HEADER HYDROLASE 12-NOV-21 7VX6 TITLE OXA-58 CRYSTAL STRUCTURE OF ACYLATED MEROPENEM COMPLEX 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: BLAOXA-58, BLA-OXA-58, BLA-OXA58; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCOLD I KEYWDS OXA, MULTI-DRUG RESISTANCE, COMPLEX, DEGRADATION, ANTIBIOTIC, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SAINO,T.SUGIYABU,M.MIYANO REVDAT 2 29-NOV-23 7VX6 1 REMARK REVDAT 1 23-NOV-22 7VX6 0 JRNL AUTH H.SAINO,T.SUGIYABU,M.MIYANO JRNL TITL OXA-58 CRYSTAL STRUCTURE OF ACYLATED MEROPENEM COMPLEX 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.SAINO,T.SUGIYABU,G.UENO,M.YAMAMOTO,Y.ISHII,M.MIYANO REMARK 1 TITL CRYSTAL STRUCTURE OF OXA-58 WITH THE SUBSTRATE-BINDING CLEFT REMARK 1 TITL 2 IN A CLOSED STATE: INSIGHTS INTO THE MOBILITY AND STABILITY REMARK 1 TITL 3 OF THE OXA-58 STRUCTURE. REMARK 1 REF PLOS ONE V. 10 45869 2015 REMARK 1 REFN ESSN 1932-6203 REMARK 1 PMID 26701320 REMARK 1 DOI 10.1371/JOURNAL.PONE.0145869 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.170 REMARK 3 FREE R VALUE TEST SET COUNT : 3980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1200 - 4.6100 0.93 2591 201 0.1248 0.1671 REMARK 3 2 4.6100 - 3.6600 0.93 2573 186 0.1058 0.1433 REMARK 3 3 3.6600 - 3.2000 0.93 2596 202 0.1266 0.1651 REMARK 3 4 3.2000 - 2.9100 0.93 2539 197 0.1483 0.1681 REMARK 3 5 2.9100 - 2.7000 0.93 2588 198 0.1530 0.1758 REMARK 3 6 2.7000 - 2.5400 0.93 2603 196 0.1555 0.1603 REMARK 3 7 2.5400 - 2.4100 0.92 2574 208 0.1567 0.1912 REMARK 3 8 2.4100 - 2.3100 0.93 2584 201 0.1707 0.1998 REMARK 3 9 2.3100 - 2.2200 0.93 2516 196 0.1803 0.1883 REMARK 3 10 2.2200 - 2.1400 0.93 2595 198 0.1753 0.1975 REMARK 3 11 2.1400 - 2.0700 0.92 2582 208 0.1809 0.1850 REMARK 3 12 2.0700 - 2.0200 0.93 2595 189 0.1887 0.1824 REMARK 3 13 2.0200 - 1.9600 0.93 2487 194 0.1823 0.2130 REMARK 3 14 1.9600 - 1.9100 0.93 2635 200 0.1946 0.2478 REMARK 3 15 1.9100 - 1.8700 0.93 2598 202 0.1901 0.2392 REMARK 3 16 1.8700 - 1.8300 0.93 2588 192 0.2170 0.2451 REMARK 3 17 1.8300 - 1.7900 0.93 2538 194 0.2277 0.2663 REMARK 3 18 1.7900 - 1.7600 0.93 2624 206 0.2427 0.2522 REMARK 3 19 1.7600 - 1.7300 0.93 2558 202 0.2480 0.2906 REMARK 3 20 1.7300 - 1.7000 0.92 2587 205 0.3029 0.3386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1998 REMARK 3 ANGLE : 0.887 2707 REMARK 3 CHIRALITY : 0.050 294 REMARK 3 PLANARITY : 0.006 343 REMARK 3 DIHEDRAL : 12.691 362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI-FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 1.0 REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 24.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 88.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7VVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.60 M LISO4, 0.1 M HEPES-NA (PH7.5), REMARK 280 MEROPENEM, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.62000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.71992 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.86667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 37.62000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 21.71992 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.86667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 37.62000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 21.71992 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.86667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.43983 