HEADER ANTIVIRAL PROTEIN 18-NOV-21 7W0S TITLE TRIM7 IN COMPLEX WITH C-TERMINAL PEPTIDE OF 2C COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM7; COMPND 3 CHAIN: B, C, E; COMPND 4 SYNONYM: GLYCOGENIN-INTERACTING PROTEIN,RING FINGER PROTEIN 90, COMPND 5 TRIPARTITE MOTIF-CONTAINING PROTEIN 7; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE; COMPND 10 CHAIN: A, D, F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM7, GNIP, RNF90; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS; SOURCE 11 ORGANISM_TAXID: 12066 KEYWDS ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,X.LIANG,X.Z.LI REVDAT 4 29-NOV-23 7W0S 1 REMARK REVDAT 3 09-NOV-22 7W0S 1 JRNL REVDAT 2 26-OCT-22 7W0S 1 JRNL REVDAT 1 10-AUG-22 7W0S 0 JRNL AUTH X.LIANG,J.XIAO,X.LI,Y.LIU,Y.LU,Y.WEN,Z.LI,X.CHE,Y.MA, JRNL AUTH 2 X.ZHANG,Y.ZHANG,D.JIAN,P.WANG,C.XUAN,G.YU,L.LI,H.ZHANG JRNL TITL A C-TERMINAL GLUTAMINE RECOGNITION MECHANISM REVEALED BY E3 JRNL TITL 2 LIGASE TRIM7 STRUCTURES. JRNL REF NAT.CHEM.BIOL. V. 18 1214 2022 JRNL REFN ESSN 1552-4469 JRNL PMID 35982226 JRNL DOI 10.1038/S41589-022-01128-X REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC6_4061 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 107159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 5112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3400 - 4.3400 0.99 3907 119 0.1703 0.1953 REMARK 3 2 4.3400 - 3.4500 0.99 3715 201 0.1370 0.1375 REMARK 3 3 3.4500 - 3.0100 1.00 3724 212 0.1423 0.1557 REMARK 3 4 3.0100 - 2.7400 0.99 3711 178 0.1472 0.1724 REMARK 3 5 2.7300 - 2.5400 0.99 3692 183 0.1458 0.1613 REMARK 3 6 2.5400 - 2.3900 1.00 3723 195 0.1409 0.1645 REMARK 3 7 2.3900 - 2.2700 0.99 3794 109 0.1368 0.1723 REMARK 3 8 2.2700 - 2.1700 0.99 3690 183 0.1375 0.1591 REMARK 3 9 2.1700 - 2.0900 0.99 3657 213 0.1382 0.1581 REMARK 3 10 2.0900 - 2.0200 0.99 3709 177 0.1430 0.1740 REMARK 3 11 2.0200 - 1.9500 0.99 3666 216 0.1451 0.1575 REMARK 3 12 1.9500 - 1.9000 0.99 3722 141 0.1411 0.1654 REMARK 3 13 1.9000 - 1.8500 1.00 3674 192 0.1429 0.1578 REMARK 3 14 1.8500 - 1.8000 0.99 3625 210 0.1465 0.1659 REMARK 3 15 1.8000 - 1.7600 0.99 3708 164 0.1586 0.1794 REMARK 3 16 1.7600 - 1.7200 0.99 3649 213 0.1662 0.1931 REMARK 3 17 1.7200 - 1.6900 0.99 3656 233 0.1681 0.1831 REMARK 3 18 1.6900 - 1.6600 0.99 3615 242 0.1806 0.2005 REMARK 3 19 1.6600 - 1.6300 0.99 3676 193 0.1856 0.1926 REMARK 3 20 1.6300 - 1.6000 1.00 3666 205 0.1676 0.1926 REMARK 3 21 1.6000 - 1.5700 0.98 3662 182 0.1697 0.1713 REMARK 3 22 1.5700 - 1.5500 0.94 3490 169 0.1642 0.1918 REMARK 3 23 1.5500 - 1.5300 0.91 3351 154 0.1663 0.1825 REMARK 3 24 1.5300 - 1.5100 0.86 3203 162 0.1713 0.2040 REMARK 3 25 1.5100 - 1.4800 0.80 2954 173 