HEADER HYDROLASE 23-NOV-21 7W2I TITLE CRYSTAL STRUCTURE OF LOG (RV1205) FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE; COMPND 8 CHAIN: B, C, D; COMPND 9 EC: 3.2.2.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: YVDD, E5M05_07430, E5M52_06270, ERS007670_00485, SOURCE 5 ERS007683_01414, ERS007703_01029, ERS007720_04465, ERS007722_04210, SOURCE 6 ERS013440_03167, ERS024276_02377, ERS027646_02317, ERS027661_02284, SOURCE 7 FPJ30_06615, FPJ31_06635, FPJ32_06600, FPJ33_06635, FPJ34_06605, SOURCE 8 FPJ35_06645, FPJ36_06610, FPJ37_06625, FPJ38_06685, FPJ39_06605, SOURCE 9 FPJ40_06630, FPJ41_06610, FPJ42_06600, FPJ43_06625, FPJ44_06630, SOURCE 10 FPJ45_06605, FPJ46_06605, FPJ47_06620, FPJ48_06590, FPJ49_06625, SOURCE 11 FPJ50_06605, FPJ51_06600, FPJ52_06615, FPJ53_06605, FPJ54_06615, SOURCE 12 FPJ55_06630, FPJ56_06605, FPJ57_06600, FPJ58_06625, FPJ59_06615, SOURCE 13 FPJ60_06630, FPJ61_06605, FPJ62_06605, FPJ63_06620, FPJ64_06630, SOURCE 14 FPJ65_06615, FPJ66_06605, FPJ67_06650, FPJ69_06650, FPJ70_06650, SOURCE 15 FPJ71_06650, FPJ72_05390, FPJ73_06605, FPJ76_06570, FPJ77_06635, SOURCE 16 FPJ78_06620, FPJ79_06645, FPJ80_06625, FPJ81_06635, FPJ82_06640, SOURCE 17 FPJ83_14970, FPJ84_06625, FPJ85_14960, FPJ86_14950, FPJ87_14955, SOURCE 18 FPJ88_06580, FPJ89_06625, FPJ90_06600, FPJ91_06645, FPJ92_06600, SOURCE 19 FPJ93_06635, FPJ94_05385, FPJ95_06625, FPJ96_06640, FPJ97_06645, SOURCE 20 FPJ98_06615, FPJ99_06640, FPK00_06610, FPK01_06670, FPK02_06615, SOURCE 21 FPK03_06630, FPK04_06630, FPK05_06625, FPK06_06610, FPK07_06620, SOURCE 22 FPK08_06630, FPK09_06625, FPK10_05385, FPK11_06625, FPK12_06590, SOURCE 23 FPK13_06620, FPK14_06625, FPK16_06620, FPK17_06620, FPK18_06620, SOURCE 24 FPK19_06635, FPK20_06635, FPK21_06605, FPK22_06630, HRD52_06340, SOURCE 25 HRD53_06340, SAMEA2683035_01466; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 MOL_ID: 2; SOURCE 29 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 30 ORGANISM_TAXID: 1773; SOURCE 31 GENE: YVDD, E5M05_07430, E5M52_06270, ERS007670_00485, SOURCE 32 ERS007683_01414, ERS007703_01029, ERS007720_04465, ERS007722_04210, SOURCE 33 ERS013440_03167, ERS024276_02377, ERS027646_02317, ERS027661_02284, SOURCE 34 FPJ30_06615, FPJ31_06635, FPJ32_06600, FPJ33_06635, FPJ34_06605, SOURCE 35 FPJ35_06645, FPJ36_06610, FPJ37_06625, FPJ38_06685, FPJ39_06605, SOURCE 36 FPJ40_06630, FPJ41_06610, FPJ42_06600, FPJ43_06625, FPJ44_06630, SOURCE 37 FPJ45_06605, FPJ46_06605, FPJ47_06620, FPJ48_06590, FPJ49_06625, SOURCE 38 