HEADER PLANT PROTEIN 26-NOV-21 7W3T TITLE CRYO-EM STRUCTURE OF PLANT RECEPTOR LIKE KINASE NBBAK1 IN RXEG1-BAK1- TITLE 2 XEG1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: BAK1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA BENTHAMIANA; SOURCE 3 ORGANISM_TAXID: 4100; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS LRR, PTI, GLYCOSIDE HYDROLASE, INHIBITOR, PLANT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.SUN,Y.WANG,X.X.ZHANG,Z.D.CHEN,Y.Q.XIA,Y.J.SUN,M.M.ZHANG,Y.XIAO, AUTHOR 2 Z.F.HAN,Y.C.WANG,J.J.CHAI REVDAT 2 26-OCT-22 7W3T 1 JRNL REVDAT 1 22-JUN-22 7W3T 0 JRNL AUTH Y.SUN,Y.WANG,X.ZHANG,Z.CHEN,Y.XIA,L.WANG,Y.SUN,M.ZHANG, JRNL AUTH 2 Y.XIAO,Z.HAN,Y.WANG,J.CHAI JRNL TITL PLANT RECEPTOR-LIKE PROTEIN ACTIVATION BY A MICROBIAL JRNL TITL 2 GLYCOSIDE HYDROLASE. JRNL REF NATURE V. 610 335 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 36131021 JRNL DOI 10.1038/S41586-022-05214-X REMARK 2 REMARK 2 RESOLUTION. 3.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.590 REMARK 3 NUMBER OF PARTICLES : 36117 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7W3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-21. REMARK 100 THE DEPOSITION ID IS D_1300025809. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BAK1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLN B 3 REMARK 465 TRP B 4 REMARK 465 ILE B 5 REMARK 465 LEU B 6 REMARK 465 GLY B 7 REMARK 465 ILE B 8 REMARK 465 LEU B 9 REMARK 465 GLY B 10 REMARK 465 PHE B 11 REMARK 465 VAL B 12 REMARK 465 SER B 13 REMARK 465 THR B 14 REMARK 465 PHE B 15 REMARK 465 LEU B 16 REMARK 465 CYS B 17 REMARK 465 LEU B 18 REMARK 465 ILE B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 21 REMARK 465 LEU B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 PRO B 25 REMARK 465 VAL B 26 REMARK 465 SER B 27 REMARK 465 ALA B 28 REMARK 465 PRO B 205 REMARK 465 PRO B 206 REMARK 465 ALA B 207 REMARK 465 ALA B 208 REMARK 465 PRO B 209 REMARK 465 PRO B 210 REMARK 465 PRO B 211 REMARK 465 PRO B 212 REMARK 465 ILE B 213 REMARK 465 SER B 214 REMARK 465 PRO B 215 REMARK 465 MET B 216 REMARK 465 PRO B 217 REMARK 465 PRO B 218 REMARK 465 SER B 219 REMARK 465 SER B 220 REMARK 465 SER B 221 REMARK 465 GLY B 222 REMARK 465 VAL B 223 REMARK 465 GLY B 224 REMARK 465 ASN B 225 REMARK 465 SER B 226 REMARK 465 ALA B 227 REMARK 465 THR B 228 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-32293 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF PLANT RECEPTOR LIKE PROTEIN RXEG1 IN COMPLEX REMARK 900 WITH XYLOGLUCANASE XEG1 AND BAK1 DBREF 7W3T B 1 228 PDB 7W3T 