data_7W3T # _entry.id 7W3T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7W3T pdb_00007w3t 10.2210/pdb7w3t/pdb WWPDB D_1300025809 ? ? EMDB EMD-32293 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of plant receptor like protein RXEG1 in complex with xyloglucanase XEG1 and BAK1' _pdbx_database_related.db_id EMD-32293 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7W3T _pdbx_database_status.recvd_initial_deposition_date 2021-11-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sun, Y.' 1 ? 'Wang, Y.' 2 ? 'Zhang, X.X.' 3 ? 'Chen, Z.D.' 4 ? 'Xia, Y.Q.' 5 ? 'Sun, Y.J.' 6 ? 'Zhang, M.M.' 7 ? 'Xiao, Y.' 8 ? 'Han, Z.F.' 9 ? 'Wang, Y.C.' 10 ? 'Chai, J.J.' 11 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 610 _citation.language ? _citation.page_first 335 _citation.page_last 342 _citation.title 'Plant receptor-like protein activation by a microbial glycoside hydrolase.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-022-05214-x _citation.pdbx_database_id_PubMed 36131021 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, Y.' 1 0000-0001-6116-7435 primary 'Wang, Y.' 2 0000-0001-7465-5518 primary 'Zhang, X.' 3 0000-0003-3762-2287 primary 'Chen, Z.' 4 ? primary 'Xia, Y.' 5 ? primary 'Wang, L.' 6 ? primary 'Sun, Y.' 7 ? primary 'Zhang, M.' 8 ? primary 'Xiao, Y.' 9 ? primary 'Han, Z.' 10 0000-0002-2608-9088 primary 'Wang, Y.' 11 0000-0001-5803-5343 primary 'Chai, J.' 12 0000-0001-7591-3873 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7W3T _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7W3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Brassinosteroid insensitive 1-associated receptor kinase 1' 24514.012 1 ? ? ? ? 2 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name BAK1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDQWILGILGFVSTFLCLIGLLLVPVSANIEGDALNALKTNLADPNNVLQSWDPTLVNPCTWFHVTCNSENSVTRVDLGN ANLSGQLVPQLGQLPNLQYLELYSNNISGRIPFELGNLTNLVSLDLYLNRLNGPIPDTLGKLQKLRFLRLNNNSLNGRIP MLLTTVISLQVLDLSNNNLTGPVPVNGSFSLFTPISFANNPLDIPPAAPPPPISPMPPSSSGVGNSAT ; _entity_poly.pdbx_seq_one_letter_code_can ;MDQWILGILGFVSTFLCLIGLLLVPVSANIEGDALNALKTNLADPNNVLQSWDPTLVNPCTWFHVTCNSENSVTRVDLGN ANLSGQLVPQLGQLPNLQYLELYSNNISGRIPFELGNLTNLVSLDLYLNRLNGPIPDTLGKLQKLRFLRLNNNSLNGRIP MLLTTVISLQVLDLSNNNLTGPVPVNGSFSLFTPISFANNPLDIPPAAPPPPISPMPPSSSGVGNSAT ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 GLN n 1 4 TRP n 1 5 ILE n 1 6 LEU n 1 7 GLY n 1 8 ILE n 1 9 LEU n 1 10 GLY n 1 11 PHE n 1 12 VAL n 1 13 SER n 1 14 THR n 1 15 PHE n 1 16 LEU n 1 17 CYS n 1 18 LEU n 1 19 ILE n 1 20 GLY n 1 21 LEU n 1 22 LEU n 1 23 LEU n 1 24 VAL n 1 25 PRO n 1 26 VAL n 1 27 SER n 1 28 ALA n 1 29 ASN n 1 30 ILE n 1 31 GLU n 1 32 GLY n 1 33 ASP n 1 34 ALA n 1 35 LEU n 1 36 ASN n 1 37 ALA n 1 38 LEU n 1 39 LYS n 1 40 THR n 1 41 ASN n 1 42 LEU n 1 43 ALA n 1 44 ASP n 1 45 PRO n 1 46 ASN n 1 47 ASN n 1 48 VAL n 1 49 LEU n 1 50 GLN n 1 51 SER n 1 52 TRP n 1 53 ASP