0.1775 0.1975 REMARK 3 26 1.4800 - 1.4700 0.73 2689 127 0.1796 0.2038 REMARK 3 27 1.4700 - 1.4500 0.68 2504 121 0.1833 0.2146 REMARK 3 28 1.4500 - 1.4300 0.61 2289 98 0.1949 0.2190 REMARK 3 29 1.4300 - 1.4100 0.55 2065 79 0.2031 0.2734 REMARK 3 30 1.4100 - 1.4000 0.49 1861 68 0.2290 0.2057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.119 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.716 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4311 REMARK 3 ANGLE : 1.087 5846 REMARK 3 CHIRALITY : 0.087 624 REMARK 3 PLANARITY : 0.011 765 REMARK 3 DIHEDRAL : 7.859 592 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 6.7792 -16.8108 20.2705 REMARK 3 T TENSOR REMARK 3 T11: 0.1184 T22: 0.0954 REMARK 3 T33: 0.1133 T12: 0.0077 REMARK 3 T13: 0.0003 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.1955 L22: 0.0940 REMARK 3 L33: 0.1834 L12: 0.0271 REMARK 3 L13: -0.0322 L23: -0.0408 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0272 S13: -0.0027 REMARK 3 S21: 0.0044 S22: 0.0125 S23: -0.0098 REMARK 3 S31: -0.0121 S32: 0.0014 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7W0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 42.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, POTASSIUM NITRATE, LIQUID REMARK 280 DIFFUSION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.73950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 338 REMARK 465 GLU B 339 REMARK 465 GLU B 340 REMARK 465 LYS B 341 REMARK 465 VAL B 342 REMARK 465 VAL A 320 REMARK 465 GLY A 321 REMARK 465 THR A 322 REMARK 465 THR A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 LYS C 338 REMARK 465 GLU C 339 REMARK 465 GLU C 340 REMARK 465 LYS C 341 REMARK 465 VAL C 342 REMARK 465 VAL D 320 REMARK 465 GLY D 321 REMARK 465 THR D 322 REMARK 465 THR D 323 REMARK 465 LEU D 324 REMARK 465 LYS E 338 REMARK 465 GLU E 339 REMARK 465 GLU E 340 REMARK 465 LYS E 341 REMARK 465 VAL E 342 REMARK 465 VAL F 320 REMARK 465 GLY F 321 REMARK 465 THR F 322 REMARK 465 THR F 323 REMARK 465 LEU F 324 REMARK 465 GLU F 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG E 369 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 478 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 360 HH22 ARG C 508 1.43 REMARK 500 HH22 ARG E 365 O HOH E 702 1.52 REMARK 500 OE2 GLU B 343 HZ1 LYS B 362 1.55 REMARK 500 O HOH E 814 O HOH E 860 1.71 REMARK 500 O HOH C 858 O HOH C 875 1.92 REMARK 500 O HOH E 756 O HOH E 857 1.93 REMARK 500 O HOH C 754 O HOH C 878 1.93 REMARK 500 O HOH B 921 O HOH B 926 1.94 REMARK 500 O HOH E 718 O HOH E 726 1.94 REMARK 500 O HOH C 872 O HOH C 884 1.95 REMARK 500 O HOH E 852 O HOH E 867 1.95 REMARK 500 O HOH E 853 O HOH E 862 2.01 REMARK 500 