HEADER VIRAL PROTEIN/IMMUNE SYSTEM 15-NOV-21 7VYR TITLE CRYSTAL STRUCTURE OF SARS-COV-2 SPIKE RBD IN COMPLEX WITH THE D27 TITLE 2 NEUTRALIZING ANTIBODY FAB FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: D27 HEAVY CHAIN; COMPND 3 CHAIN: H, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: D27 LIGHT CHAIN; COMPND 7 CHAIN: L, B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: R, C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 13 2; SOURCE 14 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 15 ORGANISM_TAXID: 2697049; SOURCE 16 GENE: S, 2; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS COMPUTATIONAL DESIGN, NEUTRALIZING ANTIBODY, SARS-COV-2, VIRAL KEYWDS 2 PROTEIN, IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.-S.JEONG,B.-H.OH REVDAT 2 29-NOV-23 7VYR 1 REMARK REVDAT 1 02-MAR-22 7VYR 0 JRNL AUTH B.S.JEONG,J.S.CHA,I.HWANG,U.KIM,J.ADOLF-BRYFOGLE,B.COVENTRY, JRNL AUTH 2 H.S.CHO,K.D.KIM,B.H.OH JRNL TITL COMPUTATIONAL DESIGN OF A NEUTRALIZING ANTIBODY WITH JRNL TITL 2 PICOMOLAR BINDING AFFINITY FOR ALL CONCERNING SARS-COV-2 JRNL TITL 3 VARIANTS. JRNL REF MABS V. 14 21601 2022 JRNL REFN ESSN 1942-0870 JRNL PMID 35030983 JRNL DOI 10.1080/19420862.2021.2021601 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 73669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9200 - 4.5800 0.98 8378 150 0.1651 0.1842 REMARK 3 2 4.5700 - 3.6300 0.98 8216 144 0.1597 0.2023 REMARK 3 3 3.6300 - 3.1700 0.99 8380 160 0.1922 0.2322 REMARK 3 4 3.1700 - 2.8800 0.99 8329 147 0.2160 0.2452 REMARK 3 5 2.8800 - 2.6800 0.94 7917 138 0.2148 0.2713 REMARK 3 6 2.6800 - 2.5200 0.95 8026 141 0.2178 0.2784 REMARK 3 7 2.5200 - 2.3900 0.93 7825 144 0.2168 0.2811 REMARK 3 8 2.3900 - 2.2900 0.92 7685 131 0.2196 0.3023 REMARK 3 9 2.2900 - 2.2000 0.90 7617 141 0.2204 0.2859 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.245 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9708 REMARK 3 ANGLE : 1.216 13204 REMARK 3 CHIRALITY : 0.069 1448 REMARK 3 PLANARITY : 0.008 1718 REMARK 3 DIHEDRAL : 14.132 1342 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7VYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26740 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4MIK, 7JMO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) PEG 3350, 200MM NH4CL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 95.83800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H -18 REMARK 465 GLU H -17 REMARK 465 TRP H -16 REMARK 465 SER H -15 REMARK 465 TRP H -14 REMARK 465 VAL H -13 REMARK 465 PHE H -12 REMARK 465 LEU H -11 REMARK 465 PHE H -10 REMARK 465 PHE H -9 REMARK 465 LEU H -8 REMARK 465 SER H -7 REMARK 465 VAL H -6 REMARK 465 THR H -5 REMARK 465 THR H -4 REMARK 465 GLY H -3 REMARK 465 VAL H -2 REMARK 465 LEU H -1 REMARK 465 SER H 0 REMARK 465 GLN H 1 REMARK 465 CYS H 221 REMARK 465 ASP H 222 REMARK 465 LYS H 223 REMARK 465 THR H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 MET L -23 REMARK 465 GLY L -22 REMARK 465 ILE L -21 REMARK 465 LYS L -20 REMARK 465 MET L -19 REMARK 465 GLU L -18 REMARK 465 THR L -17 REMARK 465 HIS L -16 REMARK 465 SER L -15 REMARK 465 GLN L -14 REMARK 465 VAL L -13 REMARK 465 PHE L -12 REMARK 465 VAL L -11 REMARK 465 TYR L -10 REMARK 465 MET L -9 REMARK 465 LEU L -8 REMARK 465 LEU L -7 REMARK 465 TRP L -6 REMARK 465 LEU L -5 REMARK 465 SER L -4 REMARK 465 GLY L -3 REMARK 465 VAL L -2 REMARK 465 GLU L -1 REMARK 465 GLY L 0 REMARK 465 MET R 280 REMARK 465 VAL R 281 REMARK 465 LEU R 282 REMARK 465 VAL R 283 REMARK 465 ASN R 284 REMARK 465 GLN R 285 REMARK 465 SER R 286 REMARK 465 HIS R 287 REMARK 465 GLN R 288 REMARK 465 GLY R 289 REMARK 465 PHE R 290 REMARK 465 ASN R 291 REMARK 465 LYS R 292 REMARK 465 GLU R 293 REMARK 465 HIS R 294 REMARK 465 THR R 295 REMARK 