n 1 54 PRO n 1 55 THR n 1 56 LEU n 1 57 VAL n 1 58 ASN n 1 59 PRO n 1 60 CYS n 1 61 THR n 1 62 TRP n 1 63 PHE n 1 64 HIS n 1 65 VAL n 1 66 THR n 1 67 CYS n 1 68 ASN n 1 69 SER n 1 70 GLU n 1 71 ASN n 1 72 SER n 1 73 VAL n 1 74 THR n 1 75 ARG n 1 76 VAL n 1 77 ASP n 1 78 LEU n 1 79 GLY n 1 80 ASN n 1 81 ALA n 1 82 ASN n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 GLN n 1 87 LEU n 1 88 VAL n 1 89 PRO n 1 90 GLN n 1 91 LEU n 1 92 GLY n 1 93 GLN n 1 94 LEU n 1 95 PRO n 1 96 ASN n 1 97 LEU n 1 98 GLN n 1 99 TYR n 1 100 LEU n 1 101 GLU n 1 102 LEU n 1 103 TYR n 1 104 SER n 1 105 ASN n 1 106 ASN n 1 107 ILE n 1 108 SER n 1 109 GLY n 1 110 ARG n 1 111 ILE n 1 112 PRO n 1 113 PHE n 1 114 GLU n 1 115 LEU n 1 116 GLY n 1 117 ASN n 1 118 LEU n 1 119 THR n 1 120 ASN n 1 121 LEU n 1 122 VAL n 1 123 SER n 1 124 LEU n 1 125 ASP n 1 126 LEU n 1 127 TYR n 1 128 LEU n 1 129 ASN n 1 130 ARG n 1 131 LEU n 1 132 ASN n 1 133 GLY n 1 134 PRO n 1 135 ILE n 1 136 PRO n 1 137 ASP n 1 138 THR n 1 139 LEU n 1 140 GLY n 1 141 LYS n 1 142 LEU n 1 143 GLN n 1 144 LYS n 1 145 LEU n 1 146 ARG n 1 147 PHE n 1 148 LEU n 1 149 ARG n 1 150 LEU n 1 151 ASN n 1 152 ASN n 1 153 ASN n 1 154 SER n 1 155 LEU n 1 156 ASN n 1 157 GLY n 1 158 ARG n 1 159 ILE n 1 160 PRO n 1 161 MET n 1 162 LEU n 1 163 LEU n 1 164 THR n 1 165 THR n 1 166 VAL n 1 167 ILE n 1 168 SER n 1 169 LEU n 1 170 GLN n 1 171 VAL n 1 172 LEU n 1 173 ASP n 1 174 LEU n 1 175 SER n 1 176 ASN n 1 177 ASN n 1 178 ASN n 1 179 LEU n 1 180 THR n 1 181 GLY n 1 182 PRO n 1 183 VAL n 1 184 PRO n 1 185 VAL n 1 186 ASN n 1 187 GLY n 1 188 SER n 1 189 PHE n 1 190 SER n 1 191 LEU n 1 192 PHE n 1 193 THR n 1 194 PRO n 1 195 ILE n 1 196 SER n 1 197 PHE n 1 198 ALA n 1 199 ASN n 1 200 ASN n 1 201 PRO n 1 202 LEU n 1 203 ASP n 1 204 ILE n 1 205 PRO n 1 206 PRO n 1 207 ALA n 1 208 ALA n 1 209 PRO n 1 210 PRO n 1 211 PRO n 1 212 PRO n 1 213 ILE n 1 214 SER n 1 215 PRO n 1 216 MET n 1 217 PRO n 1 218 PRO n 1 219 SER n 1 220 SER n 1 221 SER n 1 222 GLY n 1 223 VAL n 1 224 GLY n 1 225 ASN n 1 226 SER n 1 227 ALA n 1 228 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 228 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nicotiana benthamiana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4100 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7W3T _struct_ref.pdbx_db_accession 7W3T _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7W3T _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 228 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7W3T _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 228 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 228 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7W3T _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7W3T _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 1481 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.576 ? 