NH2 ARG E 508 O HOH E 701 2.02 REMARK 500 O HOH B 715 O HOH E 722 2.03 REMARK 500 OE2 GLU B 343 NZ LYS B 362 2.05 REMARK 500 OE1 GLU C 368 O HOH C 701 2.06 REMARK 500 OE1 GLU C 478 O HOH C 702 2.10 REMARK 500 O HOH B 791 O HOH B 881 2.13 REMARK 500 O HOH C 759 O HOH C 846 2.13 REMARK 500 N GLU C 343 O HOH C 703 2.13 REMARK 500 OE1 GLU D 325 O HOH D 401 2.14 REMARK 500 OE1 GLU C 449 O HOH C 704 2.14 REMARK 500 O HOH E 808 O HOH E 829 2.15 REMARK 500 OD1 ASP B 347 O HOH B 701 2.17 REMARK 500 O HOH C 851 O HOH C 898 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 849 O HOH E 755 1655 1.54 REMARK 500 O HOH D 401 O HOH E 845 2656 1.75 REMARK 500 O HOH C 819 O HOH E 727 1655 1.80 REMARK 500 O HOH C 894 O HOH E 856 1655 1.88 REMARK 500 O HOH B 843 O HOH B 872 2545 1.91 REMARK 500 O HOH C 885 O HOH E 827 2656 2.01 REMARK 500 O HOH C 885 O HOH E 876 2656 2.08 REMARK 500 O HOH C 719 O HOH E 761 2656 2.10 REMARK 500 O HOH C 837 O HOH C 900 2646 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 480 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 382 -56.03 -133.69 REMARK 500 SER B 454 58.85 -91.27 REMARK 500 TYR B 484 148.84 -170.08 REMARK 500 THR C 382 -55.83 -132.73 REMARK 500 SER C 454 67.02 -110.38 REMARK 500 TYR C 484 148.49 -170.09 REMARK 500 THR E 382 -53.29 -134.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 927 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH C 928 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH C 929 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH C 930 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH D 406 DISTANCE = 7.23 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7W0Q RELATED DB: PDB REMARK 900 RELATED ID: 7W0T RELATED DB: PDB DBREF 7W0S B 338 511 UNP Q9C029 TRIM7_HUMAN 338 511 DBREF 7W0S A 320 329 PDB 7W0S 7W0S 320 329 DBREF 7W0S C 338 511 UNP Q9C029 TRIM7_HUMAN 338 511 DBREF 7W0S D 320 329 PDB 7W0S 7W0S 320 329 DBREF 7W0S E 338 511 UNP Q9C029 TRIM7_HUMAN 338 511 DBREF 7W0S F 320 329 PDB 7W0S 7W0S 320 329 SEQRES 1 B 174 LYS GLU GLU LYS VAL GLU LEU THR LEU ASP PRO ASP THR SEQRES 2 B 174 ALA ASN PRO ARG LEU ILE LEU SER LEU ASP LEU LYS GLY SEQRES 3 B 174 VAL ARG LEU GLY GLU ARG ALA GLN ASP LEU PRO ASN HIS SEQRES 4 B 174 PRO CYS ARG PHE ASP THR ASN THR ARG VAL LEU ALA SER SEQRES 5 B 174 CYS GLY PHE SER SER GLY ARG HIS HIS TRP GLU VAL GLU SEQRES 6 B 174 VAL GLY SER LYS ASP GLY TRP ALA PHE GLY VAL ALA ARG SEQRES 7 B 174 GLU SER VAL ARG ARG LYS GLY LEU THR PRO PHE THR PRO SEQRES 8 B 174 GLU GLU GLY VAL TRP ALA LEU GLN LEU ASN GLY GLY GLN SEQRES 9 B 174 TYR TRP ALA VAL THR SER PRO GLU ARG SER PRO LEU SER SEQRES 10 B 174 CYS GLY HIS LEU SER ARG VAL ARG VAL ALA LEU ASP