465 SER R 296 REMARK 465 LYS R 297 REMARK 465 MET R 298 REMARK 465 VAL R 299 REMARK 465 SER R 300 REMARK 465 ALA R 301 REMARK 465 ILE R 302 REMARK 465 VAL R 303 REMARK 465 LEU R 304 REMARK 465 TYR R 305 REMARK 465 VAL R 306 REMARK 465 LEU R 307 REMARK 465 LEU R 308 REMARK 465 ALA R 309 REMARK 465 ALA R 310 REMARK 465 ALA R 311 REMARK 465 ALA R 312 REMARK 465 HIS R 313 REMARK 465 SER R 314 REMARK 465 ALA R 315 REMARK 465 PHE R 316 REMARK 465 ALA R 317 REMARK 465 ALA R 318 REMARK 465 ARG R 319 REMARK 465 VAL R 320 REMARK 465 GLN R 321 REMARK 465 PRO R 322 REMARK 465 THR R 323 REMARK 465 GLU R 324 REMARK 465 SER R 325 REMARK 465 ILE R 326 REMARK 465 VAL R 327 REMARK 465 ARG R 328 REMARK 465 PHE R 329 REMARK 465 PRO R 330 REMARK 465 ASN R 331 REMARK 465 ILE R 332 REMARK 465 THR R 333 REMARK 465 ASN R 334 REMARK 465 LEU R 335 REMARK 465 ALA R 522 REMARK 465 THR R 523 REMARK 465 VAL R 524 REMARK 465 CYS R 525 REMARK 465 GLY R 526 REMARK 465 PRO R 527 REMARK 465 LYS R 528 REMARK 465 LYS R 529 REMARK 465 SER R 530 REMARK 465 THR R 531 REMARK 465 ASN R 532 REMARK 465 LEU R 533 REMARK 465 VAL R 534 REMARK 465 LYS R 535 REMARK 465 ASN R 536 REMARK 465 LYS R 537 REMARK 465 CYS R 538 REMARK 465 VAL R 539 REMARK 465 ASN R 540 REMARK 465 PHE R 541 REMARK 465 MET A -18 REMARK 465 GLU A -17 REMARK 465 TRP A -16 REMARK 465 SER A -15 REMARK 465 TRP A -14 REMARK 465 VAL A -13 REMARK 465 PHE A -12 REMARK 465 LEU A -11 REMARK 465 PHE A -10 REMARK 465 PHE A -9 REMARK 465 LEU A -8 REMARK 465 SER A -7 REMARK 465 VAL A -6 REMARK 465 THR A -5 REMARK 465 THR A -4 REMARK 465 GLY A -3 REMARK 465 VAL A -2 REMARK 465 LEU A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 CYS A 221 REMARK 465 ASP A 222 REMARK 465 LYS A 223 REMARK 465 THR A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 MET B -23 REMARK 465 GLY B -22 REMARK 465 ILE B -21 REMARK 465 LYS B -20 REMARK 465 MET B -19 REMARK 465 GLU B -18 REMARK 465 THR B -17 REMARK 465 HIS B -16 REMARK 465 SER B -15 REMARK 465 GLN B -14 REMARK 465 VAL B -13 REMARK 465 PHE B -12 REMARK 465 VAL B -11 REMARK 465 TYR B -10 REMARK 465 MET B -9 REMARK 465 LEU B -8 REMARK 465 LEU B -7 REMARK 465 TRP B -6 REMARK 465 LEU B -5 REMARK 465 SER B -4 REMARK 465 GLY B -3 REMARK 465 VAL B -2 REMARK 465 GLU B -1 REMARK 465 GLY B 0 REMARK 465 MET C 280 REMARK 465 VAL C 281 REMARK 465 LEU C 282 REMARK 465 VAL C 283 REMARK 465 ASN C 284 REMARK 465 GLN C 285 REMARK 465 SER C 286 REMARK 465 HIS C 287 REMARK 465 GLN C 288 REMARK 465 GLY C 289 REMARK 465 PHE C 290 REMARK 465 ASN C 291 REMARK 465 LYS C 292 REMARK 465 GLU C 293 REMARK 465 HIS C 294 REMARK 465 THR C 295 REMARK 465 SER C 296 REMARK 465 LYS C 297 REMARK 465 MET C 298 REMARK 465 VAL C 299 REMARK 465 SER C 300 REMARK 465 ALA C 301 REMARK 465 ILE C 302 REMARK 465 VAL C 303 REMARK 465 LEU C 304 REMARK 465 TYR C 305 REMARK 465 VAL C 306 REMARK 465 LEU C 307 REMARK 465 LEU C 308 REMARK 465 ALA C 309 REMARK 465 ALA C 310 REMARK 465 ALA C 311 REMARK 465 ALA C 312 REMARK 465 HIS C 313 REMARK 465 SER C 314 REMARK 465 ALA C 315 REMARK 465 PHE C 316 REMARK 465 ALA C 317 REMARK 465 ALA C 318 REMARK 465 ARG C 319 REMARK 465 VAL C 320 REMARK 465 GLN C 321 REMARK 465 PRO C 322 REMARK 465 THR C 323 REMARK 465 GLU C 324 REMARK 465 SER C 325 REMARK 465 ILE C 326 REMARK 465 VAL C 327 REMARK 465 ARG C 328 REMARK 465 PHE C 329 REMARK 465 PRO C 330 REMARK 465 ASN C 331 REMARK 465 ILE C 332 REMARK 465 THR C 333 REMARK 465 ASN C 334 REMARK 465 LEU C 335 REMARK 465 ALA C 522 REMARK 465 THR C 523 REMARK 465 VAL C 524 REMARK 465 CYS C 525 REMARK 465 GLY C 526 REMARK 465 PRO C 527 REMARK 465 LYS C 528 REMARK 465 LYS C 529 REMARK 465 SER C 530 REMARK 465 THR C 531 REMARK 465 ASN C 532 REMARK 465 LEU C 533 REMARK 465 VAL C 534 REMARK 465 LYS C 535 REMARK 465 ASN C 536 