HEADER ISOMERASE 15-NOV-21 7VYY TITLE THE CRYSTAL STRUCTURE OF NON-HYDROLYZING UDPGLCNAC 2-EPIMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES KASUGAENSIS; SOURCE 3 ORGANISM_TAXID: 1946; SOURCE 4 GENE: KASQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIMERASE, UDP-SUGARS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,R.RATTINAM REVDAT 3 29-NOV-23 7VYY 1 REMARK REVDAT 2 07-JUN-23 7VYY 1 AUTHOR JRNL REVDAT 1 16-NOV-22 7VYY 0 JRNL AUTH R.RATTINAM,R.S.BASHA,Y.L.WANG,Z.C.WANG,N.S.HSU,K.H.LIN, JRNL AUTH 2 S.M.ZADEH,K.ADHIKARI,J.P.LIN,T.L.LI JRNL TITL KASQ AN EPIMERASE PRIMES THE BIOSYNTHESIS OF AMINOGLYCOSIDE JRNL TITL 2 ANTIBIOTIC KASUGAMYCIN AND KASF/H ACETYLTRANSFERASES JRNL TITL 3 INACTIVATE ITS ACTIVITY. JRNL REF BIOMEDICINES V. 10 2022 JRNL REFN ESSN 2227-9059 JRNL PMID 35203422 JRNL DOI 10.3390/BIOMEDICINES10020212 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 28957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.215 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : -0.05300 REMARK 3 B33 (A**2) : -0.22200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.621 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.009 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5514 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5401 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7493 ; 1.313 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12363 ; 1.141 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;28.045 ;19.216 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 902 ;17.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 73 ;17.367 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 722 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6215 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1271 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1126 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 41 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2585 ; 0.140 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.071 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.111 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2818 ; 2.153 ; 4.262 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2817 ; 2.153 ; 4.261 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3512 ; 3.571 ; 6.381 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3513 ; 3.570 ; 6.381 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2696 ; 2.119 ; 4.723 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2697 ; 2.118 ; 4.723 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3981 ; 3.623 ; 6.937 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3982 ; 3.623 ; 6.938 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 370 NULL REMARK 3 2 B 2 B 370 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7VYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28957 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 25.