2029 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.276 ? 230 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 264 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 258 ? f_plane_restr ? ? # _struct.entry_id 7W3T _struct.title 'Cryo-EM structure of plant receptor like kinase NbBAK1 in RXEG1-BAK1-XEG1 complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7W3T _struct_keywords.text 'LRR, PTI, Glycoside hydrolase, Inhibitor, PLANT PROTEIN' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 29 ? ASN A 41 ? ASN B 29 ASN B 41 1 ? 13 HELX_P HELX_P2 AA2 GLN A 90 ? LEU A 94 ? GLN B 90 LEU B 94 5 ? 5 HELX_P HELX_P3 AA3 PRO A 112 ? LEU A 118 ? PRO B 112 LEU B 118 5 ? 7 HELX_P HELX_P4 AA4 PRO A 136 ? LEU A 142 ? PRO B 136 LEU B 142 5 ? 7 HELX_P HELX_P5 AA5 MET A 161 ? VAL A 166 ? MET B 161 VAL B 166 5 ? 6 HELX_P HELX_P6 AA6 ASN A 186 ? LEU A 191 ? ASN B 186 LEU B 191 5 ? 6 HELX_P HELX_P7 AA7 THR A 193 ? PHE A 197 ? THR B 193 PHE B 197 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 60 SG ? ? ? 1_555 A CYS 67 SG ? ? B CYS 60 B CYS 67 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 82 ND2 ? ? ? 1_555 C NAG . C1 ? ? B ASN 82 B NAG 1000 1_555 ? ? ? ? ? ? ? 1.443 ? N-Glycosylation covale2 covale one ? A ASN 106 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 106 B NAG 1001 1_555 ? ? ? ? ? ? ? 1.446 ? N-Glycosylation covale3 covale one ? A ASN 117 ND2 ? ? ? 1_555 E NAG . C1 ? ? B ASN 117 B NAG 1002 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale4 covale one ? A ASN 152 ND2 ? ? ? 1_555 F NAG . C1 ? ? B ASN 152 B NAG 1003 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale5 covale one ? A ASN 186 ND2 ? ? ? 1_555 B NAG . C1 ? ? B ASN 186 A NAG 1 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale6 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale7 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? A NAG 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.441 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 6 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA3 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 42 ? ALA A 43 ? LEU B 42 ALA B 43 AA1 2 SER A 84 ? GLY A 85 ? SER B 84 GLY B 85 AA1 3 ASN A 106 ? GLY A 109 ? ASN B 106 GLY B 109 AA1 4 ARG A 130 ? LEU A 131 ? ARG B 130 LEU B 131 AA2 1 VAL A 65 ? THR A 66 ? VAL B 65 THR B 66 AA2 2 ARG A 75 ? LEU A 78 ? ARG B 75 LEU B 78 AA2 3 LEU A 100 ? LEU A 102 ? LEU B 100 LEU B 102 AA2 4 SER A 123 ? ASP A 125 ? SER B 123 ASP B 125 AA2 5 PHE A 147 ? ASN A 151 ? PHE B 147 ASN B 151 AA2 6 VAL A 171 ? SER A 175 ? VAL B 171 SER B 175 AA3 1 GLY A 157 ? ARG A 158 ? GLY B 157 ARG B 158 AA3 2 LEU A 179 ? THR A 180 ? LEU B 179 THR B 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 43 ? N ALA B 43 O SER A 84 ? O SER B 84 AA1 2 3 N GLY A 85 ? N GLY B 85 O SER A 108 ? O SER B 108 AA1 3 4 N ILE A 107 ? N ILE B 107 O ARG A 130 ? O ARG B 130 AA2 1 2 N THR A 66 ? N THR B 66 O ARG A 75 ? O ARG B 75 AA2 2 3 N VAL A 76 ? N VAL B 76 O GLU A 101 ? O GLU B 101 AA2 3 4 N LEU A 100 ? N LEU B 100 O ASP A 125 ? O ASP B 125 AA2 4 5 N LEU A 124 ? N LEU B 124 O ARG A 149 ? O ARG B 149 AA2 5 6 N LEU A 150 ? N LEU B 150 O ASP A 173 ? O ASP B 173 AA3 1 2 N GLY A 157 ? N GLY B 157 O THR A 180 ? O THR B 180 # _atom_sites.entry_id 7W3T _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? B . n A 1 2 ASP 2 2 ? ? ? B . n A 1 3 GLN 3 3 ? ? ? B . n A 1 4 TRP 4 4 ? ? ? B . n A 1 5 ILE 5 5 ? ? ? B . n A 1 6 LEU 6 6 ? ? ? B . n A 1 7 GLY 7 7 ? ? ? B . n A 1 8 ILE 8 8 ? ? ? B . n A 1 9 LEU 9 9 ? ? ? B . n A 1 10 GLY 10 10 ? ? ? B . n A 1 11 PHE 11 11 ? ? ? B . n A 1 12 VAL 12 12 ? ? ? B . n A 1 13 SER 13 13 ? ? ? B . n A 1 14 THR 14 14 ? ? ? B . n A 1 15 PHE 15 15 ? ? ? B . n A 1 16 LEU 16 16 ? ? ? B . n A 1 17 CYS 17 17 ? ? ? B . n A 1 18 LEU 18 18 ? ? ? B . n A 1 19 ILE 19 19 ? ? ? B . n A 1 20 GLY 20 20 ? ? ? B . n A 1 21 LEU 21 21 ? ? ? B . n A 1 22 LEU 22 22 ? ? ? B . n A 1 23 LEU 23 23 ? ? ? B . n A 1 24 VAL 24 24 ? ? ? B . n A 1 25 PRO 25 25 ? ? ? B . n A 1 26 VAL 26 26 ? ? ? B . n A 1 27 SER 27 27 ? ? ? B . n A 1 28 ALA 28 28 ? ? ? B . n A 1 29 ASN 29 29 29 ASN ASN B . n A 1 30 ILE 30 30 30 ILE ILE B . n A 1 31 GLU 31 31 31 GLU GLU B . n A 1 32 GLY 32 32 32 GLY GLY B . n A 1 33 ASP 33 33 33 ASP ASP B . n A 1 34 ALA 34 34 34 ALA ALA B . n A 1 35 LEU 35 35 35 LEU LEU B . n A 1 36 ASN 36 36 36 ASN ASN B . n A 1 37 ALA 37 37 37 ALA ALA B . n A 1 38 LEU 38 38 38 LEU LEU B . n A 1 39 LYS 39 39 39 LYS LYS B . n A 1 40 THR 40 40 40 THR THR B . n A 1 41 ASN 41 41 41 ASN ASN B . n A 1 42 LEU 42 42 42 LEU LEU B . n A 1 43 ALA 43 43 43 ALA ALA B . n A 1 44 ASP 44 44 44 ASP ASP B . n A 1 45 PRO 45 45 45 PRO PRO B . n A 1 46 ASN 46 46 46 ASN ASN B . n A 1 47 ASN 47 47 47 ASN ASN B . n A 1 48 VAL 48 48 48 VAL VAL B . n A 1 49 LEU 49 49 49 LEU LEU B . n A 1 50 GLN 50 50 50 GLN GLN B . n A 1 51 SER 51 51 51 SER SER B . n A 1 52 TRP 52 52 52 TRP TRP B . n A 1 53 ASP 53 53 53 ASP ASP B . n A 1 54 PRO 54 54 54 PRO PRO B . n A 1 55 THR 55 55 55 THR THR B . n A 1 56 LEU 56 56 56 LEU LEU B . n A 1 57 VAL 57 57 57 VAL VAL B . n A 1 58 ASN 58 58 58 ASN ASN B . n A 1 59 PRO 59 59 59 PRO PRO B . n A 1 60 CYS 60 60 60 CYS CYS B . n A 1 61 THR 61 61 61 THR THR B . n A 1 62 TRP 62 62 62 TRP TRP B . n A 1 63 PHE 63 63 63 PHE PHE B . n A 1 64 HIS 64 64 64 HIS HIS B . n A 1 65 VAL 65 65 65 VAL VAL B . n A 1 66 THR 66 66 66 THR THR B . n A 1 67 CYS 67 67 67 CYS CYS B . n A 1 68 ASN 68 68 68 ASN ASN B . n A 1 69 SER 69 69 69 SER SER B . n A 1 70 GLU 70 70 70 GLU GLU B . n A 1 71 ASN 71 71 71 ASN ASN B . n A 1 72 SER 72 72 72 SER SER B . n A 1 73 VAL 73 73 73 VAL VAL B . n A 1 74 THR 74 74 74 THR THR B . n A 1 75 ARG 75 75 75 ARG ARG B . n A 1 76 VAL 76 76 76 VAL VAL B . n A 1 77 ASP 77 77 77 ASP ASP B . n A 1 78 LEU 78 78 78 LEU LEU B . n A 1 79 GLY 79 79 79 GLY GLY B . n A 1 80 ASN 