REMARK 465 LYS C 537 REMARK 465 CYS C 538 REMARK 465 VAL C 539 REMARK 465 ASN C 540 REMARK 465 PHE C 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG R 346 OH TYR R 451 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 82 CD GLU B 82 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 108 CG - CD - NE ANGL. DEV. = -17.6 DEGREES REMARK 500 LYS L 169 CD - CE - NZ ANGL. DEV. = -21.0 DEGREES REMARK 500 GLU L 187 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU L 187 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 CYS R 361 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU R 387 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG B 108 CG - CD - NE ANGL. DEV. = -14.4 DEGREES REMARK 500 PHE C 377 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE H 64 -28.57 84.72 REMARK 500 ASP H 106 -75.99 -112.33 REMARK 500 SER H 135 -169.92 -112.38 REMARK 500 ASP H 149 81.40 44.24 REMARK 500 TYR L 2 -53.77 -24.73 REMARK 500 ASP L 50 -50.56 75.44 REMARK 500 GLU L 59 -36.54 -32.69 REMARK 500 ASN L 65 118.01 -160.52 REMARK 500 ALA L 83 170.75 176.66 REMARK 500 ASP L 95 -142.42 63.49 REMARK 500 ASP L 151 48.51 38.58 REMARK 500 PRO R 337 50.69 -118.68 REMARK 500 ALA R 352 52.65 -111.08 REMARK 500 SER R 359 -98.08 -91.35 REMARK 500 CYS R 361 -155.42 -163.88 REMARK 500 PRO R 384 -73.13 -65.16 REMARK 500 LEU R 387 -160.03 49.82 REMARK 500 CYS R 391 -63.55 -132.78 REMARK 500 PHE R 392 150.73 66.22 REMARK 500 ASN R 422 -58.00 -133.95 REMARK 500 ASP R 428 33.02 -82.80 REMARK 500 LEU R 517 -69.03 80.38 REMARK 500 LEU R 518 -161.10 38.65 REMARK 500 ALA R 520 69.37 -150.45 REMARK 500 ASP B 50 -50.41 73.14 REMARK 500 GLU B 59 -35.69 -16.01 REMARK 500 GLU B 82 111.43 -35.61 REMARK 500 ASP B 95 -143.05 59.29 REMARK 500 ASN B 138 60.83 60.74 REMARK 500 PRO C 337 48.88 -74.38 REMARK 500 ALA C 352 51.86 -104.78 REMARK 500 THR C 385 -25.06 103.83 REMARK 500 LEU C 387 68.28 -68.37 REMARK 500 ASN C 388 -80.29 -140.51 REMARK 500 ASN C 422 -54.73 -126.10 REMARK 500 SER C 469 151.18 -47.63 REMARK 500 ASN C 481 57.77 39.43 REMARK 500 LEU C 518 -95.01 -73.16 REMARK 500 HIS C 519 -104.96 -120.72 REMARK 500 ALA C 520 52.59 -145.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET H 105 ASP H 106 -147.37 REMARK 500 SER H 135 THR H 136 -121.42 REMARK 500 SER H 137 GLY H 138 -143.16 REMARK 500 PRO H 152 GLU H 153 -147.82 REMARK 500 ASN R 388 ASP R 389 137.62 REMARK 500 ASN A 31 TRP A 32 142.88 REMARK 500 PRO B 58 GLU B 59 147.83 REMARK 500 ASP B 81 GLU B 82 147.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE R 377 0.06 SIDE CHAIN REMARK 500 GLU B 82 0.10 SIDE CHAIN REMARK 500 PHE C 377 0.06 SIDE CHAIN REMARK 500 PHE C 392 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7VYR H -18 233 PDB 7VYR 7VYR -18 233 DBREF 7VYR L -23 214 PDB 7VYR 7VYR -23 214 DBREF 7VYR R 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 DBREF 7VYR A -18 233 PDB 7VYR 7VYR -18 233 DBREF 7VYR B -23 214 PDB 7VYR 7VYR -23 214 DBREF 7VYR C 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 SEQADV 7VYR MET R 280 UNP P0DTC2 INITIATING METHIONINE SEQADV 7VYR VAL R 281 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU R 282 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL R 283 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ASN R 284 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLN R 285 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER R 286 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR HIS R 287 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLN R 288 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLY R 289 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR PHE R 290 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ASN R 291 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LYS