HEADER HYDROLASE 13-NOV-21 7VXR TITLE CRYSTAL STRUCTURE OF BPSL1038 FROM BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: BPSL1038; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI K96243; SOURCE 3 ORGANISM_TAXID: 272560; SOURCE 4 STRAIN: K96243; SOURCE 5 GENE: BPSL1038; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, CAS2, DSST MOTIF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHAIBULLAH,M.MOHD-SHARIF,K.L.HO,M.FIRDAUS-RAIH,S.NATHAN,R.MOHAMED, AUTHOR 2 A.K.TEH,J.WATERMAN,C.L.NG REVDAT 2 20-SEP-23 7VXR 1 TITLE JRNL REVDAT 1 16-AUG-23 7VXR 0 JRNL AUTH S.SHAIBULLAH,N.SHUHAIMI,D.S.KER,N.MOHD-SHARIF,K.L.HO, JRNL AUTH 2 A.H.TEH,J.WATERMAN,T.H.TANG,R.R.WONG,S.NATHAN,R.MOHAMED, JRNL AUTH 3 M.J.NG,S.Y.FUNG,M.A.JONET,M.FIRDAUS-RAIH,C.L.NG JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF BURKHOLDERIA JRNL TITL 2 PSEUDOMALLEI BPSL1038 REVEAL A CAS-2/VAPD NUCLEASE JRNL TITL 3 SUB-FAMILY. JRNL REF COMMUN BIOL V. 6 920 2023 JRNL REFN ESSN 2399-3642 JRNL PMID 37684342 JRNL DOI 10.1038/S42003-023-05265-4 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 31997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.1840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1472 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.438 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1583 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1448 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2178 ; 2.051 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3341 ; 1.359 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 6.028 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;40.462 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;14.215 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 8.241 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1860 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3031 ; 5.602 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 45 ;53.612 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3106 ;21.712 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 86 B 2 86 4146 0.200 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -13 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6667 47.8632 17.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.0201 T22: 0.0123 REMARK 3 T33: 0.0003 T12: 0.0005 REMARK 3 T13: -0.0002 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0299 L22: 0.0211 REMARK 3 L33: 0.0370 L12: -0.0021 REMARK 3 L13: -0.0080 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: 0.0050 S13: 0.0010 REMARK 3 S21: -0.0049 S22: -0.0012 S23: -0.0020 REMARK 3 S31: -0.0062 S32: 0.0007 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 87 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2814 35.8311 7.7785 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: 0.0124 REMARK 3 T33: 0.0003 T12: 0.0007 REMARK 3 T13: -0.0007 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0292 L22: 0.0164 REMARK 3 L33: 0.0008 L12: -0.0074 REMARK 3 L13: 0.0042 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0038 S13: -0.0016 REMARK 3 S21: -0.0033 S22: -0.0006 S23: 0.0020 REMARK 3 S31: -0.0002 S32: 0.0002 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7VXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 28.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7VXT REMARK 200 REMARK 200 REMARK: PLATE FORM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 1.8-2M REMARK 280 SODIUM FORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.36500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.36500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.81500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.81500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.36500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.68000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.81500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.36500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.68000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.81500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 151 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 GLU A 88 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLU B 88 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -13 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA B 2 O HOH B 201 1.95 REMARK 500 ND1 HIS A -12 O HOH A 101 1.95 REMARK 500 O HOH B 233 O HOH B 267 2.09 REMARK 500 O HOH A 138 O HOH A 157 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 MET A 40 CG - SD - CE ANGL. DEV. = 12.1 DEGREES REMARK 500 MET B 40 CG - SD - CE ANGL. DEV. = 16.6 DEGREES REMARK 500 MET B 40 CG - SD - CE ANGL. DEV. = -17.0 DEGREES REMARK 500 ASP B 75 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 292 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 58 OH REMARK 620 2 ASP B 50 OD1 34.6 REMARK 620 3 THR B 84 OG1 6.4 32.1 REMARK 620 4 HOH B 214 O 36.8 2.9 34.5 REMARK 620 N 1 2 