HEADER VIRAL PROTEIN 13-NOV-21 7VXO TITLE STRUCTURE OF THE C-TERMINAL HEAD DOMAIN OF THE FOWL ADENOVIRUS TITLE 2 SEROTYPE 4 (FADV-4) FIBRE-2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER-2; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: FIBER-2 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOWL AVIADENOVIRUS 4; SOURCE 3 ORGANISM_TAXID: 130663; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS TRIMER, CELLULAR RECEPTOR BINDING DOMAIN, TISSUE TROPISM, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.P.SONG,Q.WEI REVDAT 2 29-NOV-23 7VXO 1 REMARK REVDAT 1 16-NOV-22 7VXO 0 JRNL AUTH Y.P.SONG,Q.WEI JRNL TITL STRUCTURE OF THE C-TERMINAL HEAD DOMAIN OF THE FOWL JRNL TITL 2 ADENOVIRUS SEROTYPE 4 (FADV-4) FIBRE-2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 24554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1274 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1761 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1340 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.180 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1543 ; 0.014 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1315 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2122 ; 1.752 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3081 ; 1.080 ; 1.620 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 7.323 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;37.006 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 207 ;11.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;18.424 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 211 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1748 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7VXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300024194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 18.30 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VTW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH6.5, 25% W/V POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 60.30300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 30.15150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 52.22393 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 318 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 620 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 630 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 635 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 675 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 GLY C 2 REMARK 465 SER C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 HIS C 10 REMARK 465 SER C 11 REMARK 465 SER C 12 REMARK 465 GLY C 13 REMARK 465 LEU C 14 REMARK 465 VAL C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 GLY C 18 REMARK 465 SER C 19 REMARK 465 HIS C 20 REMARK 465 MET C 21 REMARK 465 ALA C 22 REMARK 465 SER C 23 REMARK 465 MET C 24 REMARK 465 THR C 25 REMARK 465 GLY C 26 REMARK 465 GLY C 27 REMARK 465 GLN C 28 REMARK 465 GLN C 29 REMARK 465 MET C 30 REMARK 465 GLY C 31 REMARK 465 ARG C 32 REMARK 465 GLY C 33 REMARK 465 SER C 34 REMARK 465 GLU C 35 REMARK 465 SER C 36 REMARK 465 GLU C 37 REMARK 465 LEU C 38 REMARK 465 SER C 39 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 323 O HOH C 459 1.01 REMARK 500 O HOH C 619 O HOH C 639 1.01 REMARK 500 O HOH C 500 O HOH C 550 1.02 REMARK 500 O HOH C 372 O HOH C 413 1.04 REMARK 500 O HOH C 422 O HOH C 555 1.06 REMARK 500 O HOH C 544 O HOH C 574 1.07 REMARK 500 O HOH C 341 O HOH C 590 1.16 REMARK 500 O HOH C 332 O HOH C 549 1.16 REMARK 500 O HOH C 335 O HOH C 434 1.17 REMARK 500 O HOH C 349 O HOH C 476 1.18 REMARK 500 O HOH C 388 O HOH C 437 1.23 REMARK 500 O HOH C 321 O HOH C 382 1.23 REMARK 