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1VGV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM/SODIUM TARTRATE, 0.1 M REMARK 280 BIS TRIS-PROPANE PH 7.5, 20% PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.17450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.02600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.17450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.02600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 40 REMARK 465 HIS A 41 REMARK 465 ARG A 42 REMARK 465 ASP A 43 REMARK 465 MET A 44 REMARK 465 LEU A 45 REMARK 465 ARG A 185 REMARK 465 PRO A 186 REMARK 465 GLY A 187 REMARK 465 ASP A 188 REMARK 465 SER A 189 REMARK 465 ALA A 190 REMARK 465 LEU A 371 REMARK 465 SER A 372 REMARK 465 SER A 373 REMARK 465 PRO A 374 REMARK 465 ASP A 375 REMARK 465 ALA A 376 REMARK 465 SER A 377 REMARK 465 ALA A 378 REMARK 465 GLY A 379 REMARK 465 LEU A 380 REMARK 465 ARG A 381 REMARK 465 THR A 382 REMARK 465 TYR A 383 REMARK 465 ARG A 384 REMARK 465 GLN B 40 REMARK 465 HIS B 41 REMARK 465 ARG B 42 REMARK 465 ASP B 43 REMARK 465 MET B 44 REMARK 465 LEU B 45 REMARK 465 ASP B 46 REMARK 465 GLU B 47 REMARK 465 ILE B 48 REMARK 465 ASN B 49 REMARK 465 GLU B 50 REMARK 465 VAL B 182 REMARK 465 LEU B 183 REMARK 465 ASP B 184 REMARK 465 ARG B 185 REMARK 465 PRO B 186 REMARK 465 GLY B 187 REMARK 465 ASP B 188 REMARK 465 SER B 189 REMARK 465 ALA B 190 REMARK 465 ASN B 191 REMARK 465 LEU B 371 REMARK 465 SER B 372 REMARK 465 SER B 373 REMARK 465 PRO B 374 REMARK 465 ASP B 375 REMARK 465 ALA B 376 REMARK 465 SER B 377 REMARK 465 ALA B 378 REMARK 465 GLY B 379 REMARK 465 LEU B 380 REMARK 465 ARG B 381 REMARK 465 THR B 382 REMARK 465 TYR B 383 REMARK 465 ARG B 384 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 347 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 350 CG1 CG2 CD1 REMARK 470 VAL B 351 CG1 CG2 REMARK 470 GLU B 364 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 119 71.66 60.74 REMARK 500 ARG A 192 -89.42 -56.41 REMARK 500 HIS A 209 -29.26 -140.73 REMARK 500 VAL A 351 -12.76 88.96 REMARK 500 GLU B 119 71.97 60.87 REMARK 500 PRO B 243 7.01 -66.26 REMARK 500 ILE B 350 -37.78 81.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 25 O REMARK 620 2 ASP A 26 O 78.6 REMARK 620 3 ASP A 28 O 76.8 90.9 REMARK 620 4 PHE A 31 O 83.1 161.0 89.9 REMARK 620 5 HOH A 528 O 99.7 79.9 170.6 98.