FPJ50_06605, FPJ51_06600, FPJ52_06615, FPJ53_06605, FPJ54_06615, SOURCE 39 FPJ55_06630, FPJ56_06605, FPJ57_06600, FPJ58_06625, FPJ59_06615, SOURCE 40 FPJ60_06630, FPJ61_06605, FPJ62_06605, FPJ63_06620, FPJ64_06630, SOURCE 41 FPJ65_06615, FPJ66_06605, FPJ67_06650, FPJ69_06650, FPJ70_06650, SOURCE 42 FPJ71_06650, FPJ72_05390, FPJ73_06605, FPJ76_06570, FPJ77_06635, SOURCE 43 FPJ78_06620, FPJ79_06645, FPJ80_06625, FPJ81_06635, FPJ82_06640, SOURCE 44 FPJ83_14970, FPJ84_06625, FPJ85_14960, FPJ86_14950, FPJ87_14955, SOURCE 45 FPJ88_06580, FPJ89_06625, FPJ90_06600, FPJ91_06645, FPJ92_06600, SOURCE 46 FPJ93_06635, FPJ94_05385, FPJ95_06625, FPJ96_06640, FPJ97_06645, SOURCE 47 FPJ98_06615, FPJ99_06640, FPK00_06610, FPK01_06670, FPK02_06615, SOURCE 48 FPK03_06630, FPK04_06630, FPK05_06625, FPK06_06610, FPK07_06620, SOURCE 49 FPK08_06630, FPK09_06625, FPK10_05385, FPK11_06625, FPK12_06590, SOURCE 50 FPK13_06620, FPK14_06625, FPK16_06620, FPK17_06620, FPK18_06620, SOURCE 51 FPK19_06635, FPK20_06635, FPK21_06605, FPK22_06630, HRD52_06340, SOURCE 52 HRD53_06340, SAMEA2683035_01466; SOURCE 53 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 54 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LOG, RV1205, MYCOBACTERIUM TUBERCULOSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SHANG,G.ZHANG REVDAT 2 29-NOV-23 7W2I 1 REMARK REVDAT 1 06-JUL-22 7W2I 0 JRNL AUTH L.SHANG,G.LI,Q.LIN,M.OU,J.LIANG,G.XIAO,Z.WANG,S.CUI,T.ZHANG, JRNL AUTH 2 L.LIU,G.ZHANG JRNL TITL CRYSTAL STRUCTURE OF THE CYTOKININ-PRODUCING ENZYME "LONELY JRNL TITL 2 GUY" (LOG) FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 598 113 2022 JRNL REFN ESSN 1090-2104 JRNL PMID 35158209 JRNL DOI 10.1016/J.BBRC.2022.01.103 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 61925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 726 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5558 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5154 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7597 ; 1.614 ; 1.624 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11834 ; 1.449 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 6.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;33.774 ;21.