HEADER HYDROLASE 24-NOV-21 7W2W TITLE CRYSTAL STRUCTURE OF TXGH116 R786K MUTANT FROM THERMOANAEROBACTERIUM TITLE 2 XYLANOLYTICUM WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYLCERAMIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.45; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTERIUM XYLANOLYTICUM (STRAIN SOURCE 3 ATCC 49914 / DSM 7097 / LX-11); SOURCE 4 ORGANISM_TAXID: 858215; SOURCE 5 STRAIN: ATCC 49914 / DSM 7097 / LX-11; SOURCE 6 GENE: THEXY_2211; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS TXGH116, BETA-GLUCOSIDASE, MUTANT, THERMOANAEROBACTERIUM KEYWDS 2 XYLANOLYTICUM, GLUCOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.HUANG,S.PENGTHAISONG,R.CHAROENWATTANASATIEN,J.JITONNOM,J.R.KETUDAT AUTHOR 2 CAIRNS REVDAT 2 29-NOV-23 7W2W 1 REMARK REVDAT 1 06-APR-22 7W2W 0 JRNL AUTH M.HUANG,S.PENGTHAISONG,R.CHAROENWATTANASATIEN,N.THINKUMROB, JRNL AUTH 2 J.JITONNOM,J.R.KETUDAT CAIRNS JRNL TITL SYSTEMATIC FUNCTIONAL AND COMPUTATIONAL ANALYSIS OF JRNL TITL 2 GLUCOSE-BINDING RESIDUES IN GLYCOSIDE HYDROLASE FAMILY JRNL TITL 3 GH116. JRNL REF CATALYSTS V. 12 2022 JRNL REFN ESSN 2073-4344 JRNL DOI 10.3390/CATAL12030343 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 70343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3615 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3438 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6223 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 463 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.379 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6576 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6000 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8897 ; 1.527 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13865 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 782 ; 6.604 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 311 ;36.900 ;25.338 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1090 ;13.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.241 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 909 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7427 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7W2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-21. REMARK 100 THE DEPOSITION ID IS D_1300025149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5BVU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 22% PEG 3000, REMARK 280 0.1 M MES, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 88.64250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.23150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.64250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.23150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 GLY A -18 REMARK 465 LEU A -17 REMARK 465 VAL A -16 REMARK 465 PRO A -15 REMARK 465 ARG A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 MET A -10 REMARK 465 LYS A -9 REMARK 465 GLU A -8 REMARK 465 THR A -7 REMARK 465 ALA A -6 REMARK 465 ALA A -5 REMARK 465 ALA A -4 REMARK 465 LYS A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 ARG A 0 REMARK 465 GLN A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 THR A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 ASP A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 MET A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 THR A 20 REMARK 465 GLY A 21 REMARK 465 CYS A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 LYS A 25 REMARK 465 ILE A 26 REMARK 465 ASN A 27 REMARK 465 ILE A 28 REMARK 