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 25 O REMARK 620 2 ASP B 26 O 75.6 REMARK 620 3 ASP B 28 O 73.8 86.4 REMARK 620 4 PHE B 31 O 83.4 158.9 89.2 REMARK 620 N 1 2 3 DBREF1 7VYY A 1 384 UNP A0A0K1H2R6_STRKA DBREF2 7VYY A A0A0K1H2R6 1 384 DBREF1 7VYY B 1 384 UNP A0A0K1H2R6_STRKA DBREF2 7VYY B A0A0K1H2R6 1 384 SEQRES 1 A 384 MET ALA LEU ARG VAL GLY ILE VAL TYR GLY THR ARG PRO SEQRES 2 A 384 GLU ALA ILE LYS LEU ALA PRO LEU VAL LEU ALA LEU ASP SEQRES 3 A 384 ALA ASP PRO GLY PHE GLU PRO VAL ILE ILE THR THR GLY SEQRES 4 A 384 GLN HIS ARG ASP MET LEU ASP GLU ILE ASN GLU LEU PHE SEQRES 5 A 384 GLY LEU ARG PRO ARG HIS ASN LEU ASP ILE MET ARG PRO SEQRES 6 A 384 GLY GLN ARG LEU SER ALA MET ALA SER ARG ILE VAL GLY SEQRES 7 A 384 GLU LEU GLY ASP PRO LEU LEU ASP GLU LEU VAL ASP VAL SEQRES 8 A 384 ALA VAL VAL GLN GLY ASP THR SER THR ALA PHE ALA ALA SEQRES 9 A 384 ALA TYR ALA ALA ALA CYS GLU ARG ILE PRO VAL ALA HIS SEQRES 10 A 384 LEU GLU ALA GLY LEU ARG THR GLY ASP ARG PHE GLU PRO SEQRES 11 A 384 PHE PRO GLU GLU ILE ASN ARG ARG LEU ILE THR GLN LEU SEQRES 12 A 384 ALA ASP LEU HIS PHE ALA PRO THR ALA ASP ALA ALA GLY SEQRES 13 A 384 ASN LEU LEU ALA GLU GLY VAL ARG SER ASP ASP VAL TYR SEQRES 14 A 384 VAL THR GLY ASN THR VAL ILE ASP ALA MET HIS LEU VAL SEQRES 15 A 384 LEU ASP ARG PRO GLY ASP SER ALA ASN ARG GLU LEU ASP SEQRES 16 A 384 ALA PHE THR GLU GLY ARG GLN THR VAL LEU LEU THR MET SEQRES 17 A 384 HIS ARG ARG GLU SER TRP GLY ILE PRO MET GLY ARG VAL SEQRES 18 A 384 ALA ALA ALA VAL ALA GLU LEU CYS ARG SER ARG PRO THR SEQRES 19 A 384 LEU ARG PHE VAL ILE PRO LEU HIS PRO ASN PRO GLU VAL SEQRES 20 A 384 ARG ARG VAL PHE ARG SER HIS LEU SER SER LEU THR GLN SEQRES 21 A 384 VAL LEU LEU CYS GLU PRO LEU ARG TYR SER GLU PHE ILE SEQRES 22 A 384 ARG LEU MET HIS ARG ALA VAL LEU VAL LEU THR ASP SER SEQRES 23 A 384 GLY GLY VAL GLN GLU GLU ALA PRO THR LEU GLY LYS PRO SEQRES 24 A 384 VAL LEU VAL LEU ARG ASP ARG THR GLU ARG PRO GLU GLY SEQRES 25 A 384 ILE ALA ALA GLY CYS ALA ARG LEU VAL GLY THR ASP PRO SEQRES 26 A 384 ALA LEU ILE VAL LYS GLU VAL GLY ARG LEU LEU ASP ASP SEQRES 27 A 384 PRO GLU ALA TYR GLU ALA MET ARG ARG PRO GLY ILE VAL SEQRES 28 A 384 CYS TYR GLY GLU GLY ASP ALA ALA ALA ARG CYS LEU GLU SEQRES 29 A 384 ALA LEU ARG GLU ARG TRP LEU SER SER PRO ASP ALA SER SEQRES 30 A 384 ALA GLY LEU ARG THR TYR ARG SEQRES 1 B 384 MET ALA LEU ARG VAL GLY ILE VAL TYR GLY THR ARG PRO SEQRES 2 B 384 GLU ALA ILE LYS LEU ALA PRO LEU VAL LEU ALA LEU ASP SEQRES 3 B 384 ALA ASP PRO GLY PHE GLU PRO VAL ILE ILE THR THR GLY SEQRES 4 B 384 GLN HIS ARG ASP MET LEU ASP GLU ILE ASN GLU LEU PHE SEQRES 5 B 384 GLY LEU ARG PRO ARG HIS ASN LEU