80 80 80 ASN ASN B . n A 1 81 ALA 81 81 81 ALA ALA B . n A 1 82 ASN 82 82 82 ASN ASN B . n A 1 83 LEU 83 83 83 LEU LEU B . n A 1 84 SER 84 84 84 SER SER B . n A 1 85 GLY 85 85 85 GLY GLY B . n A 1 86 GLN 86 86 86 GLN GLN B . n A 1 87 LEU 87 87 87 LEU LEU B . n A 1 88 VAL 88 88 88 VAL VAL B . n A 1 89 PRO 89 89 89 PRO PRO B . n A 1 90 GLN 90 90 90 GLN GLN B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 GLY 92 92 92 GLY GLY B . n A 1 93 GLN 93 93 93 GLN GLN B . n A 1 94 LEU 94 94 94 LEU LEU B . n A 1 95 PRO 95 95 95 PRO PRO B . n A 1 96 ASN 96 96 96 ASN ASN B . n A 1 97 LEU 97 97 97 LEU LEU B . n A 1 98 GLN 98 98 98 GLN GLN B . n A 1 99 TYR 99 99 99 TYR TYR B . n A 1 100 LEU 100 100 100 LEU LEU B . n A 1 101 GLU 101 101 101 GLU GLU B . n A 1 102 LEU 102 102 102 LEU LEU B . n A 1 103 TYR 103 103 103 TYR TYR B . n A 1 104 SER 104 104 104 SER SER B . n A 1 105 ASN 105 105 105 ASN ASN B . n A 1 106 ASN 106 106 106 ASN ASN B . n A 1 107 ILE 107 107 107 ILE ILE B . n A 1 108 SER 108 108 108 SER SER B . n A 1 109 GLY 109 109 109 GLY GLY B . n A 1 110 ARG 110 110 110 ARG ARG B . n A 1 111 ILE 111 111 111 ILE ILE B . n A 1 112 PRO 112 112 112 PRO PRO B . n A 1 113 PHE 113 113 113 PHE PHE B . n A 1 114 GLU 114 114 114 GLU GLU B . n A 1 115 LEU 115 115 115 LEU LEU B . n A 1 116 GLY 116 116 116 GLY GLY B . n A 1 117 ASN 117 117 117 ASN ASN B . n A 1 118 LEU 118 118 118 LEU LEU B . n A 1 119 THR 119 119 119 THR THR B . n A 1 120 ASN 120 120 120 ASN ASN B . n A 1 121 LEU 121 121 121 LEU LEU B . n A 1 122 VAL 122 122 122 VAL VAL B . n A 1 123 SER 123 123 123 SER SER B . n A 1 124 LEU 124 124 124 LEU LEU B . n A 1 125 ASP 125 125 125 ASP ASP B . n A 1 126 LEU 126 126 126 LEU LEU B . n A 1 127 TYR 127 127 127 TYR TYR B . n A 1 128 LEU 128 128 128 LEU LEU B . n A 1 129 ASN 129 129 129 ASN ASN B . n A 1 130 ARG 130 130 130 ARG ARG B . n A 1 131 LEU 131 131 131 LEU LEU B . n A 1 132 ASN 132 132 132 ASN ASN B . n A 1 133 GLY 133 133 133 GLY GLY B . n A 1 134 PRO 134 134 134 PRO PRO B . n A 1 135 ILE 135 135 135 ILE ILE B . n A 1 136 PRO 136 136 136 PRO PRO B . n A 1 137 ASP 137 137 137 ASP ASP B . n A 1 138 THR 138 138 138 THR THR B . n A 1 139 LEU 139 139 139 LEU LEU B . n A 1 140 GLY 140 140 140 GLY GLY B . n A 1 141 LYS 141 141 141 LYS LYS B . n A 1 142 LEU 142 142 142 LEU LEU B . n A 1 143 GLN 143 143 143 GLN GLN B . n A 1 144 LYS 144 144 144 LYS LYS B . n A 1 145 LEU 145 145 145 LEU LEU B . n A 1 146 ARG 146 146 146 ARG ARG B . n A 1 147 PHE 147 147 147 PHE PHE B . n A 1 148 LEU 148 148 148 LEU LEU B . n A 1 149 ARG 149 149 149 ARG ARG B . n A 1 150 LEU 150 150 150 LEU LEU B . n A 1 151 ASN 151 151 151 ASN ASN B . n A 1 152 ASN 152 152 152 ASN ASN B . n A 1 153 ASN 153 153 153 ASN ASN B . n A 1 154 SER 154 154 154 SER SER B . n A 1 155 LEU 155 155 155 LEU LEU B . n A 1 156 ASN 156 156 156 ASN ASN B . n A 1 157 GLY 157 157 157 GLY GLY B . n A 1 158 ARG 158 158 158 