R 292 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLU R 293 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR HIS R 294 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR THR R 295 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER R 296 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LYS R 297 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR MET R 298 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL R 299 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER R 300 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 301 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ILE R 302 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL R 303 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU R 304 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR TYR R 305 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL R 306 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU R 307 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU R 308 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 309 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 310 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 311 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 312 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR HIS R 313 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER R 314 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 315 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR PHE R 316 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 317 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA R 318 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR MET C 280 UNP P0DTC2 INITIATING METHIONINE SEQADV 7VYR VAL C 281 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU C 282 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL C 283 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ASN C 284 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLN C 285 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER C 286 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR HIS C 287 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLN C 288 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLY C 289 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR PHE C 290 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ASN C 291 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LYS C 292 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR GLU C 293 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR HIS C 294 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR THR C 295 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER C 296 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LYS C 297 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR MET C 298 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL C 299 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER C 300 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 301 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ILE C 302 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL C 303 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU C 304 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR TYR C 305 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR VAL C 306 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU C 307 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR LEU C 308 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 309 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 310 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 311 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 312 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR HIS C 313 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR SER C 314 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 315 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR PHE C 316 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 317 UNP P0DTC2 EXPRESSION TAG SEQADV 7VYR ALA C 318 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 252 MET GLU TRP SER TRP VAL PHE LEU PHE PHE LEU SER VAL SEQRES 2 H 252 THR THR GLY VAL LEU SER GLN VAL GLN LEU GLN GLN SER SEQRES 3 H 252 GLY ALA GLU VAL LYS LYS PRO GLY SER SER VAL LYS VAL SEQRES 4 H 252 SER CYS LYS ALA SER GLY GLY THR PHE GLY ASN TRP SER SEQRES 5 H 252 ILE SER TRP VAL ARG GLN ALA PRO GLY GLN GLY LEU GLU SEQRES 6 H 252 TRP MET GLY GLY ILE ASP PRO SER ARG GLY GLU ALA THR SEQRES 7 H 252 TYR ALA GLN LYS PHE GLN GLY ARG VAL THR ILE THR THR SEQRES 8 H 252 ASP GLU SER THR SER THR ALA TYR MET GLU LEU SER SER SEQRES 9 H 252 LEU ARG SER GLU ASP THR ALA VAL TYR TYR CYS ALA ARG SEQRES 10 H 252 GLU THR GLU GLN GLY GLY MET ASP VAL TRP GLY GLN GLY SEQRES 11 H 252 THR THR VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 12 H 252 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 13 H 252 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 14 H 252 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 15 H 252 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 16 H 252 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 17 H 252 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 18 H 252 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 19 H 252 VAL GLU PRO LYS SER CYS ASP LYS THR HIS HIS HIS HIS SEQRES 20 H 252 HIS HIS HIS HIS HIS SEQRES 1 L 238 MET GLY ILE LYS MET GLU THR HIS SER GLN VAL PHE VAL SEQRES 2 L 238 TYR MET LEU LEU TRP LEU SER GLY VAL GLU GLY SER TYR SEQRES 3 L 238 GLU LEU THR GLN PRO PRO SER VAL SER VAL ALA PRO GLY SEQRES 4 L 238 LYS THR ALA ARG ILE THR CYS GLY GLY ASN ASN ILE GLY SEQRES 5 L 238 ARG LYS SER VAL HIS TRP TYR GLN GLN LYS PRO GLY GLN SEQRES 6 L 238 ALA PRO VAL LEU VAL VAL TYR ASP ASP SER ASP ARG PRO SEQRES 7 L 238 SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SER GLY SEQRES 8 L 238 ASN THR ALA THR LEU THR ILE SER ARG VAL GLU ALA GLY SEQRES 9 L 238 ASP GLU ALA ASP TYR TYR CYS GLN VAL TYR ASP LEU PHE SEQRES 10 L 238 SER ASP TYR VAL PHE GLY THR GLY THR LYS VAL GLU ILE SEQRES 11 L 238 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 12 L 238 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 13 L 238 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 14 L 238 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 15 L 238 SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER SEQRES 16 L 238 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 17 L 238 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 18 L 238 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 19 L 238 ARG GLY GLU CYS SEQRES 1 R 262 MET VAL LEU VAL ASN GLN SER HIS GLN GLY PHE ASN LYS SEQRES 2 R 262 GLU HIS THR SER LYS MET VAL SER ALA ILE VAL LEU TYR SEQRES 3 R 262 VAL LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA ALA SEQRES 4 R 262 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 5 R 262 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 6 R 262 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 7 R 262 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 8 R 262 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 9 R 262 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 10 R 262 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 11 R 262 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 12 R 262 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 13 R 262 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 14 R 262 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 15 R 262 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 