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 811 ;12.801 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 712 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6334 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1226 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7W2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65281 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3QUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1 M TRIS PH 8.5, 25% (W/V) PEG 3,350., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.97900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.47650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.98800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.47650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.97900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.98800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 -149.21 57.36 REMARK 500 SER B 20 -64.93 -122.67 REMARK 500 SER B 20 -63.85 -123.43 REMARK 500 SER B 52 -149.20 60.88 REMARK 500 HIS C 23 123.34 -39.47 REMARK 500 SER C 52 -145.08 60.05 REMARK 500 SER D 20 -56.01 -121.53 REMARK 500 SER D 20 -55.66 -121.68 REMARK 500 SER D 52 -142.49 58.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 468 DISTANCE = 5.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD1 REMARK 620 2 ASP A 128 OD2 133.6 REMARK 620 3 EDO A 204 O1 122.4 100.5 REMARK 620 4 HOH A 401 O 80.8 67.4 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 100 OE1 REMARK 620 2 GLU B 103 OE1 101.4 REMARK 620 3 ASP B 128 OD2 177.9 78.3 REMARK 620 4 HOH B 318 O 91.5 100.6 90.7 REMARK 620 5 HOH B 360 O 95.2 75.6 82.7 172.9 REMARK 620 6 HOH B 379 O 97.4 140.9 81.7 113.0 68.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 124 O REMARK 620 2 ASP C 124 OD1 92.6 REMARK 620 3 ASP C 128 OD2 99.6 165.0 REMARK 620 4 HOH C 319 O 170.8 79.9 87.1 REMARK 620 5 HOH C 367 O 90.2 84.2 87.0 83.9 REMARK 620 6 HOH D 322 O 94.7 94.8 92.9 91.2 175.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 344 O REMARK 620 2 ASP D 124 O 93.8 REMARK 620 3 ASP D 124 OD1 90.3 97.8 REMARK 620 4 ASP D 128 OD2 92.6 107.6 154.2 REMARK 620 5 HOH D 330 O 84.2 172.9 75.4 79.4 REMARK 620 6 HOH D 366 O 169.3 93.2 96.7 77.6 89.7 REMARK 620 N 1 2 3 4 5 DBREF1 7W2I A 5 187 UNP A0A045J166_MYCTX DBREF2 7W2I A A0A045J166 5 187 DBREF1 7W2I B 11 187 UNP A0A045J166_MYCTX DBREF2 7W2I B A0A045J166 11 187 DBREF1 7W2I C 11 187 UNP A0A045J166_MYCTX DBREF2 7W2I C A0A045J166 11 187 DBREF1 7W2I D 11 187 UNP A0A045J166_MYCTX DBREF2 7W2I D A0A045J166 11 187 SEQRES 1 A 183 ILE ASP ILE THR GLY ASP TRP THR VAL ALA VAL TYR CYS SEQRES 2 A 183 ALA ALA SER PRO THR HIS ALA GLU LEU LEU GLU LEU ALA SEQRES 3 A 183 ALA GLU VAL GLY ALA ALA ILE ALA GLY ARG GLY TRP THR SEQRES 4 A 183 LEU VAL TRP GLY GLY GLY HIS VAL SER ALA MET GLY ALA SEQRES 5 A 183 VAL ALA SER ALA ALA ARG ALA CYS GLY GLY TRP