465 ASN A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 429 REMARK 465 ASP A 430 REMARK 465 ASN A 804 REMARK 465 GLU A 805 REMARK 465 VAL A 806 REMARK 465 LEU A 807 REMARK 465 GLU A 808 REMARK 465 HIS A 809 REMARK 465 HIS A 810 REMARK 465 HIS A 811 REMARK 465 HIS A 812 REMARK 465 HIS A 813 REMARK 465 HIS A 814 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 HIS A 35 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLU A 134 CD OE1 OE2 REMARK 470 LYS A 166 CD CE NZ REMARK 470 LYS A 205 CE NZ REMARK 470 LYS A 325 CE NZ REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 LYS A 576 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 441 O1 GLC A 901 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 792 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 60 165.06 5.60 REMARK 500 SER A 68 171.03 78.73 REMARK 500 ASN A 135 -159.96 -91.48 REMARK 500 LYS A 186 -77.97 -107.33 REMARK 500 LYS A 242 124.55 -34.20 REMARK 500 THR A 286 50.88 -97.04 REMARK 500 ASN A 299 14.71 -143.87 REMARK 500 ASP A 307 103.06 -166.51 REMARK 500 LYS A 312 -71.29 -113.46 REMARK 500 CYS A 442 -175.93 -178.11 REMARK 500 ALA A 514 -117.02 -127.90 REMARK 500 TRP A 517 -17.22 76.49 REMARK 500 ASP A 589 51.55 -108.80 REMARK 500 HIS A 660 54.95 -113.42 REMARK 500 PHE A 699 -74.53 -102.72 REMARK 500 VAL A 701 -66.65 -94.41 REMARK 500 ARG A 774 41.60 -157.13 REMARK 500 ALA A 787 76.24 59.82 REMARK 500 ALA A 787 76.24 64.28 REMARK 500 MET A 789 66.55 61.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 916 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 575 OD1 REMARK 620 2 ASP A 577 OD1 78.3 REMARK 620 3 ASP A 579 OD1 83.9 88.1 REMARK 620 4 ILE A 581 O 79.3 157.5 86.5 REMARK 620 5 ASP A 583 OD1 92.4 87.3 174.6 96.7 REMARK 620 6 HOH A1062 O 158.6 123.0 97.2 79.4 87.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5BVU RELATED DB: PDB REMARK 900 FREE TXGH116 REMARK 900 RELATED ID: 5BX2 RELATED DB: PDB REMARK 900 TXGH116 WITH G2F REMARK 900 RELATED ID: 5BX3 RELATED DB: PDB REMARK 900 TXGH116 WITH DEOXYNOJIRIMYCIN REMARK 900 RELATED ID: 5BX4 RELATED DB: PDB REMARK 900 TXGH116 WITH GLUCOIMIDAZOLE REMARK 900 RELATED ID: 5BX5 RELATED DB: PDB REMARK 900 TXGH116 WITH GLUCOSE REMARK 900 RELATED ID: 7DKS RELATED DB: PDB REMARK 900 TXGH116 E441A REMARK 900 RELATED ID: 7DKT RELATED DB: PDB REMARK 900 TXGH116 E441A WITH ALPHA-GLUCOSYLFLUORIDE REMARK 900 RELATED ID: 7DKU RELATED DB: PDB REMARK 900 TXGH116 E441A WITH CELLOBIOSE REMARK 900 RELATED ID: 7DKV RELATED DB: PDB REMARK 900 TXGH116 E441A WITH CELLOTRIOSE REMARK 900 RELATED ID: 7DKW RELATED DB: PDB REMARK 900 TXGH116 E441G WITH ALPHA-GLUCOSYLFLUORIDE REMARK 900 RELATED ID: 7DKX RELATED DB: PDB REMARK 900 TXGH116 E441G WITH CELLOBIOSE REMARK 900 RELATED ID: 7DKY RELATED DB: PDB REMARK 900 TXGH116 E441G WITH CELLOTRIOSE DBREF 7W2W A 19 806 UNP F6BL85 F6BL85_THEXL 19 806 SEQADV 7W2W MET A -27 UNP F6BL85 INITIATING METHIONINE SEQADV 7W2W HIS A -26 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A -25 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A -24 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A -23 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A -22 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A -21 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W SER A -20 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W SER A -19 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLY A -18 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W LEU A -17 