7W3T 1 228 SEQRES 1 B 228 MET ASP GLN TRP ILE LEU GLY ILE LEU GLY PHE VAL SER SEQRES 2 B 228 THR PHE LEU CYS LEU ILE GLY LEU LEU LEU VAL PRO VAL SEQRES 3 B 228 SER ALA ASN ILE GLU GLY ASP ALA LEU ASN ALA LEU LYS SEQRES 4 B 228 THR ASN LEU ALA ASP PRO ASN ASN VAL LEU GLN SER TRP SEQRES 5 B 228 ASP PRO THR LEU VAL ASN PRO CYS THR TRP PHE HIS VAL SEQRES 6 B 228 THR CYS ASN SER GLU ASN SER VAL THR ARG VAL ASP LEU SEQRES 7 B 228 GLY ASN ALA ASN LEU SER GLY GLN LEU VAL PRO GLN LEU SEQRES 8 B 228 GLY GLN LEU PRO ASN LEU GLN TYR LEU GLU LEU TYR SER SEQRES 9 B 228 ASN ASN ILE SER GLY ARG ILE PRO PHE GLU LEU GLY ASN SEQRES 10 B 228 LEU THR ASN LEU VAL SER LEU ASP LEU TYR LEU ASN ARG SEQRES 11 B 228 LEU ASN GLY PRO ILE PRO ASP THR LEU GLY LYS LEU GLN SEQRES 12 B 228 LYS LEU ARG PHE LEU ARG LEU ASN ASN ASN SER LEU ASN SEQRES 13 B 228 GLY ARG ILE PRO MET LEU LEU THR THR VAL ILE SER LEU SEQRES 14 B 228 GLN VAL LEU ASP LEU SER ASN ASN ASN LEU THR GLY PRO SEQRES 15 B 228 VAL PRO VAL ASN GLY SER PHE SER LEU PHE THR PRO ILE SEQRES 16 B 228 SER PHE ALA ASN ASN PRO LEU ASP ILE PRO PRO ALA ALA SEQRES 17 B 228 PRO PRO PRO PRO ILE SER PRO MET PRO PRO SER SER SER SEQRES 18 B 228 GLY VAL GLY ASN SER ALA THR HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET NAG B1000 14 HET NAG B1001 14 HET NAG B1002 14 HET NAG B1003 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 HELIX 1 AA1 ASN B 29 ASN B 41 1 13 HELIX 2 AA2 GLN B 90 LEU B 94 5 5 HELIX 3 AA3 PRO B 112 LEU B 118 5 7 HELIX 4 AA4 PRO B 136 LEU B 142 5 7 HELIX 5 AA5 MET B 161 VAL B 166 5 6 HELIX 6 AA6 ASN B 186 LEU B 191 5 6 HELIX 7 AA7 THR B 193 PHE B 197 5 5 SHEET 1 AA1 4 LEU B 42 ALA B 43 0 SHEET 2 AA1 4 SER B 84 GLY B 85 -1 O SER B 84 N ALA B 43 SHEET 3 AA1 4 ASN B 106 GLY B 109 1 O SER B 108 N GLY B 85 SHEET 4 AA1 4 ARG B 130 LEU B 131 1 O ARG B 130 N ILE B 107 SHEET 1 AA2 6 VAL B 65 THR B 66 0 SHEET 2 AA2 6 ARG B 75 LEU B 78 -1 O ARG B 75 N THR B 66 SHEET 3 AA2 6 LEU B 100 LEU B 102 1 O GLU B 101 N VAL B 76 SHEET 4 AA2 6 SER B 123 ASP B 125 1 O ASP B 125 N LEU B 100 SHEET 5 AA2 6 PHE B 147 ASN B 151 1 O ARG B 149 N LEU B 124 SHEET 6 AA2 6 VAL B 171 SER B 175 1 O ASP B 173 N LEU B 150 SHEET 1 AA3 2 GLY B 157 ARG B 158 0 SHEET 2 AA3 2 LEU B 179 THR B 180 1 O THR B 180 N GLY B 157 SSBOND 1 CYS B 60 CYS B 67 1555 1555 2.03 LINK ND2 ASN B 82 C1 NAG B1000 1555 1555 1.44 LINK ND2 ASN B 106 C1 NAG B1001 1555 1555 1.45 LINK ND2 ASN B 117 C1 NAG B1002 1555 1555 1.44 LINK ND2 ASN B 152 C1 NAG B1003 1555 1555 1.44 LINK ND2 ASN B 186 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000