500 O HOH C 490 O HOH C 512 1.23 REMARK 500 O HOH C 427 O HOH C 447 1.23 REMARK 500 O HOH C 645 O HOH C 648 1.23 REMARK 500 O HOH C 354 O HOH C 384 1.25 REMARK 500 O HOH C 482 O HOH C 534 1.25 REMARK 500 O HOH C 440 O HOH C 567 1.29 REMARK 500 O HOH C 494 O HOH C 501 1.31 REMARK 500 O HOH C 328 O HOH C 516 1.31 REMARK 500 O HOH C 485 O HOH C 508 1.34 REMARK 500 O HOH C 493 O HOH C 561 1.37 REMARK 500 O HOH C 528 O HOH C 559 1.40 REMARK 500 O HOH C 415 O HOH C 551 1.42 REMARK 500 O HOH C 322 O HOH C 522 1.42 REMARK 500 O HOH C 312 O HOH C 443 1.47 REMARK 500 O HOH C 580 O HOH C 595 1.50 REMARK 500 O HOH C 511 O HOH C 541 1.50 REMARK 500 O HOH C 313 O HOH C 462 1.51 REMARK 500 OD1 ASN C 158 O HOH C 301 1.57 REMARK 500 O HOH C 505 O HOH C 623 1.60 REMARK 500 O HOH C 334 O HOH C 343 1.68 REMARK 500 ND2 ASN C 158 O HOH C 302 1.71 REMARK 500 O HOH C 317 O HOH C 531 1.73 REMARK 500 O HOH C 522 O HOH C 638 1.74 REMARK 500 O HOH C 331 O HOH C 505 1.75 REMARK 500 O HOH C 446 O HOH C 582 1.76 REMARK 500 O HOH C 316 O HOH C 397 1.76 REMARK 500 NZ LYS C 108 O HOH C 303 1.78 REMARK 500 CB VAL C 188 O HOH C 570 1.79 REMARK 500 O HOH C 385 O HOH C 439 1.80 REMARK 500 O HOH C 410 O HOH C 531 1.82 REMARK 500 O HOH C 615 O HOH C 660 1.83 REMARK 500 O HOH C 507 O HOH C 596 1.84 REMARK 500 O HOH C 386 O HOH C 579 1.84 REMARK 500 O HOH C 336 O HOH C 562 1.86 REMARK 500 O HOH C 498 O HOH C 517 1.88 REMARK 500 O HOH C 516 O HOH C 577 1.92 REMARK 500 O HOH C 374 O HOH C 528 1.93 REMARK 500 O HOH C 367 O HOH C 557 1.96 REMARK 500 REMARK 500 THIS ENTRY HAS 76 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 593 O HOH C 602 4555 1.70 REMARK 500 O HOH C 379 O HOH C 591 4555 1.71 REMARK 500 O HOH C 401 O HOH C 510 2655 1.73 REMARK 500 O HOH C 606 O HOH C 642 3555 1.91 REMARK 500 O HOH C 514 O HOH C 568 3665 1.98 REMARK 500 O HOH C 678 O HOH C 678 4555 1.98 REMARK 500 O HOH C 514 O HOH C 621 3665 1.98 REMARK 500 CD2 LEU C 229 O SER C 231 3665 2.18 REMARK 500 O HOH C 566 O HOH C 606 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 147 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 VAL C 149 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 55 73.69 -109.13 REMARK 500 CYS C 121 79.69 -156.61 REMARK 500 SER C 213 -60.70 -172.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 147 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 681 DISTANCE = 6.45 ANGSTROMS DBREF1 7VXO C 39 238 UNP A0A1B1SKZ0_9ADEN DBREF2 7VXO C A0A1B1SKZ0 280 479 SEQADV 7VXO MET C 1 UNP A0A1B1SKZ INITIATING METHIONINE SEQADV 7VXO GLY C 2 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 3 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 4 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO HIS C 5 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO HIS C 6 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO HIS C 7 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO HIS C 8 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO HIS C 9 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO HIS C 10 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 11 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 12 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLY C 13 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO LEU C 14 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO VAL C 15 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO PRO C 16 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO ARG C 17 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLY C 18 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 19 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO HIS C 20 