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W VAL A -16 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W PRO A -15 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ARG A -14 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLY A -13 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W SER A -12 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLY A -11 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W MET A -10 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W LYS A -9 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLU A -8 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W THR A -7 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ALA A -6 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ALA A -5 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ALA A -4 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W LYS A -3 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W PHE A -2 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLU A -1 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ARG A 0 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLN A 1 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A 2 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W MET A 3 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ASP A 4 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W SER A 5 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W PRO A 6 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ASP A 7 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W LEU A 8 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLY A 9 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W THR A 10 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ASP A 11 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ASP A 12 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ASP A 13 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ASP A 14 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W LYS A 15 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ALA A 16 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W MET A 17 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W ALA A 18 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W LYS A 786 UNP F6BL85 ARG 786 ENGINEERED MUTATION SEQADV 7W2W LEU A 807 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W GLU A 808 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A 809 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A 810 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A 811 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A 812 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A 813 UNP F6BL85 EXPRESSION TAG SEQADV 7W2W HIS A 814 UNP F6BL85 EXPRESSION TAG SEQRES 1 A 842 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 842 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 842 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP SEQRES 4 A 842 ASP ASP ASP LYS ALA MET ALA LEU THR GLY CYS SER GLU SEQRES 5 A 842 LYS ILE ASN ILE ASN GLU ASP LYS ILE SER HIS LYS ILE SEQRES 6 A 842 ASP ILE PRO ASP SER ALA TRP THR ILE GLY ILE GLY GLU SEQRES 7 A 842 LYS PHE LYS ASN ALA GLY HIS PRO ASN VAL LYS TYR PRO SEQRES 8 A 842 MET ILE ASP ASP SER TYR VAL GLN GLY ALA PRO LEU GLY SEQRES 9 A 842 GLY PHE GLY ALA GLY THR ILE GLY ARG THR TYR ASN GLY SEQRES 10 A 842 GLY PHE SER ARG TRP HIS LEU GLU ILE GLY LYS ASN LYS SEQRES 11 A 842 TYR THR THR VAL TYR ALA ASN GLN PHE SER VAL PHE GLN SEQRES 12 A 842 LYS VAL GLU GLY ASN