16 R 262 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 17 R 262 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 18 R 262 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 19 R 262 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 20 R 262 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 21 R 262 ASN PHE SEQRES 1 A 252 MET GLU TRP SER TRP VAL PHE LEU PHE PHE LEU SER VAL SEQRES 2 A 252 THR THR GLY VAL LEU SER GLN VAL GLN LEU GLN GLN SER SEQRES 3 A 252 GLY ALA GLU VAL LYS LYS PRO GLY SER SER VAL LYS VAL SEQRES 4 A 252 SER CYS LYS ALA SER GLY GLY THR PHE GLY ASN TRP SER SEQRES 5 A 252 ILE SER TRP VAL ARG GLN ALA PRO GLY GLN GLY LEU GLU SEQRES 6 A 252 TRP MET GLY GLY ILE ASP PRO SER ARG GLY GLU ALA THR SEQRES 7 A 252 TYR ALA GLN LYS PHE GLN GLY ARG VAL THR ILE THR THR SEQRES 8 A 252 ASP GLU SER THR SER THR ALA TYR MET GLU LEU SER SER SEQRES 9 A 252 LEU ARG SER GLU ASP THR ALA VAL TYR TYR CYS ALA ARG SEQRES 10 A 252 GLU THR GLU GLN GLY GLY MET ASP VAL TRP GLY GLN GLY SEQRES 11 A 252 THR THR VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 12 A 252 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 13 A 252 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 14 A 252 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 15 A 252 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 16 A 252 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 17 A 252 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 18 A 252 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 19 A 252 VAL GLU PRO LYS SER CYS ASP LYS THR HIS HIS HIS HIS SEQRES 20 A 252 HIS HIS HIS HIS HIS SEQRES 1 B 238 MET GLY ILE LYS MET GLU THR HIS SER GLN VAL PHE VAL SEQRES 2 B 238 TYR MET LEU LEU TRP LEU SER GLY VAL GLU GLY SER TYR SEQRES 3 B 238 GLU LEU THR GLN PRO PRO SER VAL SER VAL ALA PRO GLY SEQRES 4 B 238 LYS THR ALA ARG ILE THR CYS GLY GLY ASN ASN ILE GLY SEQRES 5 B 238 ARG LYS SER VAL HIS TRP TYR GLN GLN LYS PRO GLY GLN SEQRES 6 B 238 ALA PRO VAL LEU VAL VAL TYR ASP ASP SER ASP ARG PRO SEQRES 7 B 238 SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SER GLY SEQRES 8 B 238 ASN THR ALA THR LEU THR ILE SER ARG VAL GLU ALA GLY SEQRES 9 B 238 ASP GLU ALA ASP TYR TYR CYS GLN VAL TYR ASP LEU PHE SEQRES 10 B 238 SER ASP TYR VAL PHE GLY THR GLY THR LYS VAL GLU ILE SEQRES 11 B 238 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 12 B 238 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 13 B 238 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 14 B 238 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 15 B 238 SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER SEQRES 16 B 238 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 17 B 238 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 18 B 238 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 19 B 238 ARG GLY GLU CYS SEQRES 1 C 262 MET VAL LEU VAL ASN GLN SER HIS GLN GLY PHE ASN LYS SEQRES 2 C 262 GLU HIS THR SER LYS MET VAL SER ALA ILE VAL LEU TYR SEQRES 3 C 262 VAL LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA ALA SEQRES 4 C 262 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 5 C 262 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 6 C 262 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 7 C 262 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 8 C 262 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 9 C 262 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 10 C 262 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 11 C 262 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 12 C 262 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 13 C 262 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 14 C 262 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 