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 79.73333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 43.43983 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 79.73333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 43.43983 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 CYS A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 CYS A 19 REMARK 465 ALA A 20 REMARK 465 GLU A 21 REMARK 465 HIS A 22 REMARK 465 SER A 23 REMARK 465 MET A 24 REMARK 465 SER A 25 REMARK 465 ARG A 26 REMARK 465 ALA A 27 REMARK 465 LYS A 28 REMARK 465 THR A 29 REMARK 465 SER A 30 REMARK 465 THR A 31 REMARK 465 ILE A 32 REMARK 465 PRO A 33 REMARK 465 GLN A 34 REMARK 465 VAL A 35 REMARK 465 ASN A 36 REMARK 465 ASN A 37 REMARK 465 SER A 38 REMARK 465 ILE A 39 REMARK 465 ILE A 40 REMARK 465 ASP A 41 REMARK 465 GLN A 42 REMARK 465 ASN A 43 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OAU DWZ A 303 O HOH A 401 1.81 REMARK 500 O TRP A 107 O HOH A 402 1.83 REMARK 500 N ASN A 49 O HOH A 403 1.83 REMARK 500 O HOH A 414 O HOH A 561 1.83 REMARK 500 OH TYR A 279 O HOH A 404 1.88 REMARK 500 CB ASP A 269 O HOH A 404 1.88 REMARK 500 O13 MER A 302 O HOH A 401 1.91 REMARK 500 O HOH A 551 O HOH A 581 1.91 REMARK 500 O HOH A 531 O HOH A 562 1.91 REMARK 500 O HOH A 535 O HOH A 592 1.93 REMARK 500 NE2 GLN A 128 O MET A 206 1.94 REMARK 500 O HOH A 577 O HOH A 597 1.95 REMARK 500 O HOH A 646 O HOH A 648 2.02 REMARK 500 O HOH A 496 O HOH A 599 2.03 REMARK 500 O GLN A 45 O HOH A 403 2.04 REMARK 500 NZ LYS A 110 O HOH A 405 2.10 REMARK 500 O HOH A 421 O HOH A 531 2.10 REMARK 500 O HOH A 575 O HOH A 619 2.13 REMARK 500 CA HIS A 97 O HOH A 531 2.13 REMARK 500 O HOH A 401 O HOH A 439 2.13 REMARK 500 O ILE A 161 O HOH A 406 2.14 REMARK 500 NZ LYS A 110 O HOH A 407 2.14 REMARK 500 CG ASP A 269 O HOH A 404 2.15 REMARK 500 O HOH A 560 O HOH A 627 2.15 REMARK 500 OD2 ASP A 269 O HOH A 404 2.15 REMARK 500 O HOH A 588 O HOH A 634 2.16 REMARK 500 O HOH A 445 O HOH A 608 2.16 REMARK 500 OE2 GLU A 239 O HOH A 408 2.17 REMARK 500 O HOH A 508 O HOH A 632 2.18 REMARK 500 O HOH A 637 O HOH A 641 2.18 REMARK 500 O HOH A 554 O HOH A 598 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 407 O HOH A 546 2755 2.04 REMARK 500 O HOH A 458 O HOH A 578 5645 2.10 REMARK 500 O ALA A 256 NE2 GLN A 265 2755 2.16 REMARK 500 O HOH A 640 O HOH A 642 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 36.78 -80.97 REMARK 500 GLN A 63 -22.49 -147.70 REMARK 500 ALA A 82 -134.60 52.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 642 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 643 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 644 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 645 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 646 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 647 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 648 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 649 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A 650 DISTANCE = 8.95 ANGSTROMS REMARK 525 HOH A 651 DISTANCE = 9.38 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 12.35 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 12.67 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7VVI RELATED DB: PDB REMARK 900 RELATED ID: 7VX3 RELATED DB: PDB REMARK 900 RELATED ID: 5BOH RELATED DB: PDB DBREF 7VX6 A 1 280 UNP Q2TR58 Q2TR58_ACIBA 1 280 SEQRES 1 A 280 MET LYS LEU LEU LYS ILE LEU SER LEU VAL CYS LEU