THR VAL SEQRES 6 A 183 GLY VAL ILE PRO LYS MET LEU VAL TYR ARG GLU LEU ALA SEQRES 7 A 183 ASP HIS ASP ALA ASP GLU LEU ILE VAL THR ASP THR MET SEQRES 8 A 183 TRP GLU ARG LYS GLN ILE MET GLU ASP ARG SER ASP ALA SEQRES 9 A 183 PHE ILE VAL LEU PRO GLY GLY VAL GLY THR LEU ASP GLU SEQRES 10 A 183 LEU PHE ASP ALA TRP THR ASP GLY TYR LEU GLY THR HIS SEQRES 11 A 183 ASP LYS PRO ILE VAL MET VAL ASP PRO TRP GLY HIS PHE SEQRES 12 A 183 ASP GLY LEU ARG ALA TRP LEU ASN GLY LEU LEU ASP THR SEQRES 13 A 183 GLY TYR VAL SER PRO THR ALA MET GLU ARG LEU VAL VAL SEQRES 14 A 183 VAL ASP ASN VAL LYS ASP ALA LEU ARG ALA CYS ALA PRO SEQRES 15 A 183 SER SEQRES 1 B 177 TRP THR VAL ALA VAL TYR CYS ALA ALA SER PRO THR HIS SEQRES 2 B 177 ALA GLU LEU LEU GLU LEU ALA ALA GLU VAL GLY ALA ALA SEQRES 3 B 177 ILE ALA GLY ARG GLY TRP THR LEU VAL TRP GLY GLY GLY SEQRES 4 B 177 HIS VAL SER ALA MET GLY ALA VAL ALA SER ALA ALA ARG SEQRES 5 B 177 ALA CYS GLY GLY TRP THR VAL GLY VAL ILE PRO LYS MET SEQRES 6 B 177 LEU VAL TYR ARG GLU LEU ALA ASP HIS ASP ALA ASP GLU SEQRES 7 B 177 LEU ILE VAL THR ASP THR MET TRP GLU ARG LYS GLN ILE SEQRES 8 B 177 MET GLU ASP ARG SER ASP ALA PHE ILE VAL LEU PRO GLY SEQRES 9 B 177 GLY VAL GLY THR LEU ASP GLU LEU PHE ASP ALA TRP THR SEQRES 10 B 177 ASP GLY TYR LEU GLY THR HIS ASP LYS PRO ILE VAL MET SEQRES 11 B 177 VAL ASP PRO TRP GLY HIS PHE ASP GLY LEU ARG ALA TRP SEQRES 12 B 177 LEU ASN GLY LEU LEU ASP THR GLY TYR VAL SER PRO THR SEQRES 13 B 177 ALA MET GLU ARG LEU VAL VAL VAL ASP ASN VAL LYS ASP SEQRES 14 B 177 ALA LEU ARG ALA CYS ALA PRO SER SEQRES 1 C 177 TRP THR VAL ALA VAL TYR CYS ALA ALA SER PRO THR HIS SEQRES 2 C 177 ALA GLU LEU LEU GLU LEU ALA ALA GLU VAL GLY ALA ALA SEQRES 3 C 177 ILE ALA GLY ARG GLY TRP THR LEU VAL TRP GLY GLY GLY SEQRES 4 C 177 HIS VAL SER ALA MET GLY ALA VAL ALA SER ALA ALA ARG SEQRES 5 C 177 ALA CYS GLY GLY TRP THR VAL GLY VAL ILE PRO LYS MET SEQRES 6 C 177 LEU VAL TYR ARG GLU LEU ALA ASP HIS ASP ALA ASP GLU SEQRES 7 C 177 LEU ILE VAL THR ASP THR MET TRP GLU ARG LYS GLN ILE SEQRES 8 C 177 MET GLU ASP ARG SER ASP ALA PHE ILE VAL LEU PRO GLY SEQRES 9 C 177 GLY VAL GLY THR LEU ASP GLU LEU PHE ASP ALA TRP THR SEQRES 10 C 177 ASP GLY TYR LEU GLY THR HIS ASP LYS PRO ILE VAL MET SEQRES 11 C 177 VAL ASP PRO TRP GLY HIS PHE ASP GLY LEU ARG ALA TRP SEQRES 12 C 177 LEU ASN GLY LEU LEU ASP THR GLY TYR VAL SER PRO THR SEQRES 13 C 177 ALA MET GLU ARG LEU VAL VAL VAL ASP ASN VAL LYS ASP SEQRES 14 C 177 ALA LEU ARG ALA CYS ALA PRO SER SEQRES 1 D 177 TRP THR VAL ALA VAL TYR CYS