15 C 262 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 16 C 262 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 17 C 262 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 18 C 262 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 19 C 262 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 20 C 262 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 21 C 262 ASN PHE FORMUL 7 HOH *460(H2 O) HELIX 1 AA1 ARG H 87 THR H 91 5 5 HELIX 2 AA2 SER H 161 ALA H 163 5 3 HELIX 3 AA3 SER H 192 GLY H 195 5 4 HELIX 4 AA4 LYS H 206 ASN H 209 5 4 HELIX 5 AA5 ASN L 26 LYS L 30 5 5 HELIX 6 AA6 GLU L 78 GLU L 82 5 5 HELIX 7 AA7 SER L 121 LYS L 126 1 6 HELIX 8 AA8 LYS L 183 GLU L 187 1 5 HELIX 9 AA9 PHE R 338 ALA R 344 1 7 HELIX 10 AB1 VAL R 367 SER R 371 5 5 HELIX 11 AB2 ASP R 405 ILE R 410 5 6 HELIX 12 AB3 GLY R 416 ASN R 422 1 7 HELIX 13 AB4 SER R 438 SER R 443 1 6 HELIX 14 AB5 GLY R 502 TYR R 505 5 4 HELIX 15 AB6 ARG A 87 THR A 91 5 5 HELIX 16 AB7 SER A 161 ALA A 163 5 3 HELIX 17 AB8 SER A 192 LEU A 194 5 3 HELIX 18 AB9 LYS A 206 ASN A 209 5 4 HELIX 19 AC1 ASN B 26 LYS B 30 5 5 HELIX 20 AC2 GLU B 78 GLU B 82 5 5 HELIX 21 AC3 SER B 121 SER B 127 1 7 HELIX 22 AC4 LYS B 183 LYS B 188 1 6 HELIX 23 AC5 PRO C 337 ASN C 343 1 7 HELIX 24 AC6 SER C 349 TRP C 353 5 5 HELIX 25 AC7 ASP C 405 ILE C 410 5 6 HELIX 26 AC8 GLY C 416 ASN C 422 1 7 HELIX 27 AC9 SER C 438 SER C 443 1 6 HELIX 28 AD1 GLY C 502 TYR C 505 5 4 SHEET 1 AA1 4 LEU H 4 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 ALA H 24 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA1 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA2 6 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 AA2 6 ALA H 58 TYR H 60 -1 O THR H 59 N GLY H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 AA3 4 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 112 SHEET 4 AA3 4 MET H 105 TRP H 108 -1 O ASP H 106 N ARG H 98 SHEET 1 AA4 4 SER H 125 LEU H 129 0 SHEET 2 AA4 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AA4 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA4 4 VAL H 168 THR H 170 -1 N HIS H 169 O VAL H 186 SHEET 1 AA5 4 SER H 125 LEU H 129 0 SHEET 2 AA5 4 THR H 140 TYR H 150 -1 O LEU H 146 N PHE H 127 SHEET 3 AA5 4 TYR H 181 PRO H 190 -1 O LEU H 183 N VAL H 147 SHEET 4 AA5 4 VAL H 174 LEU H 175 -1 N VAL H 174 O SER H 182 SHEET 1 AA6 3 THR H 156 TRP H 159 0 SHEET 2 AA6 3 ILE H 200 HIS H 205 -1 O ASN H 202 N SER H 158 SHEET 3 AA6 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SHEET 1 AA7 5 SER L 9 VAL L 12 0 SHEET 2 AA7 5 THR L 102 ILE L 106 1 O GLU L 105 N VAL L 10 SHEET 3 AA7 5 ALA L 83 ASP L 91 -1 N ALA L 83 O VAL L 104 SHEET 4 AA7 5 HIS L 33 GLN L 37 -1 N GLN L 37 O ASP L 84 SHEET 5 AA7 5 VAL L 44 VAL L 47 -1 O VAL L 44 N GLN L 36 SHEET 1 AA8 4 SER L 9 VAL L 12 0 SHEET 2 AA8 4 THR L 102 ILE L 106 1 O GLU L 105 N VAL L 10 SHEET 3 AA8 4 ALA L 83 ASP L 91 -1 N ALA L 83 O VAL L 104 SHEET 4 AA8 4 ASP L 95 PHE L 98 -1 O ASP L 95 N ASP L 91 SHEET 1 AA9 3 ALA L 18 GLY L 23 0 SHEET 2 AA9 3 THR L 69 ILE L 74 -1 O ALA L 70 N CYS L 22 SHEET 3 AA9 3 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 GLN L 155 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB3 5 ASN R 354 ILE R 358 0 SHEET 2 AB3 5 VAL R 395 ARG R 403 -1 O VAL R 395 N ILE R 358 SHEET 3 AB3 5 PRO R 507 PHE R 515 -1 O TYR R 508 N ILE R 402 SHEET 4 AB3 5 GLY R 431 ASN R 437 -1 N ILE R 434 O VAL R 511 SHEET 5 AB3 5 THR R 376 TYR R 380 -1 N TYR R 380 O GLY R 431 SHEET 1 AB4 2 LEU R 452 ARG R 454 0 SHEET 2 AB4 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SHEET 1 AB5 2 TYR R 473 GLN R 474 0 SHEET 2 AB5 2 CYS R 488 TYR R 489 -1 O TYR R 489 N TYR R 473 SHEET 1 AB6 4 LEU A 4 GLN A 6 0 SHEET 2 AB6 4 VAL A 18 ALA A 24 -1 O LYS A 23 N GLN A 5 SHEET 3 AB6 