ARG ARG B . n A 1 159 ILE 159 159 159 ILE ILE B . n A 1 160 PRO 160 160 160 PRO PRO B . n A 1 161 MET 161 161 161 MET MET B . n A 1 162 LEU 162 162 162 LEU LEU B . n A 1 163 LEU 163 163 163 LEU LEU B . n A 1 164 THR 164 164 164 THR THR B . n A 1 165 THR 165 165 165 THR THR B . n A 1 166 VAL 166 166 166 VAL VAL B . n A 1 167 ILE 167 167 167 ILE ILE B . n A 1 168 SER 168 168 168 SER SER B . n A 1 169 LEU 169 169 169 LEU LEU B . n A 1 170 GLN 170 170 170 GLN GLN B . n A 1 171 VAL 171 171 171 VAL VAL B . n A 1 172 LEU 172 172 172 LEU LEU B . n A 1 173 ASP 173 173 173 ASP ASP B . n A 1 174 LEU 174 174 174 LEU LEU B . n A 1 175 SER 175 175 175 SER SER B . n A 1 176 ASN 176 176 176 ASN ASN B . n A 1 177 ASN 177 177 177 ASN ASN B . n A 1 178 ASN 178 178 178 ASN ASN B . n A 1 179 LEU 179 179 179 LEU LEU B . n A 1 180 THR 180 180 180 THR THR B . n A 1 181 GLY 181 181 181 GLY GLY B . n A 1 182 PRO 182 182 182 PRO PRO B . n A 1 183 VAL 183 183 183 VAL VAL B . n A 1 184 PRO 184 184 184 PRO PRO B . n A 1 185 VAL 185 185 185 VAL VAL B . n A 1 186 ASN 186 186 186 ASN ASN B . n A 1 187 GLY 187 187 187 GLY GLY B . n A 1 188 SER 188 188 188 SER SER B . n A 1 189 PHE 189 189 189 PHE PHE B . n A 1 190 SER 190 190 190 SER SER B . n A 1 191 LEU 191 191 191 LEU LEU B . n A 1 192 PHE 192 192 192 PHE PHE B . n A 1 193 THR 193 193 193 THR THR B . n A 1 194 PRO 194 194 194 PRO PRO B . n A 1 195 ILE 195 195 195 ILE ILE B . n A 1 196 SER 196 196 196 SER SER B . n A 1 197 PHE 197 197 197 PHE PHE B . n A 1 198 ALA 198 198 198 ALA ALA B . n A 1 199 ASN 199 199 199 ASN ASN B . n A 1 200 ASN 200 200 200 ASN ASN B . n A 1 201 PRO 201 201 201 PRO PRO B . n A 1 202 LEU 202 202 202 LEU LEU B . n A 1 203 ASP 203 203 203 ASP ASP B . n A 1 204 ILE 204 204 204 ILE ILE B . n A 1 205 PRO 205 205 ? ? ? B . n A 1 206 PRO 206 206 ? ? ? B . n A 1 207 ALA 207 207 ? ? ? B . n A 1 208 ALA 208 208 ? ? ? B . n A 1 209 PRO 209 209 ? ? ? B . n A 1 210 PRO 210 210 ? ? ? B . n A 1 211 PRO 211 211 ? ? ? B . n A 1 212 PRO 212 212 ? ? ? B . n A 1 213 ILE 213 213 ? ? ? B . n A 1 214 SER 214 214 ? ? ? B . n A 1 215 PRO 215 215 ? ? ? B . n A 1 216 MET 216 216 ? ? ? B . n A 1 217 PRO 217 217 ? ? ? B . n A 1 218 PRO 218 218 ? ? ? B . n A 1 219 SER 219 219 ? ? ? B . n A 1 220 SER 220 220 ? ? ? B . n A 1 221 SER 221 221 ? ? ? B . n A 1 222 GLY 222 222 ? ? ? B . n A 1 223 VAL 223 223 ? ? ? B . n A 1 224 GLY 224 224 ? ? ? B . n A 1 225 ASN 225 225 ? ? ? B . n A 1 226 SER 226 226 ? ? ? B . n A 1 227 ALA 227 227 ? ? ? B . n A 1 228 THR 228 228 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email chai@tsinghua.edu.cn _pdbx_contact_author.name_first Jijie _pdbx_contact_author.name_last Chai _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7591-3873 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 1000 1000 NAG NAG B . D 3 NAG 1 1001 1001 NAG NAG B . E 3 NAG 1 1002 1002 NAG NAG B . F 3 NAG 1 1003 1003 NAG NAG