ALA ALA SER PRO THR HIS SEQRES 2 D 177 ALA GLU LEU LEU GLU LEU ALA ALA GLU VAL GLY ALA ALA SEQRES 3 D 177 ILE ALA GLY ARG GLY TRP THR LEU VAL TRP GLY GLY GLY SEQRES 4 D 177 HIS VAL SER ALA MET GLY ALA VAL ALA SER ALA ALA ARG SEQRES 5 D 177 ALA CYS GLY GLY TRP THR VAL GLY VAL ILE PRO LYS MET SEQRES 6 D 177 LEU VAL TYR ARG GLU LEU ALA ASP HIS ASP ALA ASP GLU SEQRES 7 D 177 LEU ILE VAL THR ASP THR MET TRP GLU ARG LYS GLN ILE SEQRES 8 D 177 MET GLU ASP ARG SER ASP ALA PHE ILE VAL LEU PRO GLY SEQRES 9 D 177 GLY VAL GLY THR LEU ASP GLU LEU PHE ASP ALA TRP THR SEQRES 10 D 177 ASP GLY TYR LEU GLY THR HIS ASP LYS PRO ILE VAL MET SEQRES 11 D 177 VAL ASP PRO TRP GLY HIS PHE ASP GLY LEU ARG ALA TRP SEQRES 12 D 177 LEU ASN GLY LEU LEU ASP THR GLY TYR VAL SER PRO THR SEQRES 13 D 177 ALA MET GLU ARG LEU VAL VAL VAL ASP ASN VAL LYS ASP SEQRES 14 D 177 ALA LEU ARG ALA CYS ALA PRO SER HET MG A 201 1 HET EDO A 202 4 HET PEG A 203 7 HET EDO A 204 4 HET MG B 201 1 HET MG C 201 1 HET EDO C 202 4 HET MG D 201 1 HET EDO D 202 4 HET GOL D 203 6 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MG 4(MG 2+) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 7 PEG C4 H10 O3 FORMUL 14 GOL C3 H8 O3 FORMUL 15 HOH *726(H2 O) HELIX 1 AA1 HIS A 23 ARG A 40 1 18 HELIX 2 AA2 VAL A 51 CYS A 64 1 14 HELIX 3 AA3 LYS A 74 TYR A 78 1 5 HELIX 4 AA4 THR A 94 SER A 106 1 13 HELIX 5 AA5 GLY A 115 GLY A 132 1 18 HELIX 6 AA6 PHE A 147 THR A 160 1 14 HELIX 7 AA7 SER A 164 LEU A 171 1 8 HELIX 8 AA8 ASN A 176 ALA A 185 1 10 HELIX 9 AA9 HIS B 23 ARG B 40 1 18 HELIX 10 AB1 VAL B 51 CYS B 64 1 14 HELIX 11 AB2 LYS B 74 TYR B 78 1 5 HELIX 12 AB3 THR B 94 SER B 106 1 13 HELIX 13 AB4 GLY B 115 LEU B 131 1 17 HELIX 14 AB5 PHE B 147 THR B 160 1 14 HELIX 15 AB6 SER B 164 ARG B 170 1 7 HELIX 16 AB7 ASN B 176 ALA B 185 1 10 HELIX 17 AB8 HIS C 23 ARG C 40 1 18 HELIX 18 AB9 VAL C 51 CYS C 64 1 14 HELIX 19 AC1 LYS C 74 TYR C 78 1 5 HELIX 20 AC2 THR C 94 SER C 106 1 13 HELIX 21 AC3 GLY C 115 GLY C 132 1 18 HELIX 22 AC4 PHE C 147 THR C 160 1 14 HELIX 23 AC5 SER C 164 ARG C 170 1 7 HELIX 24 AC6 ASN C 176 ALA C 185 1 10 HELIX 25 AC7 HIS D 23 ARG D 40 1 18 HELIX 26 AC8 VAL D 51 CYS D 64 1 14 HELIX 27 AC9 LYS D 74 ARG D 79 1 6 HELIX 28 AD1 THR D 94 SER D 106 1 13 HELIX 29 AD2 GLY D 115 GLY D 132 1 18 HELIX 30 AD3 PHE D 147 THR D 160 1 14 HELIX 31 AD4 SER D 164 LEU D 171 1 8 HELIX 32 AD5 ASN D 176 ALA D 185 1 10 SHEET 1 AA1 7 GLU A 88 THR A 92 0 SHEET 2 AA1 7 THR A 68 PRO A 73 1 N GLY A 70 O ILE A 90 SHEET 3 AA1 7 THR A 43 TRP A 46 1 N LEU A 44 O VAL