4 THR A 78 LEU A 83 -1 O MET A 81 N VAL A 20 SHEET 4 AB6 4 VAL A 68 ASP A 73 -1 N THR A 71 O TYR A 80 SHEET 1 AB7 6 GLU A 10 LYS A 12 0 SHEET 2 AB7 6 THR A 112 VAL A 116 1 O THR A 115 N LYS A 12 SHEET 3 AB7 6 ALA A 92 GLU A 99 -1 N ALA A 92 O VAL A 114 SHEET 4 AB7 6 ILE A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AB7 6 LEU A 45 ILE A 51 -1 O GLY A 49 N TRP A 36 SHEET 6 AB7 6 ALA A 58 TYR A 60 -1 O THR A 59 N GLY A 50 SHEET 1 AB8 4 GLU A 10 LYS A 12 0 SHEET 2 AB8 4 THR A 112 VAL A 116 1 O THR A 115 N LYS A 12 SHEET 3 AB8 4 ALA A 92 GLU A 99 -1 N ALA A 92 O VAL A 114 SHEET 4 AB8 4 MET A 105 TRP A 108 -1 O VAL A 107 N ARG A 98 SHEET 1 AB9 4 SER A 125 LEU A 129 0 SHEET 2 AB9 4 THR A 140 TYR A 150 -1 O LEU A 146 N PHE A 127 SHEET 3 AB9 4 TYR A 181 PRO A 190 -1 O TYR A 181 N TYR A 150 SHEET 4 AB9 4 VAL A 168 THR A 170 -1 N HIS A 169 O VAL A 186 SHEET 1 AC1 4 SER A 125 LEU A 129 0 SHEET 2 AC1 4 THR A 140 TYR A 150 -1 O LEU A 146 N PHE A 127 SHEET 3 AC1 4 TYR A 181 PRO A 190 -1 O TYR A 181 N TYR A 150 SHEET 4 AC1 4 VAL A 174 LEU A 175 -1 N VAL A 174 O SER A 182 SHEET 1 AC2 3 THR A 156 TRP A 159 0 SHEET 2 AC2 3 ILE A 200 HIS A 205 -1 O ASN A 202 N SER A 158 SHEET 3 AC2 3 THR A 210 LYS A 215 -1 O THR A 210 N HIS A 205 SHEET 1 AC3 5 SER B 9 VAL B 12 0 SHEET 2 AC3 5 THR B 102 ILE B 106 1 O LYS B 103 N VAL B 10 SHEET 3 AC3 5 ALA B 83 ASP B 91 -1 N ALA B 83 O VAL B 104 SHEET 4 AC3 5 HIS B 33 GLN B 37 -1 N GLN B 37 O ASP B 84 SHEET 5 AC3 5 VAL B 44 VAL B 47 -1 O VAL B 44 N GLN B 36 SHEET 1 AC4 4 SER B 9 VAL B 12 0 SHEET 2 AC4 4 THR B 102 ILE B 106 1 O LYS B 103 N VAL B 10 SHEET 3 AC4 4 ALA B 83 ASP B 91 -1 N ALA B 83 O VAL B 104 SHEET 4 AC4 4 ASP B 95 PHE B 98 -1 O VAL B 97 N VAL B 89 SHEET 1 AC5 3 ALA B 18 GLY B 23 0 SHEET 2 AC5 3 THR B 69 ILE B 74 -1 O LEU B 72 N ILE B 20 SHEET 3 AC5 3 PHE B 61 SER B 66 -1 N SER B 62 O THR B 73 SHEET 1 AC6 4 SER B 114 PHE B 118 0 SHEET 2 AC6 4 THR B 129 PHE B 139 -1 O LEU B 135 N PHE B 116 SHEET 3 AC6 4 TYR B 173 SER B 182 -1 O LEU B 179 N VAL B 132 SHEET 4 AC6 4 SER B 159 VAL B 163 -1 N GLN B 160 O THR B 178 SHEET 1 AC7 4 ALA B 153 GLN B 155 0 SHEET 2 AC7 4 LYS B 145 VAL B 150 -1 N TRP B 148 O GLN B 155 SHEET 3 AC7 4 VAL B 191 THR B 197 -1 O GLU B 195 N GLN B 147 SHEET 4 AC7 4 VAL B 205 ASN B 210 -1 O VAL B 205 N VAL B 196 SHEET 1 AC8 5 ASN C 354 ILE C 358 0 SHEET 2 AC8 5 ASN C 394 ARG C 403 -1 O VAL C 395 N ILE C 358 SHEET 3 AC8 5 PRO C 507 GLU C 516 -1 O TYR C 508 N ILE C 402 SHEET 4 AC8 5 GLY C 431 ASN C 437 -1 N ILE C 434 O VAL C 511 SHEET 5 AC8 5 THR C 376 TYR C 380 -1 N TYR C 380 O GLY C 431 SHEET 1 AC9 2 LEU C 452 ARG C 454 0 SHEET 2 AC9 2 LEU C 492 SER C 494 -1 O GLN C 493 N TYR C 453 SHEET 1 AD1 2 TYR C 473 GLN C 474 0 SHEET 2 AD1 2 CYS C 488 TYR C 489 -1 O TYR C 489 N TYR C 473 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 2 CYS L 22 CYS L 87 1555 1555 2.06 SSBOND 3 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 4 CYS R 336 CYS R 361 1555 1555 2.04 SSBOND 5 CYS R 379 CYS R 432 1555 1555 2.06 SSBOND 6 CYS R 480 CYS R 488 1555 1555 2.05 SSBOND 7 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 8 CYS A 145 CYS A 201 1555 1555 2.07 SSBOND 9 CYS B 22 CYS B 87 1555 1555 2.07 SSBOND 10 CYS B 134 CYS B 194 1555 1555 2.07 SSBOND 11 CYS C 336 CYS C 361 1555 1555 2.04 SSBOND 12 CYS C 379 CYS C 432 1555 1555 2.06 SSBOND 13 CYS C 480 CYS C 488 1555 1555 2.08 CISPEP 1 PHE H 151 PRO H 152 0 -5.75 CISPEP 2 TYR L 140 PRO L 141 0 -0.80 CISPEP 3 PHE A 151 PRO A 152 0 -5.50 CISPEP 4 GLU A 153 PRO A 154 0 2.84 CISPEP 5 TYR B 140 PRO B 141 0 6.37 CRYST1 61.801 191.676 65.900 90.00 93.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016181 0.000000 0.001128 0.00000 SCALE2 0.000000 0.005217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015211 0.00000