SER SEQRES 2 A 280 ILE SER ILE GLY ALA CYS ALA GLU HIS SER MET SER ARG SEQRES 3 A 280 ALA LYS THR SER THR ILE PRO GLN VAL ASN ASN SER ILE SEQRES 4 A 280 ILE ASP GLN ASN VAL GLN ALA LEU PHE ASN GLU ILE SER SEQRES 5 A 280 ALA ASP ALA VAL PHE VAL THR TYR ASP GLY GLN ASN ILE SEQRES 6 A 280 LYS LYS TYR GLY THR HIS LEU ASP ARG ALA LYS THR ALA SEQRES 7 A 280 TYR ILE PRO ALA SER THR PHE KCX ILE ALA ASN ALA LEU SEQRES 8 A 280 ILE GLY LEU GLU ASN HIS LYS ALA THR SER THR GLU ILE SEQRES 9 A 280 PHE LYS TRP ASP GLY LYS PRO ARG PHE PHE LYS ALA TRP SEQRES 10 A 280 ASP LYS ASP PHE THR LEU GLY GLU ALA MET GLN ALA SER SEQRES 11 A 280 THR VAL PRO VAL TYR GLN GLU LEU ALA ARG ARG ILE GLY SEQRES 12 A 280 PRO SER LEU MET GLN SER GLU LEU GLN ARG ILE GLY TYR SEQRES 13 A 280 GLY ASN MET GLN ILE GLY THR GLU VAL ASP GLN PHE TRP SEQRES 14 A 280 LEU LYS GLY PRO LEU THR ILE THR PRO ILE GLN GLU VAL SEQRES 15 A 280 LYS PHE VAL TYR ASP LEU ALA GLN GLY GLN LEU PRO PHE SEQRES 16 A 280 LYS PRO GLU VAL GLN GLN GLN VAL LYS GLU MET LEU TYR SEQRES 17 A 280 VAL GLU ARG ARG GLY GLU ASN ARG LEU TYR ALA LYS SER SEQRES 18 A 280 GLY TRP GLY MET ALA VAL ASP PRO GLN VAL GLY TRP TYR SEQRES 19 A 280 VAL GLY PHE VAL GLU LYS ALA ASP GLY GLN VAL VAL ALA SEQRES 20 A 280 PHE ALA LEU ASN MET GLN MET LYS ALA GLY ASP ASP ILE SEQRES 21 A 280 ALA LEU ARG LYS GLN LEU SER LEU ASP VAL LEU ASP LYS SEQRES 22 A 280 LEU GLY VAL PHE HIS TYR LEU MODRES 7VX6 KCX A 86 LYS MODIFIED RESIDUE HET KCX A 86 12 HET SO4 A 301 5 HET MER A 302 26 HET DWZ A 303 26 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM MER (4R,5S)-3-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN-3- HETNAM 2 MER YL]SULFANYL}-5-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]-4- HETNAM 3 MER METHYL-4,5-D IHYDRO-1H-PYRROLE-2-CARBOXYLIC ACID HETNAM DWZ (2S,3R,4S)-4-{[(3S,5S)-5-(DIMETHYLCARBAMOYL)PYRROLIDIN- HETNAM 2 DWZ 3-YL]SULFANYL}-2-[(2S,3R)-3-HYDROXY-1-OXOBUTAN-2-YL]- HETNAM 3 DWZ 3-METHYL-3,4-DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID HETSYN MER MEROPENEM, BOUND FORM HETSYN DWZ MEROPENEM, BOUND FORM FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SO4 O4 S 2- FORMUL 3 MER C17 H27 N3 O5 S FORMUL 4 DWZ C17 H27 N3 O5 S FORMUL 5 HOH *253(H2 O) HELIX 1 AA1 VAL A 44 ASN A 49 1 6 HELIX 2 AA2 HIS A 71 THR A 77 5 7 HELIX 3 AA3 PRO A 81 THR A 84 5 4 HELIX 4 AA4 PHE A 85 ASN A 96 1 12 HELIX 5 AA5 PHE A 114 ASP A 118 5 5 HELIX 6 AA6 THR A 122 SER A 130 1 9 HELIX 7 AA7 THR A 131 GLY A 143 1 13 HELIX 8 AA8 GLY A 143 ILE A 154 1 12 HELIX 9 AA9 GLN A 167 GLY A 172 1 6 HELIX 10 AB1 THR A 177 GLY A 191 1 15 HELIX 11 AB2 LYS A 196 LEU A 207 1 12 HELIX 12 AB3 ALA A 261 LEU A 274 1 14 SHEET 1 AA1 6 ILE A 65 GLY A 69 0 SHEET 2 AA1 6 ALA A 55 TYR A 60 -1 N PHE A 57 O TYR A 68 SHEET 3 AA1 6 VAL A 245 MET A 254 -1 O ALA A 247 N TYR A 60 SHEET 4 AA1 6 GLN A 230 GLU A 239 -1 N TYR A 234 O LEU A 250 SHEET 5 AA1 6 ASN A 215 GLY A 224 -1 N ARG A 216 O GLU A 239 SHEET 6 AA1 6 TYR A 208 ARG A 212 -1 N ARG A 212 O ASN A 215 LINK OG SER A 83 C1 AMER A 302 1555 1555 1.43 LINK OG SER A 83 CAABDWZ A 303 1555 1555 1.39 LINK C PHE A 85 N KCX A 86 1555 1555 1.33 LINK C KCX A 86 N ILE A 87 1555 1555 1.33 CISPEP 1 GLY A 172 PRO A 173 0 4.09 CISPEP 2 ASP A 228 PRO A 229 0 1.82 CRYST1 75.240 75.240 119.600 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013291 0.007673 0.000000 0.00000 SCALE2 0.000000 0.015347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008361 0.00000