B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-22 2 'Structure model' 1 1 2022-10-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19.2_4158: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7W3T _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.entry_id 7W3T _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7W3T _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 36117 _em_3d_reconstruction.resolution 3.59 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name BAK1 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7W3T _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 2000 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7W3T _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7W3T _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 1 ? A MET 1 2 1 Y 1 B ASP 2 ? A ASP 2 3 1 Y 1 B GLN 3 ? A GLN 3 4 1 Y 1 B TRP 4 ? A TRP 4 5 1 Y 1 B ILE 5 ? A ILE 5 6 1 Y 1 B LEU 6 ? A LEU 6 7 1 Y 1 B GLY 7 ? A GLY 7 8 1 Y 1 B ILE 8 ? A ILE 8 9 1 Y 1 B LEU 9 ? A LEU 9 10 1 Y 1 B GLY 10 ? A GLY 10 11 1 Y 1 B PHE 11 ? A PHE 11 12 1 Y 1 B VAL 12 ? A VAL 12 13 1 Y 1 B SER 13 ? A SER 13 14 1 Y 1 B THR 14 ? A THR 14 15 1 Y 1 B PHE 15 ? A PHE 15 16 1 Y 1 B LEU 16 ? A LEU 16 17 1 Y 1 B CYS 17 ? A CYS 17 18 1 Y 1 B LEU 18 ? A LEU 18 19 1 Y 1 B ILE 19 ? A ILE 19 20 1 Y 1 B GLY 20 ? A GLY 20 21 1 Y 1 B LEU 21 ? A LEU 21 22 1 Y 1 B LEU 22 ? A LEU 22 23 1 Y 1 B LEU 23 ? A LEU 23 24 1 Y 1 B VAL 24 ? A VAL 24 25 1 Y 1 B PRO 25 ? A PRO 25 26 1 Y 1 B VAL 26 ? A VAL 26 27 1 Y 1 B SER 27 ? A SER 27 28 1 Y 1 B ALA 28 ? A ALA 28 29 1 Y 1 B PRO 205 ? A PRO 205 30 1 Y 1 B PRO 206 ? A PRO 206 31 1 Y 1 B ALA 207 ? A ALA 207 32 1 Y 1 B ALA 208 ? A ALA 208 33 1 Y 1 B PRO 209 ? A PRO 209 34 1 Y 1 B PRO 210 ? A PRO 210 35 1 Y 1 B PRO 211 ? A PRO 211 36 1 Y 1 B PRO 212 ? A PRO 212 37 1 Y 1 B ILE 213 ? A ILE 213 38 1 Y 1 B SER 214 ? A SER 214 39 1 Y 1 B PRO 215 ? A PRO 215 40 1 Y 1 B MET 216 ? A MET 216 41 1 Y 1 B PRO 217 ? A PRO 217 42 1 Y 1 B PRO 218 ? A PRO 218 43 1 Y 1 B SER 219 ? A SER 219 44 1 Y 1 B SER 220 ? A SER 220 45 1 Y 1 B SER 221 ? A SER 221 46 1 Y 1 B GLY 222 ? A GLY 222 47 1 Y 1 B VAL 223 ? A VAL 223 48 1 Y 1 B GLY 224 ? A GLY 224 49 1 Y 1 B ASN 225 ? A ASN 225 50 1 Y 1 B SER 226 ? A SER 226 51 1 Y 1 B ALA 227 ? A ALA 227 52 1 Y 1 B THR 228 ? A THR 228 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 4100 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Nicotiana benthamiana' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 7111 _em_entity_assembly_recombinant.organism 'Trichoplusia ni' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Natural Science Foundation of China (NSFC)' Germany ? 1 'Alexander von Humboldt Foundation' Germany ? 2 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 A NAG 1 B NAG 1004 n B 2 NAG 2 A NAG 2 B NAG 1005 n B 2 BMA 3 A BMA 3 B BMA 1006 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #