: -0.1824 S32: -0.1192 S33: -0.0371 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 294 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1997 54.2962 25.2112 REMARK 3 T TENSOR REMARK 3 T11: 0.2507 T22: 0.3529 REMARK 3 T33: 0.3647 T12: 0.0160 REMARK 3 T13: 0.1022 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 6.7801 L22: 2.5598 REMARK 3 L33: 9.7403 L12: 2.1470 REMARK 3 L13: 0.1974 L23: 4.3320 REMARK 3 S TENSOR REMARK 3 S11: -0.3574 S12: -0.1567 S13: -0.1765 REMARK 3 S21: 0.7386 S22: -0.0535 S23: 1.0363 REMARK 3 S31: -0.1986 S32: -0.1014 S33: 0.1563 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 301 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5052 51.9013 28.9989 REMARK 3 T TENSOR REMARK 3 T11: 0.3414 T22: 0.3163 REMARK 3 T33: 0.2238 T12: -0.0911 REMARK 3 T13: 0.0152 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 7.5587 L22: 3.9108 REMARK 3 L33: 4.1710 L12: -5.2381 REMARK 3 L13: 1.3507 L23: -0.4484 REMARK 3 S TENSOR REMARK 3 S11: -0.2894 S12: -0.4566 S13: 0.0513 REMARK 3 S21: 0.8668 S22: 0.1615 S23: -0.0151 REMARK 3 S31: -0.0275 S32: -0.2110 S33: 0.1586 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 314 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5701 55.3725 33.9471 REMARK 3 T TENSOR REMARK 3 T11: 1.1520 T22: 0.8238 REMARK 3 T33: 0.4860 T12: -0.0753 REMARK 3 T13: -0.1391 T23: -0.1085 REMARK 3 L TENSOR REMARK 3 L11: 1.2611 L22: 2.8951 REMARK 3 L33: 0.2575 L12: 1.0334 REMARK 3 L13: 0.3730 L23: 0.6365 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: -0.9638 S13: 0.2978 REMARK 3 S21: 1.3945 S22: 0.4423 S23: 0.0765 REMARK 3 S31: 0.0267 S32: 0.0443 S33: -0.0937 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 323 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3598 59.0651 22.0061 REMARK 3 T TENSOR REMARK 3 T11: 0.3312 T22: 0.2049 REMARK 3 T33: 0.2161 T12: -0.0859 REMARK 3 T13: 0.0044 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 4.8587 L22: 7.1860 REMARK 3 L33: 5.9126 L12: 4.3710 REMARK 3 L13: -0.3320 L23: 0.4092 REMARK 3 S TENSOR REMARK 3 S11: 0.3344 S12: -0.1115 S13: 0.2082 REMARK 3 S21: 0.2003 S22: -0.1414 S23: 0.0529 REMARK 3 S31: 0.0594 S32: -0.0704 S33: -0.2837 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 328 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9615 62.4709 19.5871 REMARK 3 T TENSOR REMARK 3 T11: 0.3647 T22: 0.1981 REMARK 3 T33: 0.2615 T12: -0.0630 REMARK 3 T13: -0.0077 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 4.3424 L22: 2.9722 REMARK 3 L33: 1.3941 L12: 1.7449 REMARK 3 L13: -0.1023 L23: 0.1419 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: -0.1641 S13: 0.5078 REMARK 3 S21: -0.0100 S22: 0.0369 S23: 0.0366 REMARK 3 S31: -0.3533 S32: 0.0845 S33: -0.1824 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 341 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5642 57.9090 17.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.2661 REMARK 3 T33: 0.3308 T12: -0.0045 REMARK 3 T13: -0.0024 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.4932 L22: 1.9398 REMARK 3 L33: 7.4861 L12: 0.7781 REMARK 3 L13: -0.0833 L23: 2.6340 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.0054 S13: 0.3396 REMARK 3 S21: -0.1775 S22: -0.1647 S23: 0.6520 REMARK 3 S31: -0.2627 S32: -0.6857 S33: 0.0601 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 348 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8060 55.2869 20.7073 REMARK 3 T TENSOR REMARK 3 T11: 0.3610 T22: 0.1831 REMARK 3 T33: 0.2339 T12: -0.0896 REMARK 3 T13: -0.0622 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 6.5975 L22: 5.9650 REMARK 3 L33: 6.0258 L12: 1.6620 REMARK 3 L13: -4.7754 L23: 2.0627 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.1595 S13: -0.0698 REMARK 3 S21: 0.5592 S22: -0.1500 S23: -0.3788 REMARK 3 S31: 0.1789 S32: 0.1084 S33: -0.1085 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 354 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9465 59.7276 21.4584 REMARK 3 T TENSOR REMARK 3 T11: 0.3932 T22: 0.4446 REMARK 3 T33: 0.3387 T12: -0.0142 REMARK 3 T13: -0.0260 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 9.5913 L22: 4.0978 REMARK 3 L33: 6.0512 L12: 5.3327 REMARK 3 L13: 6.2792 L23: 4.9311 REMARK 3 S TENSOR REMARK 3 S11: -0.4193 S12: 0.2489 S13: -0.0932 REMARK 3 S21: 0.6884 S22: 0.0895 S23: -0.4948 REMARK 3 S31: -0.1710 S32: 1.5125 S33: 0.2297 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025462. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.08135 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000, PH 5.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.40267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.80533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.10400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 103.50667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.70133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.40267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.80533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 103.50667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 62.10400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 20.70133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 274 REMARK 465 SER C 275 REMARK 465 LYS C 276 REMARK 465 GLN C 316 REMARK 465 LYS C 317 REMARK 465 VAL C 318 REMARK 465 SER C 319 REMARK 465 GLY C 320 REMARK 465 ALA C 359 REMARK 465 ASP C 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -65.48 -95.07 REMARK 500 ASP A 105 -8.69 69.87 REMARK 500 ASN C 332 7.68 81.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 507 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 508 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH C 697 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.8 REMARK 620 3 GNP A 201 O1G 174.6 92.3 REMARK 620 4 GNP A 201 O1B 94.2 176.4 90.6 REMARK 620 5 HOH A 322 O 87.2 88.1 90.5 89.7 REMARK 620 6 HOH A 361 O 88.9 93.4 93.5 88.5 175.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7VV8 RELATED DB: PDB DBREF 7VVG A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 7VVG C 274 360 UNP Q9BPZ7 SIN1_HUMAN 274 360 SEQADV 7VVG VAL A 12 UNP P01112 GLY 12 VARIANT SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA VAL GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 C 87 THR SER LYS GLU SER LEU PHE VAL ARG ILE ASN ALA ALA SEQRES 2 C 87 HIS GLY PHE SER LEU ILE GLN VAL ASP ASN THR LYS VAL SEQRES 3 C 87 THR MET LYS GLU ILE LEU LEU LYS ALA VAL LYS ARG ARG SEQRES 4 C 87 LYS GLY SER GLN LYS VAL SER GLY PRO GLN TYR ARG LEU SEQRES 5 C 87 GLU LYS GLN SER GLU PRO ASN VAL ALA VAL ASP LEU ASP SEQRES 6 C 87 SER THR LEU GLU SER GLN SER ALA TRP GLU PHE CYS LEU SEQRES 7 C 87 VAL ARG GLU ASN SER SER ARG ALA ASP HET GNP A 201 32 HET MG A 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP C10 H17 N6 O13 P3 FORMUL 4 MG MG 2+ FORMUL 5 HOH *305(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 ALA A 66 5 6 HELIX 3 AA3 MET A 67 GLY A 75 1 9 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 GLN A 165 1 15 HELIX 8 AA8 THR C 300 GLY C 314 1 15 HELIX 9 AA9 THR C 340 SER C 345 1 6 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 GLU A 3 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 4 GLY C 288 VAL C 294 0 SHEET 2 AA2 4 LEU C 279 ALA C 285 -1 N VAL C 281 O ILE C 292 SHEET 3 AA2 4 GLU C 348 ARG C 353 1 O PHE C 349 N ASN C 284 SHEET 4 AA2 4 TYR C 323 LYS C 327 -1 N GLU C 326 O CYS C 350 LINK OG SER A 17 MG MG A 202 1555 1555 2.07 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.12 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.04 LINK O1B GNP A 201 MG MG A 202 1555 1555 2.13 LINK MG MG A 202 O HOH A 322 1555 1555 2.10 LINK MG MG A 202 O HOH A 361 1555 1555 2.14 CRYST1 101.032 101.032 124.208 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009898 0.005715 0.000000 0.00000 SCALE2 0.000000 0.011429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008051 0.00000