ASP ILE MET ARG PRO SEQRES 6 B 384 GLY GLN ARG LEU SER ALA MET ALA SER ARG ILE VAL GLY SEQRES 7 B 384 GLU LEU GLY ASP PRO LEU LEU ASP GLU LEU VAL ASP VAL SEQRES 8 B 384 ALA VAL VAL GLN GLY ASP THR SER THR ALA PHE ALA ALA SEQRES 9 B 384 ALA TYR ALA ALA ALA CYS GLU ARG ILE PRO VAL ALA HIS SEQRES 10 B 384 LEU GLU ALA GLY LEU ARG THR GLY ASP ARG PHE GLU PRO SEQRES 11 B 384 PHE PRO GLU GLU ILE ASN ARG ARG LEU ILE THR GLN LEU SEQRES 12 B 384 ALA ASP LEU HIS PHE ALA PRO THR ALA ASP ALA ALA GLY SEQRES 13 B 384 ASN LEU LEU ALA GLU GLY VAL ARG SER ASP ASP VAL TYR SEQRES 14 B 384 VAL THR GLY ASN THR VAL ILE ASP ALA MET HIS LEU VAL SEQRES 15 B 384 LEU ASP ARG PRO GLY ASP SER ALA ASN ARG GLU LEU ASP SEQRES 16 B 384 ALA PHE THR GLU GLY ARG GLN THR VAL LEU LEU THR MET SEQRES 17 B 384 HIS ARG ARG GLU SER TRP GLY ILE PRO MET GLY ARG VAL SEQRES 18 B 384 ALA ALA ALA VAL ALA GLU LEU CYS ARG SER ARG PRO THR SEQRES 19 B 384 LEU ARG PHE VAL ILE PRO LEU HIS PRO ASN PRO GLU VAL SEQRES 20 B 384 ARG ARG VAL PHE ARG SER HIS LEU SER SER LEU THR GLN SEQRES 21 B 384 VAL LEU LEU CYS GLU PRO LEU ARG TYR SER GLU PHE ILE SEQRES 22 B 384 ARG LEU MET HIS ARG ALA VAL LEU VAL LEU THR ASP SER SEQRES 23 B 384 GLY GLY VAL GLN GLU GLU ALA PRO THR LEU GLY LYS PRO SEQRES 24 B 384 VAL LEU VAL LEU ARG ASP ARG THR GLU ARG PRO GLU GLY SEQRES 25 B 384 ILE ALA ALA GLY CYS ALA ARG LEU VAL GLY THR ASP PRO SEQRES 26 B 384 ALA LEU ILE VAL LYS GLU VAL GLY ARG LEU LEU ASP ASP SEQRES 27 B 384 PRO GLU ALA TYR GLU ALA MET ARG ARG PRO GLY ILE VAL SEQRES 28 B 384 CYS TYR GLY GLU GLY ASP ALA ALA ALA ARG CYS LEU GLU SEQRES 29 B 384 ALA LEU ARG GLU ARG TRP LEU SER SER PRO ASP ALA SER SEQRES 30 B 384 ALA GLY LEU ARG THR TYR ARG HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *158(H2 O) HELIX 1 AA1 THR A 11 ASP A 28 1 18 HELIX 2 AA2 GLU A 47 GLY A 53 1 7 HELIX 3 AA3 ARG A 68 LEU A 80 1 13 HELIX 4 AA4 LEU A 80 GLU A 87 1 8 HELIX 5 AA5 THR A 98 GLU A 111 1 14 HELIX 6 AA6 PRO A 132 ALA A 144 1 13 HELIX 7 AA7 THR A 151 ALA A 160 1 10 HELIX 8 AA8 ARG A 164 ASP A 166 5 3 HELIX 9 AA9 THR A 174 LEU A 183 1 10 HELIX 10 AB1 ARG A 192 GLU A 199 1 8 HELIX 11 AB2 ARG A 210 TRP A 214 5 5 HELIX 12 AB3 GLY A 215 ARG A 232 1 18 HELIX 13 AB4 ASN A 244 SER A 256 1 13 HELIX 14 AB5 ARG A 268 ALA A 279 1 12 HELIX 15 AB6 SER A 286 LEU A 296 1 11 HELIX 16 AB7 ARG A 309 ALA A 315 1 7 HELIX 17 AB8 ASP A 324 ASP A 338 1 15 HELIX 18 AB9 ASP A 338 ARG A 347 1 10 HELIX 19 AC1 ASP A 357 TRP A 370 1 14 HELIX 20 AC2 THR B 11 ASP B 28 1 18 HELIX 21 AC3 ARG B 68 LEU B 80 1 13 HELIX 22 AC4 LEU B 80 GLU B 87 1 8 HELIX 23 AC5 THR B 98 GLU B 111 1 14 HELIX 24 AC6 PRO B 132 ALA B 144 1 13 HELIX 25 AC7 