LYS ASP GLY VAL ALA GLN VAL LEU SEQRES 13 A 842 TYR ALA GLY GLU PRO GLU ASN GLY TYR LEU SER SER TRP SEQRES 14 A 842 LYS TRP ASP TYR PRO LYS GLU SER GLY MET TYR TYR ALA SEQRES 15 A 842 LEU TYR PRO ASN SER TRP TYR THR TYR THR ASN LYS ASP SEQRES 16 A 842 LEU PRO VAL GLN LEU ALA VAL LYS GLN PHE SER PRO ILE SEQRES 17 A 842 ILE PRO TYR ASN TYR LYS GLU THR SER TYR PRO VAL ALA SEQRES 18 A 842 VAL PHE LYS TRP THR ALA TYR ASN PRO THR ASN LYS ASN SEQRES 19 A 842 VAL ASP VAL SER ILE MET PHE THR TRP GLN ASN MET ILE SEQRES 20 A 842 GLY PHE PHE GLY LYS GLN VAL ASN VAL ASN SER GLY ASN SEQRES 21 A 842 PHE ASN LYS ILE ILE LYS ASP LYS SER LYS ASP SER GLU SEQRES 22 A 842 ILE VAL ALA ALA VAL MET GLY ASN ILE SER ASN ASP ASN SEQRES 23 A 842 GLU GLU TRP ASN GLY GLU TYR SER ILE GLY VAL LYS LYS SEQRES 24 A 842 VAL PRO GLY VAL ASP ILE SER TYR LYS ALA LYS PHE VAL SEQRES 25 A 842 THR THR GLY ASP GLY SER ASP LEU TRP HIS GLU PHE SER SEQRES 26 A 842 LYS ASN GLY ILE LEU ASP ASN LYS ASP ASP GLU THR PRO SEQRES 27 A 842 THR LYS GLN ASP GLY ILE GLY SER ALA ILE ALA VAL ASN SEQRES 28 A 842 PHE LYS LEU GLN PRO GLY GLN THR ILE GLU VAL PRO PHE SEQRES 29 A 842 ALA LEU SER TRP ASP LEU PRO ILE MET LYS PHE GLY GLY SEQRES 30 A 842 GLY ASP LYS TRP TYR LYS MET TYR THR LYS TYR PHE GLY SEQRES 31 A 842 LYS ASN GLY LYS ASN SER PHE ALA ILE LEU LYS GLU ALA SEQRES 32 A 842 LEU ASN ASN TYR GLN LYS TRP GLU LYS MET ILE ASP ASP SEQRES 33 A 842 TRP GLN LYS PRO ILE LEU SER ASN LYS SER LYS PRO ASP SEQRES 34 A 842 TRP TYR LYS THR ALA LEU PHE ASN GLU LEU TYR TYR LEU SEQRES 35 A 842 ALA ASP GLY GLY THR ALA TRP GLU ASN GLY LYS VAL GLY SEQRES 36 A 842 GLU LYS ASP LYS ARG THR ASN ASN MET PHE GLY LEU LEU SEQRES 37 A 842 GLU CYS PHE ASP TYR ASN TYR TYR GLU THR LEU ASP VAL SEQRES 38 A 842 ARG PHE TYR GLY SER PHE PRO LEU VAL MET LEU TRP PRO SEQRES 39 A 842 ASP ILE GLU LYS GLN VAL MET ARG GLN PHE ALA ASP THR SEQRES 40 A 842 ILE ASN VAL GLN ASP SER SER GLU PHE LYS VAL GLY SER SEQRES 41 A 842 ASN GLY ALA MET ALA VAL LYS LYS VAL GLN GLY MET ILE SEQRES 42 A 842 PRO HIS ASP LEU GLY SER SER TYR ALA LEU PRO TRP ILE SEQRES 43 A 842 LYS ILE ASN ALA TYR ASP TRP GLN ASN PRO ASN ILE TRP SEQRES 44 A 842 LYS ASP LEU ASN SER LYS TYR VAL LEU LEU VAL TYR ARG SEQRES 45 A 842 ASP TYR VAL LEU THR GLY LYS THR ASP LYS GLU PHE LEU SEQRES 46 A 842 LYS TYR THR TRP LYS SER VAL LYS THR ALA LEU ASP LYS SEQRES 47 A 842 LEU LYS GLU MET ASP LYS ASP ASN ASP GLY ILE PRO ASP SEQRES 48 A 842 ASN GLU GLY ILE PRO ASP GLN THR TYR ASP THR TRP SER SEQRES 49 A 842 MET LYS GLY THR SER ALA TYR CYS GLY SER LEU TRP LEU SEQRES 50 A 842 ALA ALA LEU LYS ALA ALA GLN GLU ILE GLY LYS VAL LEU SEQRES 51 A 842 LYS ASP ASN GLU ALA TYR ILE LYS TYR ASN GLU TRP TYR SEQRES 52 A 842 LYS ILE ALA GLN GLN ASN PHE GLU LYS GLU LEU TRP ASN SEQRES 53 A 842 GLY GLU TYR TYR ASN PHE ASP THR GLU SER ASP HIS LYS SEQRES 54 A 842 ASP SER ILE MET ALA ASP GLN LEU ALA GLY GLN TRP TYR SEQRES 55 A 842 ALA ASP ILE LEU ARG LEU GLY ASP ILE LEU PRO LYS ASP SEQRES 56 A 842 HIS VAL GLN LYS ALA LEU LYS LYS ILE TYR GLU PHE ASN SEQRES 57 A 842 VAL MET LYS PHE GLU ASN GLY LYS MET GLY ALA VAL ASN SEQRES 58 A 842 GLY MET ARG PRO ASP GLY ILE VAL ASP GLU SER ASP ILE SEQRES 59 A 842 GLN ALA GLN GLU VAL TRP THR GLY VAL THR TYR ALA LEU SEQRES 60 A 842 ALA SER PHE MET LYS TYR ARG GLY MET THR GLU GLU ALA SEQRES 61 A 842 TYR ASN THR ALA TYR GLY VAL TYR LYS MET THR TYR ASP SEQRES 62 A 842 LYS SER GLY LYS GLY TYR TRP PHE ARG THR PRO GLU ALA SEQRES 63 A 842 TRP THR LYS ASP GLY ASN TYR LYS ALA SER MET TYR MET SEQRES 64 A 842 ARG PRO LEU SER ILE TRP SER MET GLU VAL ASN TYR ASN SEQRES 65 A 842 GLU VAL LEU GLU HIS HIS HIS HIS HIS HIS HET GLC A 901 12 HET BGC A 902 12 HET GOL A 903 6 HET GOL A 904 6 HET GOL A 905 6 HET GOL A 906 6 HET GOL A 907 6 HET GOL A 908 6 HET GOL A 909 6 HET GOL A 910 6 HET GOL A 911 6 HET GOL A 912 6 HET GOL A 913 6 HET SO4 A 914 5 HET EDO A 915 4 HET CA A 916 1 HET GOL A 917 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GLC C6 H12 O6 FORMUL 3 BGC C6 H12 O6 FORMUL 4 GOL 12(C3 H8 O3) FORMUL 15 SO4 O4 S 2- FORMUL 16 EDO C2 H6 O2 FORMUL 17 CA CA 2+ FORMUL 19 HOH *463(H2 O) HELIX 1 AA1 ILE A 33 ILE A 37 5 5 HELIX 2 AA2 LYS A 186 TYR A 190 5 5 HELIX 3 AA3 GLY A 289 GLY A 300 1 12 HELIX 4 AA4 TYR A 357 GLY A 362 1 6 HELIX 5 AA5 ASN A 367 SER A 395 1 29 HELIX 6 AA6 PRO A 400 LEU A 411 1 12 HELIX 7 AA7 LEU A 411 GLY A 417 1 7 HELIX 8 AA8 THR A 450 SER A 458 1 9 HELIX 9 AA9 SER A 458 TRP A 465 1 8 HELIX 10 AB1 TRP A 465 ILE A 480 1 16 HELIX 11 AB2 ASN A 527 TRP A 531 5 5 HELIX 12 AB3 ASP A 533 LEU A 548 1 16 HELIX 13 AB4 ASP A 553 GLU A 573 1 21 HELIX 14 AB5 SER A 601 LYS A 623 1 23 HELIX 15 AB6 ASP A 624 TRP A 647 1 24 HELIX 16 AB7 LEU A 669 LEU A 678 1 10 HELIX 17 AB8 PRO A 685 PHE A 699 1 15 HELIX 18 AB9 PHE A 704 LYS A 708 5 5 HELIX 19 AC1 ASP A 725 GLU A 730 5 6 HELIX 20 AC2 THR A 733 ARG A 746 1 14 HELIX 21 AC3 MET A 748 ASP A 765 1 18 HELIX 22 AC4 MET A 791 GLU A 800 5 10 SHEET 1 AA1 9 TRP A 44 GLY A 47 0 SHEET 2 AA1 9 GLY A 150 LEU A 155 -1 O TYR A 152 N ILE A 46 SHEET 3 AA1 9 ASN A 158 TYR A 163 -1 O TRP A 160 N TYR A 153 SHEET 4 AA1 9 GLN A 171 PHE A 177 -1 O GLN A 176 N SER A 159 SHEET 5 AA1 9 VAL A 192 TYR A 200 -1 O LYS A 196 N LYS A 175 SHEET 6 AA1 9 THR A 331 ASP A 341 -1 O PHE A 336 N PHE A 195 SHEET 7 AA1 9 GLU A 264 LYS A 270 -1 N GLU A 264 O ASP A 341 SHEET 8 AA1 9 SER A 244 ASN A 253 -1 N MET A 251 O TYR A 265 SHEET 9 AA1 9 ASN A 232 SER A 241 -1 N ASP A 239 O ILE A 246 SHEET 1 AA2 4 PRO A 74 LEU A 75 0 SHEET 2 AA2 4 THR A 82 ARG A 85 -1 O ILE A 83 N LEU A 75 SHEET 3 AA2 4 PHE A 91 HIS A 95 -1 O ARG A 93 N GLY A 84 SHEET 4 AA2 4 LYS A 102 TYR A 103 -1 O LYS A 102 N TRP A 94 SHEET 1 AA3 5 VAL A 124 VAL A 127 0 SHEET 2 AA3 5 GLN A 110 VAL A 117 -1 N GLN A 115 O VAL A 124 SHEET 3 AA3 5 VAL A 207 GLN A 216 -1 O ASP A 208 N LYS A 116 SHEET 4 AA3 5 ILE A 316 LEU A 326 -1 O ILE A 320 N PHE A 213 SHEET 5 AA3 5 VAL A 275 VAL A 284 -1 N SER A 278 O ALA A 321 SHEET 1 AA4 4 ILE A 344 LYS A 346 0 SHEET 2 AA4 4 LYS A 352 LYS A 355 -1 O TRP A 353 N MET A 345 SHEET 3 AA4 4 ALA A 420 LYS A 425 -1 O GLY A 424 N TYR A 354 SHEET 4 AA4 4 PHE A 437 GLY A 438 -1 O GLY A 438 N ALA A 420 SHEET 1 AA5 2 ASP A 484 LYS A 489 0 SHEET 2 AA5 2 MET A 496 LYS A 500 -1 O LYS A 500 N ASP A 484 SHEET 1 AA6 2 ASN A 584 ILE A 587 0 SHEET 2 AA6 2 MET A 597 GLY A 599 -1 O GLY A 599 N ASN A 584 SHEET 1 AA7 2 ILE A 664 MET A 665 0 SHEET 2 AA7 2 GLY A 714 MET A 715 -1 O MET A 715 N ILE A 664 SHEET 1 AA8 3 VAL A 731 TRP A 732 0 SHEET 2 AA8 3 ALA A 778 TRP A 779 -1 O TRP A 779 N VAL A 731 SHEET 3 AA8 3 TYR A 785 LYS A 786 -1 O LYS A 786 N ALA A 778 LINK OD1 ASP A 575 CA CA A 916 1555 1555 2.41 LINK OD1 ASP A 577 CA CA A 916 1555 1555 2.36 LINK OD1 ASP A 579 CA CA A 916 1555 1555 2.34 LINK O ILE A 581 CA CA A 916 1555 1555 2.37 LINK OD1 ASP A 583 CA CA A 916 1555 1555 2.32 LINK CA CA A 916 O HOH A1062 1555 1555 2.41 CISPEP 1 TYR A 156 PRO A 157 0 15.17 CRYST1 177.285 54.463 83.074 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012037 0.00000