LEU SEQRES 11 B 174 GLU VAL GLY ALA VAL SER PHE TYR ALA VAL GLU ASP MET SEQRES 12 B 174 ARG HIS LEU TYR THR PHE ARG VAL ASN PHE GLN GLU ARG SEQRES 13 B 174 VAL PHE PRO LEU PHE SER VAL CYS SER THR GLY THR TYR SEQRES 14 B 174 LEU ARG ILE TRP PRO SEQRES 1 A 10 VAL GLY THR THR LEU GLU ALA LEU PHE GLN SEQRES 1 C 174 LYS GLU GLU LYS VAL GLU LEU THR LEU ASP PRO ASP THR SEQRES 2 C 174 ALA ASN PRO ARG LEU ILE LEU SER LEU ASP LEU LYS GLY SEQRES 3 C 174 VAL ARG LEU GLY GLU ARG ALA GLN ASP LEU PRO ASN HIS SEQRES 4 C 174 PRO CYS ARG PHE ASP THR ASN THR ARG VAL LEU ALA SER SEQRES 5 C 174 CYS GLY PHE SER SER GLY ARG HIS HIS TRP GLU VAL GLU SEQRES 6 C 174 VAL GLY SER LYS ASP GLY TRP ALA PHE GLY VAL ALA ARG SEQRES 7 C 174 GLU SER VAL ARG ARG LYS GLY LEU THR PRO PHE THR PRO SEQRES 8 C 174 GLU GLU GLY VAL TRP ALA LEU GLN LEU ASN GLY GLY GLN SEQRES 9 C 174 TYR TRP ALA VAL THR SER PRO GLU ARG SER PRO LEU SER SEQRES 10 C 174 CYS GLY HIS LEU SER ARG VAL ARG VAL ALA LEU ASP LEU SEQRES 11 C 174 GLU VAL GLY ALA VAL SER PHE TYR ALA VAL GLU ASP MET SEQRES 12 C 174 ARG HIS LEU TYR THR PHE ARG VAL ASN PHE GLN GLU ARG SEQRES 13 C 174 VAL PHE PRO LEU PHE SER VAL CYS SER THR GLY THR TYR SEQRES 14 C 174 LEU ARG ILE TRP PRO SEQRES 1 D 10 VAL GLY THR THR LEU GLU ALA LEU PHE GLN SEQRES 1 E 174 LYS GLU GLU LYS VAL GLU LEU THR LEU ASP PRO ASP THR SEQRES 2 E 174 ALA ASN PRO ARG LEU ILE LEU SER LEU ASP LEU LYS GLY SEQRES 3 E 174 VAL ARG LEU GLY GLU ARG ALA GLN ASP LEU PRO ASN HIS SEQRES 4 E 174 PRO CYS ARG PHE ASP THR ASN THR ARG VAL LEU ALA SER SEQRES 5 E 174 CYS GLY PHE SER SER GLY ARG HIS HIS TRP GLU VAL GLU SEQRES 6 E 174 VAL GLY SER LYS ASP GLY TRP ALA PHE GLY VAL ALA ARG SEQRES 7 E 174 GLU SER VAL ARG ARG LYS GLY LEU THR PRO PHE THR PRO SEQRES 8 E 174 GLU GLU GLY VAL TRP ALA LEU GLN LEU ASN GLY GLY GLN SEQRES 9 E 174 TYR TRP ALA VAL THR SER PRO GLU ARG SER PRO LEU SER SEQRES 10 E 174 CYS GLY HIS LEU SER ARG VAL ARG VAL ALA LEU ASP LEU SEQRES 11 E 174 GLU VAL GLY ALA VAL SER PHE TYR ALA VAL GLU ASP MET SEQRES 12 E 174 ARG HIS LEU TYR THR PHE ARG VAL ASN PHE GLN GLU ARG SEQRES 13 E 174 VAL PHE PRO LEU PHE SER VAL CYS SER THR GLY THR TYR SEQRES 14 E 174 LEU ARG ILE TRP PRO SEQRES 1 F 10 VAL GLY THR THR LEU GLU ALA LEU PHE GLN HET NO3 B 601 4 HET NO3 B 602 4 HET GOL B 603 13 HET NO3 C 601 4 HET NO3 C 602 4 HET NO3 C 603 4 HET NO3 C 604 4 HET PEG C 605 17 HET NO3 E 601 4 HET GOL E 602 14 HET GOL E 603 12 HET GOL E 604 13 HET NO3 E 605 4 HETNAM NO3 NITRATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 NO3 8(N O3 1-) FORMUL 9 GOL 4(C3 H8 O3) FORMUL 14 PEG C4 H10 O3 FORMUL 20 HOH *672(H2 O) HELIX 1 AA1 ASP B 347 ALA B 351 5 5 HELIX 2 AA2 THR B 427 GLU B 430 5 4 HELIX 3 AA3 