A 69 SHEET 4 AA1 7 THR A 12 TYR A 16 1 N VAL A 13 O THR A 43 SHEET 5 AA1 7 ALA A 108 VAL A 111 1 O ILE A 110 N TYR A 16 SHEET 6 AA1 7 ILE A 138 VAL A 141 1 O VAL A 139 N PHE A 109 SHEET 7 AA1 7 VAL A 172 VAL A 174 1 O VAL A 172 N MET A 140 SHEET 1 AA2 7 GLU B 88 THR B 92 0 SHEET 2 AA2 7 THR B 68 PRO B 73 1 N GLY B 70 O ILE B 90 SHEET 3 AA2 7 THR B 43 TRP B 46 1 N LEU B 44 O VAL B 69 SHEET 4 AA2 7 THR B 12 TYR B 16 1 N VAL B 13 O THR B 43 SHEET 5 AA2 7 ALA B 108 VAL B 111 1 O ILE B 110 N ALA B 14 SHEET 6 AA2 7 ILE B 138 VAL B 141 1 O VAL B 139 N PHE B 109 SHEET 7 AA2 7 VAL B 172 VAL B 174 1 O VAL B 172 N MET B 140 SHEET 1 AA3 7 GLU C 88 THR C 92 0 SHEET 2 AA3 7 THR C 68 PRO C 73 1 N GLY C 70 O ILE C 90 SHEET 3 AA3 7 THR C 43 TRP C 46 1 N LEU C 44 O VAL C 69 SHEET 4 AA3 7 THR C 12 TYR C 16 1 N VAL C 13 O THR C 43 SHEET 5 AA3 7 ALA C 108 VAL C 111 1 O ILE C 110 N ALA C 14 SHEET 6 AA3 7 ILE C 138 VAL C 141 1 O VAL C 139 N PHE C 109 SHEET 7 AA3 7 LEU C 171 VAL C 174 1 O VAL C 172 N MET C 140 SHEET 1 AA4 7 GLU D 88 THR D 92 0 SHEET 2 AA4 7 THR D 68 PRO D 73 1 N GLY D 70 O ILE D 90 SHEET 3 AA4 7 THR D 43 TRP D 46 1 N LEU D 44 O VAL D 69 SHEET 4 AA4 7 THR D 12 TYR D 16 1 N VAL D 13 O THR D 43 SHEET 5 AA4 7 ALA D 108 VAL D 111 1 O ILE D 110 N TYR D 16 SHEET 6 AA4 7 ILE D 138 VAL D 141 1 O VAL D 139 N PHE D 109 SHEET 7 AA4 7 VAL D 172 VAL D 174 1 O VAL D 174 N MET D 140 LINK OD1 ASP A 124 MG MG A 201 1555 1555 2.27 LINK OD2 ASP A 128 MG MG A 201 1555 1555 2.25 LINK MG MG A 201 O1 EDO A 204 1555 1555 2.86 LINK MG MG A 201 O HOH A 401 1555 1555 2.84 LINK OE1 GLN B 100 MG MG B 201 1555 1555 2.27 LINK OE1 GLU B 103 MG MG B 201 1555 1555 2.09 LINK OD2 ASP B 128 MG MG B 201 1555 1555 2.69 LINK MG MG B 201 O HOH B 318 1555 1555 2.42 LINK MG MG B 201 O HOH B 360 1555 1555 2.40 LINK MG MG B 201 O HOH B 379 1555 1555 2.37 LINK O ASP C 124 MG MG C 201 1555 1555 2.17 LINK OD1 ASP C 124 MG MG C 201 1555 1555 1.94 LINK OD2 ASP C 128 MG MG C 201 1555 1555 2.08 LINK MG MG C 201 O HOH C 319 1555 1555 2.13 LINK MG MG C 201 O HOH C 367 1555 1555 2.21 LINK MG MG C 201 O HOH D 322 1555 1455 1.99 LINK O HOH C 344 MG MG D 201 1655 1555 2.18 LINK O ASP D 124 MG MG D 201 1555 1555 2.22 LINK OD1 ASP D 124 MG MG D 201 1555 1555 2.08 LINK OD2 ASP D 128 MG MG D 201 1555 1555 2.11 LINK MG MG D 201 O HOH D 330 1555 1555 2.22 LINK MG MG D 201 O HOH D 366 1555 1555 2.37 CRYST1 67.958 75.976 134.953 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014715 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007410 0.00000