THR B 151 ALA B 160 1 10 HELIX 26 AC8 ARG B 164 ASP B 166 5 3 HELIX 27 AC9 THR B 174 LEU B 181 1 8 HELIX 28 AD1 GLU B 193 GLU B 199 1 7 HELIX 29 AD2 ARG B 210 TRP B 214 5 5 HELIX 30 AD3 GLY B 215 ARG B 232 1 18 HELIX 31 AD4 ASN B 244 SER B 256 1 13 HELIX 32 AD5 ARG B 268 ALA B 279 1 12 HELIX 33 AD6 SER B 286 LEU B 296 1 11 HELIX 34 AD7 ARG B 309 ALA B 315 1 7 HELIX 35 AD8 ASP B 324 ASP B 338 1 15 HELIX 36 AD9 ASP B 338 ARG B 347 1 10 HELIX 37 AE1 ASP B 357 TRP B 370 1 14 SHEET 1 AA1 7 HIS A 58 ASN A 59 0 SHEET 2 AA1 7 PHE A 31 THR A 37 1 N THR A 37 O HIS A 58 SHEET 3 AA1 7 LEU A 3 TYR A 9 1 N VAL A 5 O VAL A 34 SHEET 4 AA1 7 VAL A 91 GLN A 95 1 O VAL A 91 N GLY A 6 SHEET 5 AA1 7 VAL A 115 LEU A 118 1 O LEU A 118 N VAL A 94 SHEET 6 AA1 7 LEU A 146 ALA A 149 1 O PHE A 148 N HIS A 117 SHEET 7 AA1 7 VAL A 168 VAL A 170 1 O TYR A 169 N HIS A 147 SHEET 1 AA2 6 VAL A 261 CYS A 264 0 SHEET 2 AA2 6 LEU A 235 PRO A 240 1 N PHE A 237 O LEU A 262 SHEET 3 AA2 6 GLN A 202 THR A 207 1 N VAL A 204 O ARG A 236 SHEET 4 AA2 6 LEU A 281 THR A 284 1 O LEU A 283 N LEU A 205 SHEET 5 AA2 6 VAL A 300 VAL A 302 1 O LEU A 301 N VAL A 282 SHEET 6 AA2 6 ALA A 318 LEU A 320 1 O ARG A 319 N VAL A 302 SHEET 1 AA3 7 PRO B 56 ASN B 59 0 SHEET 2 AA3 7 PHE B 31 THR B 37 1 N ILE B 35 O ARG B 57 SHEET 3 AA3 7 LEU B 3 TYR B 9 1 N VAL B 5 O VAL B 34 SHEET 4 AA3 7 VAL B 91 GLN B 95 1 O VAL B 91 N GLY B 6 SHEET 5 AA3 7 VAL B 115 LEU B 118 1 O LEU B 118 N VAL B 94 SHEET 6 AA3 7 LEU B 146 ALA B 149 1 O PHE B 148 N HIS B 117 SHEET 7 AA3 7 VAL B 168 VAL B 170 1 O TYR B 169 N HIS B 147 SHEET 1 AA4 6 VAL B 261 CYS B 264 0 SHEET 2 AA4 6 LEU B 235 PRO B 240 1 N PHE B 237 O LEU B 262 SHEET 3 AA4 6 GLN B 202 THR B 207 1 N VAL B 204 O VAL B 238 SHEET 4 AA4 6 LEU B 281 THR B 284 1 O LEU B 283 N LEU B 205 SHEET 5 AA4 6 VAL B 300 VAL B 302 1 O LEU B 301 N VAL B 282 SHEET 6 AA4 6 ALA B 318 LEU B 320 1 O ARG B 319 N VAL B 302 LINK O LEU A 25 NA NA A 401 1555 1555 2.73 LINK O ASP A 26 NA NA A 401 1555 1555 2.53 LINK O ASP A 28 NA NA A 401 1555 1555 2.42 LINK O PHE A 31 NA NA A 401 1555 1555 2.34 LINK NA NA A 401 O HOH A 528 1555 1555 2.67 LINK O LEU B 25 NA NA B 401 1555 1555 2.80 LINK O ASP B 26 NA NA B 401 1555 1555 2.63 LINK O ASP B 28 NA NA B 401 1555 1555 2.52 LINK O PHE B 31 NA NA B 401 1555 1555 2.27 CISPEP 1 GLU A 129 PRO A 130 0 -2.13 CISPEP 2 PHE A 131 PRO A 132 0 1.58 CISPEP 3 GLU B 129 PRO B 130 0 -1.98 CISPEP 4 PHE B 131 PRO B 132 0 1.41 CRYST1 112.349 106.052 94.343 90.00 124.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008901 0.000000 0.006202 0.00000 SCALE2 0.000000 0.009429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012919 0.00000