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO MET C 21 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO ALA C 22 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 23 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO MET C 24 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO THR C 25 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLY C 26 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLY C 27 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLN C 28 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLN C 29 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO MET C 30 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLY C 31 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO ARG C 32 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLY C 33 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 34 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLU C 35 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO SER C 36 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO GLU C 37 UNP A0A1B1SKZ EXPRESSION TAG SEQADV 7VXO LEU C 38 UNP A0A1B1SKZ EXPRESSION TAG SEQRES 1 C 238 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 238 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 C 238 GLY GLN GLN MET GLY ARG GLY SER GLU SER GLU LEU SER SEQRES 4 C 238 THR PRO ILE ALA THR PHE VAL SER GLY SER PRO SER LEU SEQRES 5 C 238 ASN THR TYR ASN ALA THR THR VAL ASN SER SER ALA ASN SEQRES 6 C 238 ALA PHE SER CYS ALA TYR TYR LEU GLN GLN TRP ASN ILE SEQRES 7 C 238 GLN GLY LEU LEU VAL THR SER LEU TYR LEU LYS LEU ASP SEQRES 8 C 238 SER ALA THR MET GLY ASN ARG PRO GLY ASP LEU ASN SER SEQRES 9 C 238 ALA ASN ALA LYS TRP PHE THR PHE TRP VAL SER ALA TYR SEQRES 10 C 238 LEU GLN GLN CYS ASN PRO SER GLY ILE GLN ALA GLY THR SEQRES 11 C 238 VAL SER PRO SER THR ALA THR LEU THR ASP PHE GLU PRO SEQRES 12 C 238 MET ALA ASN ARG SER VAL THR SER PRO TRP THR TYR SER SEQRES 13 C 238 ALA ASN GLY TYR TYR GLU PRO SER ILE GLY GLU PHE GLN SEQRES 14 C 238 VAL PHE SER PRO VAL VAL THR GLY ALA TRP ASN PRO GLY SEQRES 15 C 238 ASN ILE GLY ILE ARG VAL LEU PRO VAL PRO VAL SER ALA SEQRES 16 C 238 SER GLY GLU ARG TYR THR LEU LEU CYS TYR SER LEU GLN SEQRES 17 C 238 CYS THR ASN ALA SER ILE PHE ASN PRO ASN ASN SER GLY SEQRES 18 C 238 THR MET ILE VAL GLY PRO VAL LEU TYR SER CYS PRO ALA SEQRES 19 C 238 ALA SER LEU PRO FORMUL 2 HOH *381(H2 O) HELIX 1 AA1 ASP C 101 ASN C 106 1 6 HELIX 2 AA2 THR C 137 GLU C 142 5 6 SHEET 1 AA1 8 THR C 130 SER C 132 0 SHEET 2 AA1 8 ILE C 42 GLY C 48 -1 N THR C 44 O SER C 132 SHEET 3 AA1 8 ALA C 66 ILE C 78 -1 O LEU C 73 N SER C 47 SHEET 4 AA1 8 ALA C 57 ASN C 61 -1 N THR C 59 O PHE C 67 SHEET 5 AA1 8 TRP C 109 VAL C 114 -1 O THR C 111 N VAL C 60 SHEET 6 AA1 8 GLU C 198 CYS C 209 -1 O LEU C 207 N PHE C 110 SHEET 7 AA1 8 ILE C 184 ALA C 195 -1 N LEU C 189 O CYS C 204 SHEET 8 AA1 8 GLU C 167 PHE C 171 -1 N PHE C 171 O ILE C 184 SHEET 1 AA2 9 TRP C 153 THR C 154 0 SHEET 2 AA2 9 ILE C 184 ALA C 195 1 O SER C 194 N TRP C 153 SHEET 3 AA2 9 GLU C 198 CYS C 209 -1 O CYS C 204 N LEU C 189 SHEET 4 AA2 9 TRP C 109 VAL C 114 -1 N PHE C 110 O LEU C 207 SHEET 5 AA2 9 ALA C 57 ASN C 61 -1 N VAL C 60 O THR C 111 SHEET 6 AA2 9 ALA C 66 ILE C 78 -1 O PHE C 67 N THR C 59 SHEET 7 AA2 9 LEU C 81 ASP C 91 -1 O SER C 85 N GLN C 74 SHEET 8 AA2 9 GLY C 221 PRO C 233 -1 O VAL C 228 N LEU C 86 SHEET 9 AA2 9 VAL C 174 GLY C 177 -1 N VAL C 174 O ILE C 224 CISPEP 1 SER C 132 PRO C 133 0 -8.92 CISPEP 2 GLY C 226 PRO C 227 0 -3.26 CRYST1 60.303 60.303 92.095 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016583 0.009574 0.000000 0.00000 SCALE2 0.000000 0.019148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010858 0.00000