3 DBREF 7VXR A 1 88 UNP Q63W52 Q63W52_BURPS 1 88 DBREF 7VXR B 1 88 UNP Q63W52 Q63W52_BURPS 1 88 SEQADV 7VXR MET A -19 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR GLY A -18 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER A -17 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER A -16 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS A -15 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS A -14 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS A -13 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS A -12 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS A -11 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS A -10 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER A -9 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER A -8 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR GLY A -7 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR LEU A -6 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR VAL A -5 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR PRO A -4 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR ARG A -3 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR GLY A -2 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER A -1 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS A 0 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR MET B -19 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR GLY B -18 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER B -17 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER B -16 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS B -15 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS B -14 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS B -13 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS B -12 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS B -11 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS B -10 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER B -9 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER B -8 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR GLY B -7 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR LEU B -6 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR VAL B -5 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR PRO B -4 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR ARG B -3 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR GLY B -2 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR SER B -1 UNP Q63W52 EXPRESSION TAG SEQADV 7VXR HIS B 0 UNP Q63W52 EXPRESSION TAG SEQRES 1 A 108 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 108 LEU VAL PRO ARG GLY SER HIS MET ALA GLY ASN LEU VAL SEQRES 3 A 108 ILE VAL CYS ARG ASP GLN ASP ALA ASP ALA PHE ASP GLN SEQRES 4 A 108 LEU MET GLN GLU TYR GLY SER PHE GLN THR ARG LEU SER SEQRES 5 A 108 SER THR ALA TRP TYR LEU ASN MET ASN ILE VAL PRO GLU SEQRES 6 A 108 THR LEU GLN GLU ASP ILE LEU GLU ARG VAL GLY LYS TYR SEQRES 7 A 108 THR THR LEU TYR ILE PHE GLU ALA THR SER VAL THR TYR SEQRES 8 A 108 ASN THR ILE ASP SER ASN ALA ALA GLU THR LEU SER THR SEQRES 9 A 108 LEU PHE GLY GLU SEQRES 1 B 108 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 108 LEU VAL PRO ARG GLY SER HIS MET ALA GLY ASN LEU VAL SEQRES 3 B 108 ILE VAL CYS ARG ASP GLN ASP ALA ASP ALA PHE ASP GLN SEQRES 4 B 108 LEU MET GLN GLU TYR GLY SER PHE GLN THR ARG LEU SER SEQRES 5 B 108 SER THR ALA TRP TYR LEU ASN MET ASN ILE VAL PRO GLU SEQRES 6 B 108 THR LEU GLN GLU ASP ILE LEU GLU ARG VAL GLY LYS TYR SEQRES 7 B 108 THR THR LEU TYR ILE PHE GLU ALA THR SER VAL THR TYR SEQRES 8 B 108 ASN THR ILE ASP SER ASN ALA ALA GLU THR LEU SER THR SEQRES 9 B 108 LEU PHE GLY GLU HET NA B 101 1 HETNAM NA SODIUM ION FORMUL 3 NA NA 1+ FORMUL 4 HOH *161(H2 O) HELIX 1 AA1 ASP A 13 GLN A 22 1 10 HELIX 2 AA2 GLU A 23 SER A 26 5 4 HELIX 3 AA3 VAL A 43 GLY A 56 1 14 HELIX 4 AA4 ASP A 75 GLY A 87 1 13 HELIX 5 AA5 ASP B 13 GLN B 22 1 10 HELIX 6 AA6 GLU B 23 SER B 26 5 4 HELIX 7 AA7 VAL B 43 GLY B 56 1 14 HELIX 8 AA8 ASP B 75 PHE B 86 1 12 SHEET 1 AA1 5 HIS A -11 SER A -8 0 SHEET 2 AA1 5 LEU A 61 ASN A 72 -1 O TYR A 71 N HIS A -10 SHEET 3 AA1 5 ASN A 4 CYS A 9 -1 N VAL A 6 O PHE A 64 SHEET 4 AA1 5 ALA A 35 ASN A 39 -1 O LEU A 38 N LEU A 5 SHEET 5 AA1 5 GLN A 28 SER A 32 -1 N LEU A 31 O ALA A 35 SHEET 1 AA2 6 HIS A -11 SER A -8 0 SHEET 2 AA2 6 LEU A 61 ASN A 72 -1 O TYR A 71 N HIS A -10 SHEET 3 AA2 6 LEU B 61 ASN B 72 -1 O THR B 70 N ILE A 63 SHEET 4 AA2 6 GLY B 3 CYS B 9 -1 N VAL B 6 O PHE B 64 SHEET 5 AA2 6 ALA B 35 MET B 40 -1 O LEU B 38 N LEU B 5 SHEET 6 AA2 6 GLN B 28 SER B 32 -1 N LEU B 31 O ALA B 35 LINK OH TYR A 58 NA NA B 101 1555 1556 2.77 LINK OD1 ASP B 50 NA NA B 101 1555 1555 2.43 LINK OG1 THR B 84 NA NA B 101 1555 6555 2.78 LINK NA NA B 101 O HOH B 214 1555 1555 2.99 CRYST1 85.360 115.630 46.730 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011715 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021400 0.00000