THR C 427 GLU C 430 5 4 HELIX 4 AA4 GLU D 325 GLN D 329 5 5 HELIX 5 AA5 ASP E 347 ALA E 351 5 5 HELIX 6 AA6 THR E 427 GLU E 430 5 4 SHEET 1 AA1 7 LEU B 355 LEU B 357 0 SHEET 2 AA1 7 GLY B 363 LEU B 366 -1 O ARG B 365 N ILE B 356 SHEET 3 AA1 7 LEU B 507 TRP B 510 -1 O LEU B 507 N VAL B 364 SHEET 4 AA1 7 ARG B 396 VAL B 403 -1 N GLU B 402 O ARG B 508 SHEET 5 AA1 7 ARG B 460 ASP B 466 -1 O VAL B 463 N TRP B 399 SHEET 6 AA1 7 ALA B 471 ALA B 476 -1 O ALA B 471 N ASP B 466 SHEET 7 AA1 7 HIS B 482 ARG B 487 -1 O LEU B 483 N PHE B 474 SHEET 1 AA2 6 ARG B 385 LEU B 387 0 SHEET 2 AA2 6 VAL B 494 VAL B 500 -1 O PHE B 498 N VAL B 386 SHEET 3 AA2 6 TRP B 409 ARG B 415 -1 N ALA B 414 O PHE B 495 SHEET 4 AA2 6 VAL B 432 ASN B 438 -1 O TRP B 433 N VAL B 413 SHEET 5 AA2 6 GLN B 441 ALA B 444 -1 O TRP B 443 N GLN B 436 SHEET 6 AA2 6 SER B 451 LEU B 453 -1 O LEU B 453 N TYR B 442 SHEET 1 AA3 7 LEU C 355 LEU C 357 0 SHEET 2 AA3 7 GLY C 363 LEU C 366 -1 O ARG C 365 N ILE C 356 SHEET 3 AA3 7 LEU C 507 TRP C 510 -1 O LEU C 507 N VAL C 364 SHEET 4 AA3 7 ARG C 396 VAL C 403 -1 N GLU C 402 O ARG C 508 SHEET 5 AA3 7 ARG C 460 ASP C 466 -1 O VAL C 463 N TRP C 399 SHEET 6 AA3 7 ALA C 471 ALA C 476 -1 O ALA C 471 N ASP C 466 SHEET 7 AA3 7 ARG C 481 ARG C 487 -1 O LEU C 483 N PHE C 474 SHEET 1 AA4 6 ARG C 385 LEU C 387 0 SHEET 2 AA4 6 VAL C 494 VAL C 500 -1 O PHE C 498 N VAL C 386 SHEET 3 AA4 6 TRP C 409 ARG C 415 -1 N ALA C 414 O PHE C 495 SHEET 4 AA4 6 VAL C 432 ASN C 438 -1 O TRP C 433 N VAL C 413 SHEET 5 AA4 6 GLN C 441 ALA C 444 -1 O TRP C 443 N GLN C 436 SHEET 6 AA4 6 SER C 451 PRO C 452 -1 O SER C 451 N ALA C 444 SHEET 1 AA5 7 LEU E 355 LEU E 357 0 SHEET 2 AA5 7 GLY E 363 LEU E 366 -1 O ARG E 365 N ILE E 356 SHEET 3 AA5 7 LEU E 507 TRP E 510 -1 O LEU E 507 N VAL E 364 SHEET 4 AA5 7 ARG E 396 VAL E 403 -1 N GLU E 402 O ARG E 508 SHEET 5 AA5 7 ARG E 460 ASP E 466 -1 O LEU E 465 N HIS E 397 SHEET 6 AA5 7 ALA E 471 ALA E 476 -1 O ALA E 471 N ASP E 466 SHEET 7 AA5 7 HIS E 482 ARG E 487 -1 O LEU E 483 N PHE E 474 SHEET 1 AA6 6 ARG E 385 LEU E 387 0 SHEET 2 AA6 6 VAL E 494 VAL E 500 -1 O PHE E 498 N VAL E 386 SHEET 3 AA6 6 TRP E 409 ARG E 415 -1 N ALA E 414 O PHE E 495 SHEET 4 AA6 6 VAL E 432 ASN E 438 -1 O TRP E 433 N VAL E 413 SHEET 5 AA6 6 GLN E 441 ALA E 444 -1 O TRP E 443 N GLN E 436 SHEET 6 AA6 6 SER E 451 LEU E 453 -1 O LEU E 453 N TYR E 442 CISPEP 1 SER B 447 PRO B 448 0 2.05 CISPEP 2 SER C 447 PRO C 448 0 2.05 CISPEP 3 SER E 447 PRO E 448 0 3.40 CRYST1 79.131 53.479 80.873 90.00 118.84 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012637 0.000000 0.006959 0.00000 SCALE2 0.000000 0.018699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014116 0.00000